EsuBft971_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft971_7a-0001
Unique NameEsuBft971_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_301contigScaffold_301:66475..70012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
SymbolLHCP
StatusManually annotated
Seed ortholog2880.D7FQG7
ProteomeIdEsuBft971_7
Protein domainsPTHR21649
Protein domainsIPR022796
Protein domainsTMhelix
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSignalP-TM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR001344
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsIPR023329
Protein domainsSIGNAL_PEPTIDE_N_REGION
Ownerapollo_admin@sb-roscoff.fr
Notefucoxanthin-chlorophyll a-c binding chloroplastic os:isoScaffold_ysis galbana gn:fcp pe:1 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1438
Hectar predicted targeting categorychloroplast
Evalue7.38e-157
EggNOG OGs2BEWM@1|root,2S15M@2759|Eukaryota
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-01_006160.1
Date last modified2016-08-11
Date creation2016-06-15
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
DescriptionLight harvesting complex protein, LHCX family
DescriptionChlorophyll A-B binding protein
COG categoryU
BRITEko00000,ko00001,ko00194
NoteDittami S., annotator
Cross References
External references for this mRNA
DatabaseAccession
GO0009765
GO0044434
GO0016168
GO0003333
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft971_7aEsuBft971_7aEctocarpus subulatus male Bft15bgeneScaffold_301 66475..70012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft971_7a-0001EsuBft971_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_301 67105..69900 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft971_7a-0001-exonEsuBft971_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_301 66475..67279 -
EsuBft971_7a-0001-exonagat-exon-83660Ectocarpus subulatus male Bft15bexonScaffold_301 67586..67728 -
EsuBft971_7a-0001-exonagat-exon-83659Ectocarpus subulatus male Bft15bexonScaffold_301 68273..68461 -
EsuBft971_7a-0001-exonagat-exon-83661Ectocarpus subulatus male Bft15bexonScaffold_301 69712..70012 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft971_7a-0001-exonagat-three_prime_utr-23654Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_301 66475..67104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft971_7a-0001-cdsEsuBft971_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_301 67105..67279 