EsuBft104_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft104_17a-0001
Unique NameEsuBft104_17a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_255contigScaffold_255:434471..437494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft104_17
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length182
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft104_17aEsuBft104_17aEctocarpus subulatus male Bft15bgeneScaffold_255 434471..437494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_17a-0001EsuBft104_17Ectocarpus subulatus male Bft15bpolypeptideScaffold_255 435360..437494 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_17a-0001-exonagat-exon-6698Ectocarpus subulatus male Bft15bexonScaffold_255 434471..434520 -
EsuBft104_17a-0001-exonEsuBft104_17a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_255 435126..435943 -
EsuBft104_17a-0001-exonagat-exon-6697Ectocarpus subulatus male Bft15bexonScaffold_255 436534..437494 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_17a-0001-exonagat-three_prime_utr-482Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_255 434471..434520 -
EsuBft104_17a-0001-exonagat-three_prime_utr-483Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_255 435126..435359 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_17a-0001-cdsEsuBft104_17a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_255 435360..435943 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft104_17a-0001 ID=EsuBft104_17a-0001|Name=EsuBft104_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1829bp|location=Sequence derived from alignment at Scaffold_255:434471..437494- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTGCCCGCACGAGATGCTCCACGGGAAGCCCCTTCTATTTCATCC
TCTGCCCTTCCTCATGCCGGGTATCGACAACGCGCGTGTCTCCGCCAAGA
TCGCGCCGAAGGGCGGTCGGTGTTTTTACCTCAACCCTGGCGACTTCGTC
TCCCACGACTGCTACAAGGTCATTTTCCCCGCCGGCGCCGCGGGGTTGTT
TGGGGTTACCGCCGCCAGCCGTTCGTCGGTCTCGTGCCCACGCACAAACA
GGGGTGCCGTTTCTGCACCGGCGGCGGCGGCGACAGAGGCACCGGCGCCT
TCGATCCTCGCGGCAGCGGCAGAAGTAAGAGCACCGGCGGCGGCGACGAC
GACAGCTGCAGGAGCGCCGGCGGCAGTGCGGACGGCTTCGGCCAGAGCCA
CACCGGCGATCACGACAGCAGCCGGAGGCGCGCCGGCGGCAGTGCGGACA
GCTCCGGCCAGAACCCCGTCGACGGCAGCAATACCACCGGAAGCAGTGGC
GGCGGCGGCGGTATCGATGGCGGGGGGAACGACAGCAGAGGCAGCAGCAG
CGTCGTCCTCGGTCGCCGCGTTGGCGCCGGGCACTCAGACGGACGCAGCG
ACGATGGCGGCGGCGGCGGCGGGGAGGGGAACGGCAGCAGCAGGAGCAGC
AGCGTTGTCCCCGGTCGCCGCGCTGGCATCGGAAGGAGTGGCGGCGGTGC
GACGGCCAGAGCGCCGTCCCCGACAGCAGCATCGGCGGTGGCGGCATCGG
TGCCGGGGGAACAGCAGCGGCAGCAGCAGCTGCGGCGTCTGCGGTCGCCG
CATTGGCGTTGGATGTCCAGACGGCCGCAGCGGCGACGGCGTCGACATCG
GTGACGGGGGTAACGACAGCGGCGACAGCAGCAGCGGCATCCCCGGTCGC
