EsuBft1100_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1100_2a-0001
Unique Name	EsuBft1100_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_307	contig	Scaffold_307:47667..50808 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G6Q2
ProteomeId	EsuBft1100_2
Protein domains	IPR027806
Protein domains	PTHR22930
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	187
Hectar predicted targeting category	other localisation
Evalue	2.03e-129
EggNOG OGs	2AWDH@1\|root,2RZYI@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	DDE superfamily endonuclease
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1100_2a	EsuBft1100_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_307 47667..50808 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1100_2a-0001	EsuBft1100_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_307 47834..49993 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1100_2a-0001-exon	EsuBft1100_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_307 47667..47984 +
EsuBft1100_2a-0001-exon	agat-exon-6795	Ectocarpus subulatus male Bft15b	exon	Scaffold_307 48335..48347 +
EsuBft1100_2a-0001-exon	agat-exon-6794	Ectocarpus subulatus male Bft15b	exon	Scaffold_307 49264..50808 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1100_2a-0001-exon	agat-five_prime_utr-611	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_307 47667..47833 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1100_2a-0001-cds	EsuBft1100_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_307 47834..47984 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1100_2a-0001-exon	agat-three_prime_utr-969	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_307 49994..50808 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_307:47667..50808+
coding sequence from alignment at Scaffold_307:47667..50808+

spliced messenger RNA

>EsuBft1100_2a-0001 ID=EsuBft1100_2a-0001|Name=EsuBft1100_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1876bp|location=Sequence derived from alignment at Scaffold_307:47667..50808+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCAGCAGCCAGTACTCCAGTACATTCTTATATTCGCAGATTTCCTCTGT
ATTACGCCTCAAGAACCAGCGGAAACCCATATACTCAGACCTCCTCTGAG
AGACACACCGCCACACGTCAAACACTAGCTACCAAACACGCCACAGAGGT
CGGGAGACCATACAACGATGGACAGGTTTGTAGTCTCCCCTGCCAGCTCG
CCGTCTGCTGCAGACCCCGGCAGTGGTGCTGATGATGCAGGGGCTGCTGC
GTCAGCAGCAGCAGCAGCAGCAGCAGCGGTTCAGGGCTGCCGTGTCGTTG
TGTCCTTCGTAGAGTCCAGTGGATGTCGAGGTGGAGGGCATGGAGTTCAG
AGGGTTCCAGCGAGGCTGGCGTTCGCGGTGACACTGTGGAGGCTGGCGGC
ACCAACGACTTTGATTCGCGACAGGATATTTTGGGGGATGTCGGAGACGC
TCATATGCGAGATCTTCAACCTAACATTCGAGGCAATCTTCGAACGCTGG
GGTGATCTTGTGAATGACTTGCAAGTAGACGCCATCCTTCCCAAAATCGA
TTCGTTCTGCGAGGCCATTGCCGGCCACGGATCACCTCTCACTAGGTGCT
GGGGATTCCTAGGTGGAACTATTCGTAAGATTGCTCGTCCTTGGCGAAAT
CAGCGCATTAACTATACCGGATGGAAGCGTGTACACTCATTGAAGTATCA
GGCGGTTGATTCCCCGGATGGCATCATCCGTCAACTTTGGGGTCCTATGC
TCGGTAGGCGCCATGATGTGACGTTGCTGGGGCTAAGTGGGCTGTTGGAG
ACGTTGACGCAGTCATTCAACGATGCGGCGGGCGCACCGTACTACATTTA
CGGAGACCCAGCATACCAGGTATCCCCATGGCTGATGGCGCCATACAAGG
GTTTGTTGTCTGTAGCCGAGGTGGCATTCAACAGGGCGATAAGTAGAGTA
AGGGTGACTGTCGAATGGGGCTTCGGCCGGGTCGTGGCGTTGTGGCCTTT
CGGTGACTACGTGAAGAAGCAGCAGGTGGCCCTCAGCGCATGCGGTATTG
GAAAGCAGTAGGCGGTGGCTGGTATCCTGACGGATTGCCACTGCTGTTTC
TACCCAAACTCGACAGCAAAATTCCTTGACCTTACCCCCCCTTCCCTTCA
AGAATATCTTTCGGAAGAGGGGTGACAACGTGTGTCTAATTTGCATGGGA
CTGATGCAGGAAGTAGCTACTGTATTTGGCACCGCACTGTCCCGTACCAT
CATGCACATGGCCATATCGACGTGAGGTATAGGGGTTGACATCAAGCTGC
GTTTCGTTCAGATGATTTGGGTTACCTCACGGCTTCAAAGTGACAACAGC
GGGGGCTAGAGTTTAAGACCTTGGCTTCCTATTGCGCTTGTTTTCCCGAA
TTATTGTAGGGGGGTAGAGGTCCCGTTGTACGGTCGAATTCCCCTGATAC
TGCGAACCACCGTAATGTTGTCTCGGGATTATTTCGTGGTTGTTCCTGTG
GGCTGAAGCGTTGGAGGGGACCTGTTTATCTTCCTGTTTGTTTCCTGGAT
TTTCTCCTTCTTTTCCATTTATTTGCTTTGTTTGTTTCTCGTTCTTTCTT
CCTGTTAGACCGAGGTCGATTGCCTATATCCGGGTTAGTTTTTCTTTAGG
TGTCCTTTTTTGTTTGGGCAGAAAACGAATCGTGCCTTGGAGGAATTTTC
TTGTGTCCTTTGTTGCGTCTTGATTTCTTGAAAAGGTGCACCCCGTTTGG
GGGTAGTTGGCTTGTGGTCATGGGAGGTGTCCGCGTCAGTTGGACCAGTA
CAAACATTAGAAGGCACCGAGTGAGGCCTTTGCGTTTGGTCATGTGAAGA
CAACCTCAAGTTCAAATAACATAATT

