EsuBft2254_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2254_3a-0001
Unique NameEsuBft2254_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_287contigScaffold_287:81218..85492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LI95
ProteomeIdEsuBft2254_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length32
Hectar predicted targeting categoryother localisation
Evalue1.17e-07
EggNOG OGs2D67V@1|root,2T127@2759|Eukaryota
Ec32 ortholog descriptionF-box and Chromo domain-like protein
Ec32 orthologEc-14_003660.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_3aEsuBft2254_3aEctocarpus subulatus male Bft15bgeneScaffold_287 81218..85492 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_3a-0001-exonagat-exon-2495Ectocarpus subulatus male Bft15bexonScaffold_287 81218..81243 +
EsuBft2254_3a-0001-exonEsuBft2254_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_287 84628..84778 +
EsuBft2254_3a-0001-exonagat-exon-2496Ectocarpus subulatus male Bft15bexonScaffold_287 85349..85492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_3a-0001-cdsEsuBft2254_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_287 81218..81243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_3a-0001EsuBft2254_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_287 81218..85492 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2254_3a-0001 ID=EsuBft2254_3a-0001|Name=EsuBft2254_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=321bp|location=Sequence derived from alignment at Scaffold_287:81218..85492+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCTCCCCCTATACTCTCGCAGGTTCGGTCCCGCCGCCAGCCTTCC
GGAGCTATTCGAGCGCGTCGGACTCGACCCCGGCGACACGGCAGCGACAT
CCGAAGGGCCGTCTGGGATGGTTCGCTTCGCCTTTCGCTCTAGACTGGCG
TGTCCAGTCTTGGGGGATCACGTCGAGGTGGCCTGGAAGGGAAAGTTCAG
GCTGGACGATTGCATGGTGTTCGTCGGGCTGTCGTGGTGGGACGCTAAGG
TTCGGCACGTGGGCTCTCGCTGCTGTACCGTTGTATCATGTGCTGCTCCC
GGGGAAACTCGTGTACACTGA
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protein sequence of EsuBft2254_3a-0001

>EsuBft2254_3 ID=EsuBft2254_3|Name=EsuBft2254_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=106bp
MWLPLYSRRFGPAASLPELFERVGLDPGDTAATSEGPSGMVRFAFRSRLA
CPVLGDHVEVAWKGKFRLDDCMVFVGLSWWDAKVRHVGSRCCTVVSCAAP
GETRVH
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mRNA from alignment at Scaffold_287:81218..85492+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2254_3a-0001 ID=EsuBft2254_3a-0001|Name=EsuBft2254_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4275bp|location=Sequence derived from alignment at Scaffold_287:81218..85492+ (Ectocarpus subulatus male Bft15b)
