EsuBft499_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft499_3a-0001
Unique Name	EsuBft499_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_30	contig	Scaffold_30:364736..367108 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	15368.BRADI4G04484.1
ProteomeId	EsuBft499_3
Protein domains	IPR013103
Protein domains	IPR001584
Protein domains	SSF56672
Protein domains	IPR012337
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	35493\|Streptophyta
Length	2265
Evalue	1.71e-69
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37V5Q@33090\|Viridiplantae,3GFFK@35493\|Streptophyta,3M7B5@4447\|Liliopsida,3IKJW@38820\|Poales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	transposition, RNA-mediated
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft499_3a	EsuBft499_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_30 364736..367108 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_3a-0001-exon	EsuBft499_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 364736..365662 +
EsuBft499_3a-0001-exon	agat-exon-76052	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 365714..366050 +
EsuBft499_3a-0001-exon	agat-exon-76053	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 366108..367108 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_3a-0001-cds	EsuBft499_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_30 364736..365662 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_3a-0001	EsuBft499_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_30 364736..367108 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_30:364736..367108+
coding sequence from alignment at Scaffold_30:364736..367108+

spliced messenger RNA

>EsuBft499_3a-0001 ID=EsuBft499_3a-0001|Name=EsuBft499_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2265bp|location=Sequence derived from alignment at Scaffold_30:364736..367108+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCGGATGGATACTCCAGCCCTGCTTCGCAAGTGGTACAGCAGCAT
GGGCCAGTCGGTGACGAGGAGTATGGTGATGGACGAGATGCGTTCGTTGC
TCTCAAGCAGAAGTACCGTGTTGAGGGTGTATTTCGCATGCAACAGCTCC
ATGANATTCCTGGAGCTGTGCAAGTCCCTCGGAATTACGGTCAAAACTAG