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft971_7a-0001-exonagat-five_prime_utr-15396Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_301 69901..70012 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft971_7a-0001 ID=EsuBft971_7a-0001|Name=EsuBft971_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1438bp|location=Sequence derived from alignment at Scaffold_301:66475..70012- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CATCAAAACAGTCAACAGCCACGGCTGCACCACCCACCGTTCTCCACACC
TTTGTCTCTCCCTCATCACCACATTCTCCTCTACCCTCTTCTCGAAGACA
CGCTCAACCAAGATGGTGTCCTCCCAGTTGTTCCTTGGCACTGCTGCTAC
CCTTATCGCCTCATCGGCGGCGTTCGTTGCACCGATCGCTGCGCCGCGAT
CCTCCACTGCGCGTGTTGCTGCGTCTTCGACCCCCAAGATGACCGCAGGC
TCGGACTACGCAGCTTCATTGCCGGGTGCGCCATTCGGAATGGCGGCCGA
GGGGAAGTACTTCGACCCTGCAGGGTTGGCTACGAATCAGGATCCCGAGA
CAATCAAGAAGTGGCGCGAGGCTGAGTTGAAGCACGGCCGCGTGTCGATG
TTGGCTGCGGTGGGTATCCTTGTCAGCGAGGTATTCCACCCGCTGTTCAT
GGGCCCGGCGTACATCGGCCCTGCGGTGGAGCACGCTCAGCAAATCGCGA
CGGTCTACCCCCTGTTCTGGGTAGCTTCTGTAGGCATGATCGCGTTCATC
GAGGGACAGACGATCAAGGACGCGTGGGGCACTGTCAGCCCCGTGACTGG
TGTCGGAAACTTGAAAACCGAGTACTACCCGGGAGATCTTGGGTTCGACC
CGCTCGGTCTCGCGCCCAAAGACGGCGAGGACTTCCGGTTGATCCAGTCT
CAGGAGCTCGACCTCGGGCGGTACGCCATGATTGGCGTGTTGGGGATGAT
TGTTCAAGAGGTTGTAGACGGGAAGGGTATTCTGGAACACATCGTCTCGC
GGGTTTAGACGTGTTTGTTGTGCGATGAGTTTTCTTCCCTCCTGGCGTAT
TTCATGTATTTGTGACTCCGGTGACGCGCGGTCCGAACGTTCGTATTGGC
GCTTGTTGCCAGTTGGCGTGTGTGACGTATCTCGATGTCTTGCCGATGCT
TATCGCGTGGGTGGAGTGATGAGTTCATTGATCTGGAGTGGAACTGCTGT
GCCAGGGTTCACGGGGCGGGTAAGGGTGCGCATGGAACGAGTTGCAGTCA
TCATGTCAAAAACGATTGTAGACTTATGAATGAACCGATTTTTATGAGGG
AAGCTGATGTCACGCAGTTGCGGATATTCTACTAAACAGAGCTTGCAATA
ACGACGTTTCCGGTCGAAGAAACCCGAGTGTCACAAGAAACGTCTGGCTT
GGGGCCGTGAGAACGGAGTGGCAGCCTGGGCTTGCACGTGAAAAAAAAAA
TCGAAGCGAAAGACTAGAGTGTCCTTCGGCCGTGCTTCGATTTGGGCTAC
GATGCTGGGTGGAGCAGGAAGTTGCGTTATGGAGGAATAGAGCACTTCAC
GCTCCTAGCTGCAACACTCTAGATTGTTGGGACGAAATACAAACGATGAA
TTATTCAAAACATGCTGTGGCATGATGCTTTGAGATAC
back to top

protein sequence of EsuBft971_7a-0001

>EsuBft971_7 ID=EsuBft971_7|Name=EsuBft971_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=231bp
MVSSQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYA
ASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAV
GILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASVGMIAFIEGQT
IKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELD
LGRYAMIGVLGMIVQEVVDGKGILEHIVSRV
back to top