ATGTGGCTCCCCCTATACTCTCGCAGGTATGGAATTGTTGTTGTTGTTGT
CGTTGTTGTTGTTGTTGTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTCTCACATT
AGCTCTTTAGTCCACAATAAAATGGGGAGCCCGTGGTCTCAAAACCCGGC
ACATACGACGCCGCGGGGAAACAAAACAAAAATAGGGTACAGCCCACTCG
GAAAAAGAAAACAAAATGATAAAAAGAAAAGAACACGTACCGCACCGACC
GTTCGAGAAAAAAGCCCTCGGAAACTGATTAAAGAAAAACAATAATAAAA
AATATACATACAGGAGGACGCTTCCCACACCCTCCTAAAGAAAAATCAAA
GGGGAACGTACCAACACCAGGCACTACGCATCAGGGCATGGGAGTAACGG
AGCAAACAGGACAAAGAGGCGGCAGATGGGCAGACAGCCAGATGTACAAC
AACAAAAGCAACAGCAAAAGCGAGATCAAGGTACCGAACATAGCAGAGTA
GGCAGGGAGGGCATGAAAAAAAAAGAAACACAGCACAGAGGCCGAAGGCA
ATACAGAGGACATACATAAAGGAGTATGGCATACAGCAGGGAGGGAAACA
GGGCACAACAACATCAGCCGGGTACATAGTTCGCCACAAGTGCTGCCTCG
GCCGCCCTACTCGCTTCTACAGCAGTGCCCGGTCGCCGTTTCTTCCCCCC
CACCGCCGCTTCGCCGGTTCTCGTTCTCTTCGGTCCTGAGATGGTCGTAC
TCTCTGCTTCTGCTTCCCTCGCGCGCTGGCGCTTCGCGGACGCTTCCGCC
TCCTGCCTGTGCCATTTCCTCATGAACCATGCCGCCCCGTCCTCGACCTT
GTTGTACCACACCTCCGGGTCCTTGGCGCTCTCTTTCCATTTACCCCCTT
CCTTTTCGTCTCCCATGTTGAAGGCCATTAGGTCCTCTCCTAGACGAGAC
ACCCAGTCGCTCTCCTGCCCGCCCCGGTATCCCACGCCCCCCGCCATCGC
TCCTAACAGCATGCGCTTGGGGAGGCGGCTGTCCTCCATGCGCATAACAA
AGCCCGCGAAACACAGTCTCCGTTTGCGTGCGGTGGCCTCGATGGTTTCC
TCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCCGTCGCCTGTCGTACA
TCGAAGCACTGTCCCGGCGGTAGCACTTCCACGCTCGACAGCTGCGGCTC
GTGATCTCCCGTTCGGCCTTTCCGTCCGCGGAGATGGTACTTCCGAGGTA
CACAAACCGATCTGTCTGGTTGTACGTCCGGCCGGCGGCACTGACCGTGA
GCGGGCGTTCCTTGATGCCTTTCGGCAGAGTGCACATGATCTCCGTCTTT
GGCTCCGATACCATCAGTCCGAACAGGCCGGCCACGCGCGCGATGACCGA
CATCATCCTCTCGAGACTCTCCGGCGAGCGCGAGACGATGGCCGCGTCGT
CAGCGTAGAGCATGGCCCACAGGGGCTCCGCGTCCGTCATCACCGTCGTC
TTCTTCCCCGCTGACCTGTCCTTCTTGCCCGTGTACTCCACTTGTGTCCC
GATCTTGACCATGTCCGCCGTCACCTTGGGGTCCTTGTCGAACTCGGCCA
CGGCGACCATGAGCATCGCGGCAAAGAACAAGTTGAACAGCAGCGGGGCC
AGGTTGCATCCCTGTCGGAGGCCTTGGCCCACGTCGAACCATTCCGAGTA
CTGCCCGTCGTCCGTTCGGACGCGCGCCCTCATGCCCTCGTGGAAGTGGC
GAATGACCGCCAGCATCTTCGGGGGCACGGCGAAGCGTCGGAGCACGTTC
CACAGTAGGTCTCGGTCCGTCGAATCGCATGCCTTGGTGAGGTCGACGAA
GCACGCCAACACCGCAGTACTCTTCTTCCTCGCGAGCTCATGGAGCCGCT
GGATGGCGAACAGCATGTCGAGCGTCGACCGGTGTGGGCGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCTCGCG
ATGCTGCGCTTCTTCCACGCCGCCTTGAGCATCGCCTTCAGGGTCGCCTC
GCAGGCGCTGTCCTTTGAGGCCCCATGCAGTTGCTGCTGGGCTGCCTTAA
TCTCTGTACATGCTTCGGAGATCTTGTGCTGCGCTTCGCTCGTGTACCAG
CCTCTCTGCCCTCGTGCGCACCTCGCCAGCGGCGCGGTCTCAGCAGCGGC
CGACACCACCGTAGCCGTCAGCTCGGCGGCGTTATCTCCCGTTGGCCGCC