CGCTCCATACACTCCACAGCAGAACTCCATCGCAGAACGTGGATTTGGCA
CCATCATCGGAACTACTCGCAAACTAATGCTGGGCGCACCGCACCTTCCC
AGCGAGCTGTGGGCTGAAGCATTTCAGACCGCCATCTATCTCAAGAATCG
CACACCAACTGAAGTCCTCGGGGGCAAATCCCTACTCGAGCCTGGTATGG
TAGAATCAAACGAGGAAGAAACTAACGACGATAGCGATGAAGAAGCAGGC
CAAAGTACTGCAAAGTCGACACCATCTGTTCCAGAACCACGACGGAGCGC
CAGGGCATCTGCACCGCCGCAAAGGTTGAATCTATTTACGGTGACCTCGG
AGGAGGATGCTCATCAGCAGGTGGAACAAGCTCTTCTGATAGGGGGTGTA
CTCGGAAACGTCGGGACGGGCAACCCTGGAGAAAAAGGTTACAGGCCTCC
CGACCCGACCAACTACGACGACGCAACACGTGGACCAGATGCTGACCACT
GGAGGGGGAGTATGCGCGAAGAAAATCGTTCGCTCGCGGAACTCGATGTA
TACGATTGGGTGAAACGGCCGGCGGACGGTGATAAACTTCCGTCAAGATA
CCTATACAAACGGAAGTACGCAGCAGACGGAGAACTAGCTCGACTGAAGA
GTCGTATCGTGGTCCAAGGCTTCCGTCAAGAAGACACGGGGGAAGACAAG
GCATCATCAGTGGCCACATTGGAGGCGGCTGACATCAAGACAGCGTTCCT
ACATGCCAGGATCCCCGCTAACGCAGACCCGATTTATGTTTGTCCTCCGA
AAGGTTTCGAATGCTCTCCAGAACAAGCACGGCAGGTGTGGCGGCTAAAG
GCATGGCTCTACGGATTGCGTCTCTCCCCGAAAGGCTGGTGCAGCACCTT
TCACGACTTCCTGATTGAGAAAGGGTTCGTACAGAGTAAACCAGACCCCT
GCCTTTACATTCTCGAAGCGGAAGGAGTTATCCTTCTCGTGTACGTTGAC
GACATCCTGTTGTCGGGGAAGGACGAGGAGAAGGTCATGATGGTCATTGA
TCTGCTGAAGGAAGGANGCCTTTACATTCTCGAAGCGGAAGGAGTTATCC
TTCTCGTGTACGTTGACGACATCCTGCTGTCGGGGAAGGACGAGGAGAAG
GTCATGATGGTCGTTGATCTGCTGAAGGAACGGTTCAACACGGTGTTCTT
GGGGGATGCTCAGCACCTGCTTGGTATGAAGCTTGAGAGGAACGTCGACG
CCGGTACCATATTCCTTTCTCAAGAGACGTACGCAAAGACCGTGCTCGAC
CAGTTCGGAATGGCCGAATCGCGCCCGGTGAAGACACCGGCGGAACCTGG
ACCTATCAGCATCGAGGAGGAGAAGGTTTTATCTCCAGAGGACACCAAAT
ACTACCGGTCCGCCACGGGTAGCCTTCTGTATCTCAGCAGGGGCTCAAGA
CCGGACATCACACACTCGGTGATGGTGCCCGCGAAGAGTATGGCGAAGCC
AGGTCCCAGAGCGATGACAAAGCTGAAGCGGGTACTCCGGTATCTAAAAG
GAAAGACCTCTATCGGAATCACATACACCGAAGACGCCGACGGCGGAGAT
GAACTCACGGCGTACGTGGACTCTGATTTTGCAGGTGACCAAGACAAAGG
CTACTCCACAACCGGTGCCGTTCTCTATCTCGCAGGTGCCCCAGTGGACT
GGATATCCAAGAAGCAAACGGTGCTGGCCATCTCAACGTTCGAGGCTGAA
GCCGTTGCCCTGTCCAAGGCGTGCACTATTGTCATCCACTTTCGTAATTT
GCTGAAGTCGCTGAACATGAAGCAGGAGCAGCCCACGGTAGTGTTTGAGG
ACAACACAGGCGCTATAGCGCTTGCTATGGGCGCCAAACTCACGCCCCGT
ACTAAACATATCGACGTCAAGTATCACCACGTTCGGTACTTAGAGGAGAA
GAAAATCGTCGACGTCAATTATATCGAGACTAACTTGCAGAAGGCTGACA
TCCTGACTAAAAGTCAGGGAGCTGTGAAGTTCCTCCAGAACCGCCTTCTC