CGCGTTGGCGTCGAGTGTCCAGACAGCCGCAGGGGTGGCGGCGGCGGCAC
CGGTGACGGAGGAACGGGAGTGGAAGCTCTGGCGGCGGCAACGACGGCGG
CCGCAGTAGCGACGGGAGTGGCGGCTTCGGCCAGAGCTCCTGCGGCGACA
CCGGCGGCAGCAGGAGCAGCGACGGGAGTGGTGGCTTCGGCCAGAGCTCG
GACGGCAGCAGCAGACGGCAGCGGCGGCTTCGGCCAGAGCCCCGTCGGCG
GCNTGGGGTGGCGTCCTTCGATAGGGGCAGGAACGGGAGTGGAAGCTCTG
GCGGCGGCAACGACGGCGGCCGCAGTAGCGACGGGAGTGGCGGCTTCGGC
CAGAGCTCCTGCGGCGACACCGGCGGCAGCAGGAGCAGCGACGGGAGTGG
TGGCTTCGGCCAGAGCTCGGACGGCAGCAGCAGACGGCAGCGGCGGCTTC
GGCCAGAGCCCCGTCGGCGGCAGCGGCGACAACGGCGGCGGGGGTAGAGG
CGGCAGCAGCGACGTCACCGGCAGCCGTGTTGGCGCTGGAACTCATGACA
GTTGTGGCGGCGGGGGAAGTGCAACGGCGGCGATGGCAGCGGCGGCAGCA
GCAGTGGCGCCCTCGAGTCGACCGGGAACGGGTAGGACACGGTGACAGCG
ACGACCTCACGTTGTTACAGCCAAGTGGGAGAACATGTGAAACGTTGGCA
AGTTTGTGCGGTTTTGTGAGCGGGCATGGACGTTTTAGCTTCGCCATTTG
GCTTCGCCTTTTTTTTTTAGTTCTGTTTTTCCCTTGTTAGCGAACCGTGC
ACTTTGATCCAGAAAACACGTGTGTGCCACGGCGTGCGCGTAGTGTTTCT
TTTTTTTTGTACTTGTTTTCATGATAATTATATTAGCTCGGGGTGAATTT
TTGGAGCTGACAGCAGGGGGGCTGTTCGC
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protein sequence of EsuBft104_17a-0001

>EsuBft104_17 ID=EsuBft104_17|Name=EsuBft104_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=514bp
MLCPHEMLHGKPLLFHPLPFLMPGIDNARVSAKIAPKGGRCFYLNPGDFV
SHDCYKVIFPAGAAGLFGVTAASRSSVSCPRTNRGAVSAPAAAATEAPAP
SILAAAAEVRAPAAATTTAAGAPAAVRTASARATPAITTAAGGAPAAVRT
APARTPSTAAIPPEAVAAAAVSMAGGTTAEAAAASSSVAALAPGTQTDAA
TMAAAAAGRGTAAAGAAALSPVAALASEGVAAVRRPERRPRQQHRRWRHR
CRGNSSGSSSCGVCGRRIGVGCPDGRSGDGVDIGDGGNDSGDSSSGIPGR
RVGVECPDSRRGGGGGTGDGGTGVEALAAATTAAAVATGVAASARAPAAT
PAAAGAATGVVASARARTAAADGSGGFGQSPVGGXGWRPSIGAGTGVEAL
AAATTAAAVATGVAASARAPAATPAAAGAATGVVASARARTAAADGSGGF
GQSPVGGSGDNGGGGRGGSSDVTGSRVGAGTHDSCGGGGSATAAMAAAAA
AVAPSSRPGTGRTR
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mRNA from alignment at Scaffold_255:434471..437494-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft104_17a-0001 ID=EsuBft104_17a-0001|Name=EsuBft104_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3024bp|location=Sequence derived from alignment at Scaffold_255:434471..437494- (Ectocarpus subulatus male Bft15b)
ATGCTGTGCCCGCACGAGATGCTCCACGGGAAGCCCCTTCTATTTCATCC
TCTGCCCTTCCTCATGCCGGGTATCGACAACGCGCGTGTCTCCGCCAAGA
TCGCGCCGAAGGGCGGTCGGTGTTTTTACCTCAACCCTGGCGACTTCGTC
TCCCACGACTGCTACAAGGTCATTTTCCCCGCCGGCGCCGCGGGGTTGTT
TGGGGTTACCGCCGCCAGCCGTTCGTCGGTCTCGTGCCCACGCACAAACA
GGGGTGCCGTTTCTGCACCGGCGGCGGCGGCGACAGAGGCACCGGCGCCT
TCGATCCTCGCGGCAGCGGCAGAAGTAAGAGCACCGGCGGCGGCGACGAC
GACAGCTGCAGGAGCGCCGGCGGCAGTGCGGACGGCTTCGGCCAGAGCCA
CACCGGCGATCACGACAGCAGCCGGAGGCGCGCCGGCGGCAGTGCGGACA
GCTCCGGCCAGAACCCCGTCGACGGCAGCAATACCACCGGAAGCAGTGGC
GGCGGCGGCGGTATCGATGGCGGGGGGAACGACAGCAGAGGCAGCAGCAG
