EsuBft1094_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1094_7a-0001
Unique NameEsuBft1094_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_26contigScaffold_26:287770..288180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1094_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length41
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_7aEsuBft1094_7aEctocarpus subulatus male Bft15bgeneScaffold_26 287770..288180 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_7a-0001-exonEsuBft1094_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_26 287770..288180 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_7a-0001-cdsEsuBft1094_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_26 287770..287928 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_7a-0001-exonagat-three_prime_utr-914Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_26 287929..288180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_7a-0001EsuBft1094_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_26 287770..287928 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1094_7a-0001 ID=EsuBft1094_7a-0001|Name=EsuBft1094_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=411bp|location=Sequence derived from alignment at Scaffold_26:287770..288180+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAGCCACGACTACTTCCTCATCAACCCCCATGGGCTCCCAATTTT
TTTGAATGCACCAAAAAAGCTGGTGGACTCCAGTATGCCCCATCGTGCCC
CATGGTGCCCCATGAGGCCTCATGGGGCACCATCAGGCCTCATGAGGCCT
ATAGTTTAATTTTATGTTTCCCTTTTCCCGCCTTTTTCGATATAGTTTCT
TGTGGGATCTCATGGTGCTGTTATGGCATTTGGAGGTAGACATGTGATCG
TGGTTGACCATGGTTGTTTCGCGCCGTCGGATGCTAAGACGTGACGTCAT
GCTAGATCAGGGCTTTATGCCGAGTCATGTGCCCTTCTGTTCAATGTGTG
CGTACAGACGATCTCTGATCGTGTGTGCGTGGGATATTGTGAGTTGGCTT
GGAAAGCGTTA
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protein sequence of EsuBft1094_7a-0001

>EsuBft1094_7 ID=EsuBft1094_7|Name=EsuBft1094_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=52bp
MGSHDYFLINPHGLPIFLNAPKKLVDSSMPHRAPWCPMRPHGAPSGLMRP
IV
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mRNA from alignment at Scaffold_26:287770..288180+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1094_7a-0001 ID=EsuBft1094_7a-0001|Name=EsuBft1094_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=411bp|location=Sequence derived from alignment at Scaffold_26:287770..288180+ (Ectocarpus subulatus male Bft15b)
ATGGGGAGCCACGACTACTTCCTCATCAACCCCCATGGGCTCCCAATTTT
TTTGAATGCACCAAAAAAGCTGGTGGACTCCAGTATGCCCCATCGTGCCC
CATGGTGCCCCATGAGGCCTCATGGGGCACCATCAGGCCTCATGAGGCCT
ATAGTTTAATTTTATGTTTCCCTTTTCCCGCCTTTTTCGATATAGTTTCT
TGTGGGATCTCATGGTGCTGTTATGGCATTTGGAGGTAGACATGTGATCG
TGGTTGACCATGGTTGTTTCGCGCCGTCGGATGCTAAGACGTGACGTCAT
GCTAGATCAGGGCTTTATGCCGAGTCATGTGCCCTTCTGTTCAATGTGTG
CGTACAGACGATCTCTGATCGTGTGTGCGTGGGATATTGTGAGTTGGCTT
GGAAAGCGTTA
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Coding sequence (CDS) from alignment at Scaffold_26:287770..288180+

>EsuBft1094_7a-0001 ID=EsuBft1094_7a-0001|Name=EsuBft1094_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=159bp|location=Sequence derived from alignment at Scaffold_26:287770..288180+ (Ectocarpus subulatus male Bft15b)
ATGGGGAGCCACGACTACTTCCTCATCAACCCCCATGGGCTCCCAATTTT
TTTGAATGCACCAAAAAAGCTGGTGGACTCCAGTATGCCCCATCGTGCCC
CATGGTGCCCCATGAGGCCTCATGGGGCACCATCAGGCCTCATGAGGCCT
ATAGTTTAA
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