TTGCTTGGAGTGTAA

protein sequence of EsuBft499_3a-0001

>EsuBft499_3 ID=EsuBft499_3|Name=EsuBft499_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=754bp
MARMDTPALLRKWYSSMGQSVTRSMVMDEMRSLLSSRSTVLRVYFACNSS
MXFLELCKSLGITVKTSAPYTPQQNSIAERGFGTIIGTTRKLMLGAPHLP
SELWAEAFQTAIYLKNRTPTEVLGGKSLLEPGMVESNEEETNDDSDEEAG
QSTAKSTPSVPEPRRSARASAPPQRLNLFTVTSEEDAHQQVEQALLIGGV
LGNVGTGNPGEKGYRPPDPTNYDDATRGPDADHWRGSMREENRSLAELDV
YDWVKRPADGDKLPSRYLYKRKYAADGELARLKSRIVVQGFRQEDTGEDK
ASSVATLEAADIKTAFLHARIPANADPIYVCPPKGFECSPEQARQVWRLK
AWLYGLRLSPKGWCSTFHDFLIEKGFVQSKPDPCLYILEAEGVILLVYVD
DILLSGKDEEKVMMVIDLLKEGXLYILEAEGVILLVYVDDILLSGKDEEK
VMMVVDLLKERFNTVFLGDAQHLLGMKLERNVDAGTIFLSQETYAKTVLD
QFGMAESRPVKTPAEPGPISIEEEKVLSPEDTKYYRSATGSLLYLSRGSR
PDITHSVMVPAKSMAKPGPRAMTKLKRVLRYLKGKTSIGITYTEDADGGD
ELTAYVDSDFAGDQDKGYSTTGAVLYLAGAPVDWISKKQTVLAISTFEAE
AVALSKACTIVIHFRNLLKSLNMKQEQPTVVFEDNTGAIALAMGAKLTPR
TKHIDVKYHHVRYLEEKKIVDVNYIETNLQKADILTKSQGAVKFLQNRLL
LLGV

mRNA from alignment at Scaffold_30:364736..367108+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft499_3a-0001 ID=EsuBft499_3a-0001|Name=EsuBft499_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2373bp|location=Sequence derived from alignment at Scaffold_30:364736..367108+ (Ectocarpus subulatus male Bft15b)
ATGGCCCGGATGGATACTCCAGCCCTGCTTCGCAAGTGGTACAGCAGCAT
GGGCCAGTCGGTGACGAGGAGTATGGTGATGGACGAGATGCGTTCGTTGC
TCTCAAGCAGAAGTACCGTGTTGAGGGTGTATTTCGCATGCAACAGCTCC
ATGANATTCCTGGAGCTGTGCAAGTCCCTCGGAATTACGGTCAAAACTAG
CGCTCCATACACTCCACAGCAGAACTCCATCGCAGAACGTGGATTTGGCA
CCATCATCGGAACTACTCGCAAACTAATGCTGGGCGCACCGCACCTTCCC
AGCGAGCTGTGGGCTGAAGCATTTCAGACCGCCATCTATCTCAAGAATCG
CACACCAACTGAAGTCCTCGGGGGCAAATCCCTACTCGAGCCTGGTATGG
TAGAATCAAACGAGGAAGAAACTAACGACGATAGCGATGAAGAAGCAGGC
CAAAGTACTGCAAAGTCGACACCATCTGTTCCAGAACCACGACGGAGCGC
CAGGGCATCTGCACCGCCGCAAAGGTTGAATCTATTTACGGTGACCTCGG
AGGAGGATGCTCATCAGCAGGTGGAACAAGCTCTTCTGATAGGGGGTGTA
CTCGGAAACGTCGGGACGGGCAACCCTGGAGAAAAAGGTTACAGGCCTCC
CGACCCGACCAACTACGACGACGCAACACGTGGACCAGATGCTGACCACT
GGAGGGGGAGTATGCGCGAAGAAAATCGTTCGCTCGCGGAACTCGATGTA
TACGATTGGGTGAAACGGCCGGCGGACGGTGATAAACTTCCGTCAAGATA