protein sequence of EsuBft1100_2a-0001

>EsuBft1100_2 ID=EsuBft1100_2|Name=EsuBft1100_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=297bp
MDRFVVSPASSPSAADPGSGADDAGAAASAAAAAAAAVQGCRVVVSFVES
SGCRGGGHGVQRVPARLAFAVTLWRLAAPTTLIRDRIFWGMSETLICEIF
NLTFEAIFERWGDLVNDLQVDAILPKIDSFCEAIAGHGSPLTRCWGFLGG
TIRKIARPWRNQRINYTGWKRVHSLKYQAVDSPDGIIRQLWGPMLGRRHD
VTLLGLSGLLETLTQSFNDAAGAPYYIYGDPAYQVSPWLMAPYKGLLSVA
EVAFNRAISRVRVTVEWGFGRVVALWPFGDYVKKQQVALSACGIGKQ

mRNA from alignment at Scaffold_307:47667..50808+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1100_2a-0001 ID=EsuBft1100_2a-0001|Name=EsuBft1100_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3142bp|location=Sequence derived from alignment at Scaffold_307:47667..50808+ (Ectocarpus subulatus male Bft15b)
GTCAGCAGCCAGTACTCCAGTACATTCTTATATTCGCAGATTTCCTCTGT
ATTACGCCTCAAGAACCAGCGGAAACCCATATACTCAGACCTCCTCTGAG
AGACACACCGCCACACGTCAAACACTAGCTACCAAACACGCCACAGAGGT
CGGGAGACCATACAACGATGGACAGGTTTGTAGTCTCCCCTGCCAGCTCG
CCGTCTGCTGCAGACCCCGGCAGTGGTGCTGATGATGCAGGGGCTGCTGC
GTCAGCAGCAGCAGCAGCAGCAGCAGCGGTTCAGGGCTGCCGTGTCGTTG
TGTCCTTCGTAGAGTCCAGTATACGATAGCGTCGCTCATCAACCCAACTG
ACGGATGCCACTTGGTTGCTTGGGAGTAATATTATCATGTTTCAATATTT
CCTCATGTCCAAAACCAACAAATTCAGTCGTTGAACTCGAACTTTTCATC
GTTTTCCCCGCGATAGTGCCTCTGTCAAATGGGCCAAAATCACTCATTTT
CTTTGCTCTAGTGAAGCCAAATCGCGTACAAAAGCGCCTCCGGCGGGGCG
CCTCCAGCGGGGCCCTCCGGGGGCGCCTCCGGCGGGGTGCAGCCAGTATA
CTTTTTACTGGCGCGCAGCGCCAGTACCCAACCCTACCAACTAGGGTTCT
TGTTTGGTATAAAATCAGGTGGATGTCGAGGGTATAAATAATCTCGCGGC
GCGTCTAGTGTGGCAGTTTCATGAGTTGGGTGCATCCGCCACCACCGCGC
CTTGTGTGCATACACATGACTCTCGCATCGAGCGACAACTTTCTTCCGAG
CAGAGGGCCCATTCTTCAGCCTAGGTCGTACGCGCTCTTGGGTTGAATTA
AATGTAGCTCATCCGCCCTTCTATCGAGACGAGGTAGGTATGCCCTACGA
AGTAAGATGTGTAGACGCTCGTAAAGTCCCCGTCACACGCCAGACTCCAA
GTTTGTCTCATATGAATATCTAGACTGCTTGAAGAAAAGGTTACGAAACC
GGTCGAATCAATAGAAGTTGGTGCTGCTCCACGTACAATTGCAGCCTTGT
TGTTGGTATAGTCTACTGCTGTAGCACAGTGCTGACCTTTGGTTGGCCGT
ATTGTTTACTAACCGCACTGTGCATGGTACCTATCATGGCGGCATGAGCT
GTACAACCTAGGCAGACAACATGTAGCGAGCAAAACGCGTAGCACGTTGA