TGAGCGCCGTGGGCGGAGGGCGGCTGGAGGTCCTGTTTTGGAAGGCGACC
CGTAGGTGTTTGTTCTTCGTCAACCGCTCGAGGTCGATACGGATCCGGCT
GCTTCCGCTGTTCCCCCGTACTTGTCCGTTGGGTGCGACATGGGGGAGGA
GGCGGACAGTCGTAAGCACGAGGTTGTGGTCAGAGTCTTTGAAGTCGACA
CGTTTGATGGAGACATTTCGCACGGAACATACCACCCCCGCCGTACAACT
GTGCTTCCTTCTACAGCACGAAAGTCGTGTGTACTAGTGTAAATCTCTTT
TCTGGAATGATTTTTTTAATACGAAAGTGATCTACACCACGACGATATCT
CGCGAGCGTATTTTCTCCGCCGCATCCTCATCCTTCGAACATTCTGGTTT
GTCGGGTTTGTGCCATAACCGTTGTATTTGCACACTTTCTTCCAGCAGCC
GCACGGTCATGATCGCACTTGCAGCTGCCGGTACAACCAGCGCTCCATTT
TGAAACATGGTACAGTACTCGGCCCCGCCCCCCCCACGGGTCCTTGCCGC
AGTCTCGTACCTCGAGGTAGCTCCTCCGCAGCCTGTGAAGATGTTGTCCC
CTATGCTTTTGATTGACTTCTCTCTCACGCCTTGTCCTGTGTATTCGATT
GAACATTCTCCTGACGGCTTCTACATCCAAATATTTTCCTCATTGTACGT
CTGATTCTCTTGTATCTCTCGGATTGTCCTGTGTAGTCGATTGATGGCTC
TCATGACAACTTCTACATCCAAATGGTTCTTCTCAGGGAGTATCTGATTC
ACCTCCCTGTCGCGGATGGTCCTGAGGACAATTCGATTGAATCTCTGCGG
CTATTTTCAGGTTCGGTCCCGCCGCCAGCCTTCCGGAGCTATTCGAGCGC
GTCGGACTCGACCCCGGCGACACGGCAGCGACATCCGAAGGGCCGTCTGG
GATGGTTCGCTTCGCCTTTCGCTCTAGACTGGCGTGTCCAGTCTTGGGGG
ATCACGTCGAGGTGATGGAGAAGGGGGGCAGAGAAAGATGGGGTCGTCAT
GCCAGTCAGTCTGTTGTTGTAGCGGCCCTCGCTCGTGCTGGTCCTTCCGC
ACGGGAAGTGAGTGGCGCTTATGCCTTATGCGACGTACCCGAGGAATGTT
ACGAGAAATGGTATTCCGACATGTCCACCATTGCGTGCGACCAAGTCGTA
AGCGATACTGCGAGGAGCTGCGGGAAGTGGCCAGTGCGGCATTTTCCCGG
TGATGGTTGATGTTTTTACCTGACTTCTTGTCCGTTCATGTGCATGGCCT
AACTATATTGTGCTACACCGGTGCAGCTAATGACCAAAGGTCTTGTCCCC
CTAGCGAGACACTTGGTGTTGTTTCGGTTTCATAACTCGCCTCCCACGAG
TGTGTTTACCCCACCTCCGCTTGATGGCGCATACAAACCCTTGGCGCCAG
TTCCAAACGGGTCTCAACTTCACACGGCCAGATTTCTTTCGAATCAGTCG
GTTGGCGGTACGCCGCTCGCTCGCGGGTTTTTTCCGGTGCTGGTCTCGTC
ATACCATGGCACTCGCTCGTCCTGTCCTCAGGTGGCCTGGAAGGGAAAGT
TCAGGCTGGACGATTGCATGGTGTTCGTCGGGCTGTCGTGGTGGGACGCT
AAGGTTCGGCACGTGGGCTCTCGCTGCTGTACCGTTGTATCATGTGCTGC
TCCCGGGGAAACTCGTGTACACTGA
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Coding sequence (CDS) from alignment at Scaffold_287:81218..85492+

>EsuBft2254_3a-0001 ID=EsuBft2254_3a-0001|Name=EsuBft2254_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=321bp|location=Sequence derived from alignment at Scaffold_287:81218..85492+ (Ectocarpus subulatus male Bft15b)
ATGTGGCTCCCCCTATACTCTCGCAGGTTCGGTCCCGCCGCCAGCCTTCC
GGAGCTATTCGAGCGCGTCGGACTCGACCCCGGCGACACGGCAGCGACAT
CCGAAGGGCCGTCTGGGATGGTTCGCTTCGCCTTTCGCTCTAGACTGGCG
TGTCCAGTCTTGGGGGATCACGTCGAGGTGGCCTGGAAGGGAAAGTTCAG
GCTGGACGATTGCATGGTGTTCGTCGGGCTGTCGTGGTGGGACGCTAAGG
TTCGGCACGTGGGCTCTCGCTGCTGTACCGTTGTATCATGTGCTGCTCCC
GGGGAAACTCGTGTACACTGA
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