CCTATACAAACGGAAGTACGCAGCAGACGGAGAACTAGCTCGACTGAAGA
GTCGTATCGTGGTCCAAGGCTTCCGTCAAGAAGACACGGGGGAAGACAAG
GCATCATCAGTGGCCACATTGGAGGCGGTACATCTAGTAGTCGCCGTCGC
TGCACAGAATGGCTTTGTTCTATAACAGGCTGACATCAAGACAGCGTTCC
TACATGCCAGGATCCCCGCTAACGCAGACCCGATTTATGTTTGTCCTCCG
AAAGGTTTCGAATGCTCTCCAGAACAAGCACGGCAGGTGTGGCGGCTAAA
GGCATGGCTCTACGGATTGCGTCTCTCCCCGAAAGGCTGGTGCAGCACCT
TTCACGACTTCCTGATTGAGAAAGGGTTCGTACAGAGTAAACCAGACCCC
TGCCTTTACATTCTCGAAGCGGAAGGAGTTATCCTTCTCGTGTACGTTGA
CGACATCCTGTTGTCGGGGAAGGACGAGGAGAAGGTCATGATGGTCATTG
ATCTGCTGAAGGAAGGTTCAACTCAGTGTTCTTGGGGGATGCTCAGCACC
TGCTTGGTATGAAGCTTGAGAGGANGCCTTTACATTCTCGAAGCGGAAGG
AGTTATCCTTCTCGTGTACGTTGACGACATCCTGCTGTCGGGGAAGGACG
AGGAGAAGGTCATGATGGTCGTTGATCTGCTGAAGGAACGGTTCAACACG
GTGTTCTTGGGGGATGCTCAGCACCTGCTTGGTATGAAGCTTGAGAGGAA
CGTCGACGCCGGTACCATATTCCTTTCTCAAGAGACGTACGCAAAGACCG
TGCTCGACCAGTTCGGAATGGCCGAATCGCGCCCGGTGAAGACACCGGCG
GAACCTGGACCTATCAGCATCGAGGAGGAGAAGGTTTTATCTCCAGAGGA
CACCAAATACTACCGGTCCGCCACGGGTAGCCTTCTGTATCTCAGCAGGG
GCTCAAGACCGGACATCACACACTCGGTGATGGTGCCCGCGAAGAGTATG
GCGAAGCCAGGTCCCAGAGCGATGACAAAGCTGAAGCGGGTACTCCGGTA
TCTAAAAGGAAAGACCTCTATCGGAATCACATACACCGAAGACGCCGACG
GCGGAGATGAACTCACGGCGTACGTGGACTCTGATTTTGCAGGTGACCAA
GACAAAGGCTACTCCACAACCGGTGCCGTTCTCTATCTCGCAGGTGCCCC
AGTGGACTGGATATCCAAGAAGCAAACGGTGCTGGCCATCTCAACGTTCG
AGGCTGAAGCCGTTGCCCTGTCCAAGGCGTGCACTATTGTCATCCACTTT
CGTAATTTGCTGAAGTCGCTGAACATGAAGCAGGAGCAGCCCACGGTAGT
GTTTGAGGACAACACAGGCGCTATAGCGCTTGCTATGGGCGCCAAACTCA
CGCCCCGTACTAAACATATCGACGTCAAGTATCACCACGTTCGGTACTTA
GAGGAGAAGAAAATCGTCGACGTCAATTATATCGAGACTAACTTGCAGAA
GGCTGACATCCTGACTAAAAGTCAGGGAGCTGTGAAGTTCCTCCAGAACC
GCCTTCTCTTGCTTGGAGTGTAA

Coding sequence (CDS) from alignment at Scaffold_30:364736..367108+

>EsuBft499_3a-0001 ID=EsuBft499_3a-0001|Name=EsuBft499_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2265bp|location=Sequence derived from alignment at Scaffold_30:364736..367108+ (Ectocarpus subulatus male Bft15b)
ATGGCCCGGATGGATACTCCAGCCCTGCTTCGCAAGTGGTACAGCAGCAT
GGGCCAGTCGGTGACGAGGAGTATGGTGATGGACGAGATGCGTTCGTTGC
TCTCAAGCAGAAGTACCGTGTTGAGGGTGTATTTCGCATGCAACAGCTCC
ATGANATTCCTGGAGCTGTGCAAGTCCCTCGGAATTACGGTCAAAACTAG