AAGAGAGTCAAGGCTCAACCGACTACAATCCCACCCATGCAAATGGCATT
TGTCGCCAATTGGATGACCTCAACCCGTGTCGATCGGGGGCGTTCCGTAG
AGGGTGGTTTTGTCCTATCAGCGATCGGGACGACGGTAATAAAACGCCCA
CGACAACATAACCTAGGACAAAAACCGCGACGTTTCGGACGCCGAGATAC
TCCACAGCATCTGTCTGACTCTTAGCCGTATGAGCCTTACGCTGATGACG
ATTACTTCTACACACCAGGGTCAGCCCAGCGGCATATACCACTATCGTTA
ACCCCTAGGCCTCATGGGTTCGTGCTAAAATCGTCGGTCTATAACCCGTA
GTGCTACATTCGCATTCGACTCTTTTTCTGTACTCCATGCCTTGCAGTGG
AGGGCATGGAGTTCAGAGGGTTCCAGCGAGGCTGGCGTTCGCGGTGACAC
TGTGGAGGCTGGCGGCACCAACGACTTTGATTCGCGACAGGATATTTTGG
GGGATGTCGGAGACGCTCATATGCGAGATCTTCAACCTAACATTCGAGGC
AATCTTCGAACGCTGGGGTGATCTTGTGAATGACTTGCAAGTAGACGCCA
TCCTTCCCAAAATCGATTCGTTCTGCGAGGCCATTGCCGGCCACGGATCA
CCTCTCACTAGGTGCTGGGGATTCCTAGGTGGAACTATTCGTAAGATTGC
TCGTCCTTGGCGAAATCAGCGCATTAACTATACCGGATGGAAGCGTGTAC
ACTCATTGAAGTATCAGGCGGTTGATTCCCCGGATGGCATCATCCGTCAA
CTTTGGGGTCCTATGCTCGGTAGGCGCCATGATGTGACGTTGCTGGGGCT
AAGTGGGCTGTTGGAGACGTTGACGCAGTCATTCAACGATGCGGCGGGCG
CACCGTACTACATTTACGGAGACCCAGCATACCAGGTATCCCCATGGCTG
ATGGCGCCATACAAGGGTTTGTTGTCTGTAGCCGAGGTGGCATTCAACAG
GGCGATAAGTAGAGTAAGGGTGACTGTCGAATGGGGCTTCGGCCGGGTCG
TGGCGTTGTGGCCTTTCGGTGACTACGTGAAGAAGCAGCAGGTGGCCCTC
AGCGCATGCGGTATTGGAAAGCAGTAGGCGGTGGCTGGTATCCTGACGGA
TTGCCACTGCTGTTTCTACCCAAACTCGACAGCAAAATTCCTTGACCTTA
CCCCCCCTTCCCTTCAAGAATATCTTTCGGAAGAGGGGTGACAACGTGTG
TCTAATTTGCATGGGACTGATGCAGGAAGTAGCTACTGTATTTGGCACCG
CACTGTCCCGTACCATCATGCACATGGCCATATCGACGTGAGGTATAGGG
GTTGACATCAAGCTGCGTTTCGTTCAGATGATTTGGGTTACCTCACGGCT
TCAAAGTGACAACAGCGGGGGCTAGAGTTTAAGACCTTGGCTTCCTATTG
CGCTTGTTTTCCCGAATTATTGTAGGGGGGTAGAGGTCCCGTTGTACGGT
CGAATTCCCCTGATACTGCGAACCACCGTAATGTTGTCTCGGGATTATTT
CGTGGTTGTTCCTGTGGGCTGAAGCGTTGGAGGGGACCTGTTTATCTTCC
TGTTTGTTTCCTGGATTTTCTCCTTCTTTTCCATTTATTTGCTTTGTTTG
TTTCTCGTTCTTTCTTCCTGTTAGACCGAGGTCGATTGCCTATATCCGGG
TTAGTTTTTCTTTAGGTGTCCTTTTTTGTTTGGGCAGAAAACGAATCGTG
CCTTGGAGGAATTTTCTTGTGTCCTTTGTTGCGTCTTGATTTCTTGAAAA
GGTGCACCCCGTTTGGGGGTAGTTGGCTTGTGGTCATGGGAGGTGTCCGC
GTCAGTTGGACCAGTACAAACATTAGAAGGCACCGAGTGAGGCCTTTGCG
TTTGGTCATGTGAAGACAACCTCAAGTTCAAATAACATAATT