mRNA from alignment at Scaffold_301:66475..70012-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft971_7a-0001 ID=EsuBft971_7a-0001|Name=EsuBft971_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3538bp|location=Sequence derived from alignment at Scaffold_301:66475..70012- (Ectocarpus subulatus male Bft15b)
CATCAAAACAGTCAACAGCCACGGCTGCACCACCCACCGTTCTCCACACC
TTTGTCTCTCCCTCATCACCACATTCTCCTCTACCCTCTTCTCGAAGACA
CGCTCAACCAAGATGGTGTCCTCCCAGTTGTTCCTTGGCACTGCTGCTAC
CCTTATCGCCTCATCGGCGGCGTTCGTTGCACCGATCGCTGCGCCGCGAT
CCTCCACTGCGCGTGTTGCTGCGTCTTCGACCCCCAAGATGACCGCAGGC
TCGGACTACGCAGCTTCATTGCCGGGTGCGCCATTCGGAATGGCGGCCGA
GGTATGCTTCCTGTTTCGTTTTAGTGTTGCTTGGGTACTGCTGTAGATCG
GATACACTTGCGTGGTAGTGGGTTGGCGGTGTAACCCAGGCACAGCAGTA
GTATTTTTGCTGTTTTACGCGATCGTTCGGAGTGTCACATTTCAGAATGA
CGCATCCTGTGCTGTGATGTCACAACAATGTTCTGCGCAATACATGATGC
TGACCAGCCATGTAGTAACACAAGCAAAACTTTTGCTTCCGGATGGATTC
TGCTTTGATCCTAGACATGAAAGAACAGTCGCCCATCACACGGGGAACTT
ACGCCATGAAAGTGGTGCACAACTGCAGTACGTAAATGGTCTGGCATGTA
GTCTAGACCACACCATTGATTGATGGGCCTTAAACCCGGCCTAAGCCAAT
CTCTCATGAGCCTCACCGTAGTCTGCTGTCATACTCACCGTGAACACCAA
TCACCCTCTGACGGCACCTCTGGAACGTGTTTCATATTACGCCGTAGGTG
CGTTGGAGGAACTGGTCCCCATTACGATGTATCTAACACCGGAAAGGGCG
ACATGGCAGGATTCCTGGTGTCACCTGCGTTTGCTGATAACACGCGTCTT
CTCGAACACGACAGTCGTCAACGTTGTACAGAGATACAATCATCAGCTCC
CCGTCTACAACAAACGCGCATCATTCTACACTCTTGTCACCAAGAACGAA
AAGCTTTCACCGCATGTGTTTTGCCCCCCAGGTATCTCTAGTCTACAGTT
TACGGTCGTCGATTCATCAATGTACCTATGCCACTGCAGGGAAAACCGGA
ACTAATATGTGCTCAGAGACGCTGAGTTACGCCCTCGTTTAATGGACGTG
CCCAGATTGTGATCACCGATGACGCCGGTGCGCTAAACCACCGCGAACTA
TTGGCTTCAACTGAACTTTTCGCATGACACGTGCTCCCCTATGGATCACT
TGTATGGTAACAACCGAAGACAAGACATCTCGTGCATGTATTACATTAGA
TATCCAACAAAGTATTGGGGCGAATCCTAAGGTTGTGAATGGAAGGAACC
TAGCTGTACGCTGAAAGCGAACTTCTGCCATCAGATCCGCCATTACACAC
GACACGTCACGTGTATTTAGAAAGTATACATATTCTACCGTCACTGAAGA
CCACCCGCTTACGCCGCCAATATTTTCGCGAACGCATCAAGTAACCACCG
ACTCTTTCCTTCCTTTTGCTTCCTCACCCATCCCTGCCCAAATCCTGCCA
GGGGAAGTACTTCGACCCTGCAGGGTTGGCTACGAATCAGGATCCCGAGA
CAATCAAGAAGTGGCGCGAGGCTGAGTTGAAGCACGGCCGCGTGTCGATG
TTGGCTGCGGTGGGTATCCTTGTCAGCGAGGTATTCCACCCGCTGTTCAT
GGGCCCGGCGTACATCGGCCCTGCGGTGGAGCACGCTCAGGTACGACCAC
CGCATAACGATTGTACTCCCTTGCTTTCCTCGGCACTTTGCGCCGTGGCC
CCTCAGTAGGAGACCTATCTCCGTACTGCCGGCGAATGTGGCGAGCCACT
CAAGTTGCGGCTGCAGCATCAAATCTGTGATGGCTAAGGGAACAAAGTAG
TGTTCGTCTTCGTTCCCGGGTAGCCCGATCCACCACGTGCTTGGTCCTTG
AAGTTGCGCCTTACAGCTAAACGTTTTGCGGCACGGTGCATCTTTGCTCA
AACCTGGGCCAAGTTCGTTCGTGCTCATGTGTCGTGTGCGTGGTTTTGGG
GCTTCAGGTGTATCAACTAGTTCATATCTGTCTGGTTTCGAATCTCTATC
TCTGTCCCCTGTCTCAAATGTCTTACAAGTTGACGAACAGGTGTTGACCT