CGCTCCATACACTCCACAGCAGAACTCCATCGCAGAACGTGGATTTGGCA
CCATCATCGGAACTACTCGCAAACTAATGCTGGGCGCACCGCACCTTCCC
AGCGAGCTGTGGGCTGAAGCATTTCAGACCGCCATCTATCTCAAGAATCG
CACACCAACTGAAGTCCTCGGGGGCAAATCCCTACTCGAGCCTGGTATGG
TAGAATCAAACGAGGAAGAAACTAACGACGATAGCGATGAAGAAGCAGGC
CAAAGTACTGCAAAGTCGACACCATCTGTTCCAGAACCACGACGGAGCGC
CAGGGCATCTGCACCGCCGCAAAGGTTGAATCTATTTACGGTGACCTCGG
AGGAGGATGCTCATCAGCAGGTGGAACAAGCTCTTCTGATAGGGGGTGTA
CTCGGAAACGTCGGGACGGGCAACCCTGGAGAAAAAGGTTACAGGCCTCC
CGACCCGACCAACTACGACGACGCAACACGTGGACCAGATGCTGACCACT
GGAGGGGGAGTATGCGCGAAGAAAATCGTTCGCTCGCGGAACTCGATGTA
TACGATTGGGTGAAACGGCCGGCGGACGGTGATAAACTTCCGTCAAGATA
CCTATACAAACGGAAGTACGCAGCAGACGGAGAACTAGCTCGACTGAAGA
GTCGTATCGTGGTCCAAGGCTTCCGTCAAGAAGACACGGGGGAAGACAAG
GCATCATCAGTGGCCACATTGGAGGCGGCTGACATCAAGACAGCGTTCCT
ACATGCCAGGATCCCCGCTAACGCAGACCCGATTTATGTTTGTCCTCCGA
AAGGTTTCGAATGCTCTCCAGAACAAGCACGGCAGGTGTGGCGGCTAAAG
GCATGGCTCTACGGATTGCGTCTCTCCCCGAAAGGCTGGTGCAGCACCTT
TCACGACTTCCTGATTGAGAAAGGGTTCGTACAGAGTAAACCAGACCCCT
GCCTTTACATTCTCGAAGCGGAAGGAGTTATCCTTCTCGTGTACGTTGAC
GACATCCTGTTGTCGGGGAAGGACGAGGAGAAGGTCATGATGGTCATTGA
TCTGCTGAAGGAAGGANGCCTTTACATTCTCGAAGCGGAAGGAGTTATCC
TTCTCGTGTACGTTGACGACATCCTGCTGTCGGGGAAGGACGAGGAGAAG
GTCATGATGGTCGTTGATCTGCTGAAGGAACGGTTCAACACGGTGTTCTT
GGGGGATGCTCAGCACCTGCTTGGTATGAAGCTTGAGAGGAACGTCGACG
CCGGTACCATATTCCTTTCTCAAGAGACGTACGCAAAGACCGTGCTCGAC
CAGTTCGGAATGGCCGAATCGCGCCCGGTGAAGACACCGGCGGAACCTGG
ACCTATCAGCATCGAGGAGGAGAAGGTTTTATCTCCAGAGGACACCAAAT
ACTACCGGTCCGCCACGGGTAGCCTTCTGTATCTCAGCAGGGGCTCAAGA
CCGGACATCACACACTCGGTGATGGTGCCCGCGAAGAGTATGGCGAAGCC
AGGTCCCAGAGCGATGACAAAGCTGAAGCGGGTACTCCGGTATCTAAAAG
GAAAGACCTCTATCGGAATCACATACACCGAAGACGCCGACGGCGGAGAT
GAACTCACGGCGTACGTGGACTCTGATTTTGCAGGTGACCAAGACAAAGG
CTACTCCACAACCGGTGCCGTTCTCTATCTCGCAGGTGCCCCAGTGGACT
GGATATCCAAGAAGCAAACGGTGCTGGCCATCTCAACGTTCGAGGCTGAA
GCCGTTGCCCTGTCCAAGGCGTGCACTATTGTCATCCACTTTCGTAATTT
GCTGAAGTCGCTGAACATGAAGCAGGAGCAGCCCACGGTAGTGTTTGAGG
ACAACACAGGCGCTATAGCGCTTGCTATGGGCGCCAAACTCACGCCCCGT
ACTAAACATATCGACGTCAAGTATCACCACGTTCGGTACTTAGAGGAGAA
GAAAATCGTCGACGTCAATTATATCGAGACTAACTTGCAGAAGGCTGACA
TCCTGACTAAAAGTCAGGGAGCTGTGAAGTTCCTCCAGAACCGCCTTCTC
TTGCTTGGAGTGTAA