Coding sequence (CDS) from alignment at Scaffold_307:47667..50808+

>EsuBft1100_2a-0001 ID=EsuBft1100_2a-0001|Name=EsuBft1100_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=894bp|location=Sequence derived from alignment at Scaffold_307:47667..50808+ (Ectocarpus subulatus male Bft15b)
ATGGACAGGTTTGTAGTCTCCCCTGCCAGCTCGCCGTCTGCTGCAGACCC
CGGCAGTGGTGCTGATGATGCAGGGGCTGCTGCGTCAGCAGCAGCAGCAG
CAGCAGCAGCGGTTCAGGGCTGCCGTGTCGTTGTGTCCTTCGTAGAGTCC
AGTGGATGTCGAGGTGGAGGGCATGGAGTTCAGAGGGTTCCAGCGAGGCT
GGCGTTCGCGGTGACACTGTGGAGGCTGGCGGCACCAACGACTTTGATTC
GCGACAGGATATTTTGGGGGATGTCGGAGACGCTCATATGCGAGATCTTC
AACCTAACATTCGAGGCAATCTTCGAACGCTGGGGTGATCTTGTGAATGA
CTTGCAAGTAGACGCCATCCTTCCCAAAATCGATTCGTTCTGCGAGGCCA
TTGCCGGCCACGGATCACCTCTCACTAGGTGCTGGGGATTCCTAGGTGGA
ACTATTCGTAAGATTGCTCGTCCTTGGCGAAATCAGCGCATTAACTATAC
CGGATGGAAGCGTGTACACTCATTGAAGTATCAGGCGGTTGATTCCCCGG
ATGGCATCATCCGTCAACTTTGGGGTCCTATGCTCGGTAGGCGCCATGAT
GTGACGTTGCTGGGGCTAAGTGGGCTGTTGGAGACGTTGACGCAGTCATT
CAACGATGCGGCGGGCGCACCGTACTACATTTACGGAGACCCAGCATACC
AGGTATCCCCATGGCTGATGGCGCCATACAAGGGTTTGTTGTCTGTAGCC
GAGGTGGCATTCAACAGGGCGATAAGTAGAGTAAGGGTGACTGTCGAATG
GGGCTTCGGCCGGGTCGTGGCGTTGTGGCCTTTCGGTGACTACGTGAAGA
AGCAGCAGGTGGCCCTCAGCGCATGCGGTATTGGAAAGCAGTAG