GGATTTAGAGACTGTCATCTGCGTTCCATAATCAATGACATCAATCTCAT
GCCTACCCTTCGTTGCTAATTTTCCATATCTGGGTTCCCGCGCCCTGACA
AATCGCATGCACGCTGTTCCTATCCACATTCCAGCAAATCGCGACGGTCT
ACCCCCTGTTCTGGGTAGCTTCTGTAGGCATGATCGCGTTCATCGAGGGA
CAGACGATCAAGGACGCGTGGGGCACTGTCAGCCCCGTGACTGGTGTCGG
AAACTTGAAAACCGAGTACTACCCGGGGTGAGTGCCGAGCGTCTTGTACA
AATATGTACAAATATCAAGGTGTAGTTATCGGTAAGTTGCGGAGAATCGG
ACGTCCGGGCACCGGACGATGATAAGATGTCCGCAACTGAATGCTTGATA
TTTATCCTGGTGGGTACCGCTTTTTGTAGTAACGCCGCGTTGAGCCCGCC
GAGATGATATTCAAACTCGTGAGGAAAGAGCAGGGTCTGGTCCAGGGAAT
TGGCGGTACCTTTAAGGGCTCCTAGTCCTAATGCTCTGTCTGCTCTCTCC
CCTACACTTCCCGATTCGATTGTTGCATCGCAGAGATCTTGGGTTCGACC
CGCTCGGTCTCGCGCCCAAAGACGGCGAGGACTTCCGGTTGATCCAGTCT
CAGGAGCTCGACCTCGGGCGGTACGCCATGATTGGCGTGTTGGGGATGAT
TGTTCAAGAGGTTGTAGACGGGAAGGGTATTCTGGAACACATCGTCTCGC
GGGTTTAGACGTGTTTGTTGTGCGATGAGTTTTCTTCCCTCCTGGCGTAT
TTCATGTATTTGTGACTCCGGTGACGCGCGGTCCGAACGTTCGTATTGGC
GCTTGTTGCCAGTTGGCGTGTGTGACGTATCTCGATGTCTTGCCGATGCT
TATCGCGTGGGTGGAGTGATGAGTTCATTGATCTGGAGTGGAACTGCTGT
GCCAGGGTTCACGGGGCGGGTAAGGGTGCGCATGGAACGAGTTGCAGTCA
TCATGTCAAAAACGATTGTAGACTTATGAATGAACCGATTTTTATGAGGG
AAGCTGATGTCACGCAGTTGCGGATATTCTACTAAACAGAGCTTGCAATA
ACGACGTTTCCGGTCGAAGAAACCCGAGTGTCACAAGAAACGTCTGGCTT
GGGGCCGTGAGAACGGAGTGGCAGCCTGGGCTTGCACGTGAAAAAAAAAA
TCGAAGCGAAAGACTAGAGTGTCCTTCGGCCGTGCTTCGATTTGGGCTAC
GATGCTGGGTGGAGCAGGAAGTTGCGTTATGGAGGAATAGAGCACTTCAC
GCTCCTAGCTGCAACACTCTAGATTGTTGGGACGAAATACAAACGATGAA
TTATTCAAAACATGCTGTGGCATGATGCTTTGAGATAC
back to top

Coding sequence (CDS) from alignment at Scaffold_301:66475..70012-

>EsuBft971_7a-0001 ID=EsuBft971_7a-0001|Name=EsuBft971_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=696bp|location=Sequence derived from alignment at Scaffold_301:66475..70012- (Ectocarpus subulatus male Bft15b)
ATGGTGTCCTCCCAGTTGTTCCTTGGCACTGCTGCTACCCTTATCGCCTC
ATCGGCGGCGTTCGTTGCACCGATCGCTGCGCCGCGATCCTCCACTGCGC
GTGTTGCTGCGTCTTCGACCCCCAAGATGACCGCAGGCTCGGACTACGCA
GCTTCATTGCCGGGTGCGCCATTCGGAATGGCGGCCGAGGGGAAGTACTT
CGACCCTGCAGGGTTGGCTACGAATCAGGATCCCGAGACAATCAAGAAGT
GGCGCGAGGCTGAGTTGAAGCACGGCCGCGTGTCGATGTTGGCTGCGGTG
GGTATCCTTGTCAGCGAGGTATTCCACCCGCTGTTCATGGGCCCGGCGTA
CATCGGCCCTGCGGTGGAGCACGCTCAGCAAATCGCGACGGTCTACCCCC
TGTTCTGGGTAGCTTCTGTAGGCATGATCGCGTTCATCGAGGGACAGACG
ATCAAGGACGCGTGGGGCACTGTCAGCCCCGTGACTGGTGTCGGAAACTT
GAAAACCGAGTACTACCCGGGAGATCTTGGGTTCGACCCGCTCGGTCTCG
CGCCCAAAGACGGCGAGGACTTCCGGTTGATCCAGTCTCAGGAGCTCGAC
CTCGGGCGGTACGCCATGATTGGCGTGTTGGGGATGATTGTTCAAGAGGT
TGTAGACGGGAAGGGTATTCTGGAACACATCGTCTCGCGGGTTTAG
back to top