CGTCGTCCTCGGTCGCCGCGTTGGCGCCGGGCACTCAGACGGACGCAGCG
ACGATGGCGGCGGCGGCGGCGGGGAGGGGAACGGCAGCAGCAGGAGCAGC
AGCGTTGTCCCCGGTCGCCGCGCTGGCATCGGAAGGAGTGGCGGCGGTGC
GACGGCCAGAGCGCCGTCCCCGACAGCAGCATCGGCGGTGGCGGCATCGG
TGCCGGGGGAACAGCAGCGGCAGCAGCAGCTGCGGCGTCTGCGGTCGCCG
CATTGGCGTTGGATGTCCAGACGGCCGCAGCGGCGACGGCGTCGACATCG
GTGACGGGGGTAACGACAGCGGCGACAGCAGCAGCGGCATCCCCGGTCGC
CGCGTTGGCGTCGAGTGTCCAGACAGCCGCAGGGGTGGCGGCGGCGGCAC
CGGTGACGGAGGTATGTGACAAAGAGTTGGAGTAAGCGGTTGGTGCGACA
ACCACGCCATTGCCAGTCTTGGAGGAGCTTCATAGCCAACGGGTTGGGGG
GAACGTGAGCAACAGCAGCAGCAGCAGCCGTAGCAGCAGCAGTAGCAGCA
GCAGCAGCAGCAGCAAGGACAGCGGCGGCGACGAGAGAGGGAACGAGGAG
TTGGATGAAATCTGGAATGGAGCCCCGACGCACCCTTTCGGCCCCGGGAA
GGCTGAGGGGGACGTGAGCAGCAGCAGAAGCAGCAGCAGCTGTAGCAGCA
GTGGCGAGGACAGCGGCGGCGATGGGCGCGGGGACGAGGGGTTGGATAAA
ATCTGGAGTGGAGCCCCGACGCACCCTTTCGACCCCGGGAAGACTGAGGA
GGAAGTGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCG
AGGAAAGCGGTGGTGATGGGAGCGGGGATGAGGGCTTAGATAAAACTTTG
AGTAGAGCCCGGACGCACCCGTTCGACCCCGGTAAGACATCTTCGCGTGG
CGCGAGGAGACGGGGGGCGGTACCTGGGGTGGCGTCCTTCGATAGGGGCA
GGAACGGGAGTGGAAGCTCTGGCGGCGGCAACGACGGCGGCCGCAGTAGC
GACGGGAGTGGCGGCTTCGGCCAGAGCTCCTGCGGCGACACCGGCGGCAG
CAGGAGCAGCGACGGGAGTGGTGGCTTCGGCCAGAGCTCGGACGGCAGCA
GCAGACGGCAGCGGCGGCTTCGGCCAGAGCCCCGTCGGCGGCNTGGGGTG
GCGTCCTTCGATAGGGGCAGGAACGGGAGTGGAAGCTCTGGCGGCGGCAA
CGACGGCGGCCGCAGTAGCGACGGGAGTGGCGGCTTCGGCCAGAGCTCCT
GCGGCGACACCGGCGGCAGCAGGAGCAGCGACGGGAGTGGTGGCTTCGGC
CAGAGCTCGGACGGCAGCAGCAGACGGCAGCGGCGGCTTCGGCCAGAGCC
CCGTCGGCGGCAGCGGCGACAACGGCGGCGGGGGTAGAGGCGGCAGCAGC
GACGTCACCGGCAGCCGTGTTGGCGCTGGAACTCATGACAGTTGTGGCGG
CGGGGGAAGTGCAACGGCGGCGATGGCAGCGGCGGCAGCAGCAGTGGCGC
CCTCGAGTCGACCGGGAACGGGTAGGACACGGTGACAGCGACGACCTCAC
GTTGTTACAGCCAAGTGGGAGAACATGTGAAACGTTGGCAAGTTTGTGCG
GTTTTGTGAGCGGGCATGGACGTTTTAGCTTCGCCATTTGGCTTCGCCTT
TTTTTTTTAGTTCTGTTTTTCCCTTGTTAGCGAACCGTGCACTTTGATCC
AGAAAACACGTGTGTGCCACGGCGTGCGCGTAGTGTTTCTTTTTTTTTGT
ACTTGTTTTCATGATAATTGTACGCTGCGACAAGATGAGCATTGCCACAA
CCTGTGGAATAGGAAGCAGCACGTGGGCATATATACATTTTTTCCTTGAT
TCTTGTTATGTTTCCAGTCGCCTTTAACCTTGCAGCTGAATACCTTATAT
GATTTCCGTATTCTTTGGAGGGAGTGCGTCAGTCGCGTTTTTTTCTGCGA
ACTGGACACTTCAGCACATAGGATTTTTCGATACTTTGGTTCTTATGTTA
GGTTGTGAGTTAAGAATGGTCGCTCTCCGCGGTGTGTTTCTGGCCGCGCG
AACGAAATGGAATGATACCGCGTTGTTTGACATGCGTGAAGGCATACCGC
TCAGGGAGCAGGGGGGCTTTTGGAGCTCCAGTTGAGGAGGCACTTTGCAT
ACGGTACGAACTTTTTCTGGAGTTTGATGCCTTGTGTGTTCCGTGTTTTC
ATGTTTCTGGTTGGCATCGCATGTTTTGCTGCTCTTGCATCGAAAACCAT
GGGGGGGGATGTCATGTATGACCATGATTCTAGAGGGCATGAGCAGCAAT
CGAATTGGTTTGGTTCTGGTCTTGCCTAATTGTGTGTTGGTGAACGGCAA
AGCAGGGGGGCTGTTGGCATCGAGATATTAGCTCGGGGTGAATTTTTGGA
GCTGACAGCAGGGGGGCTGTTCGC
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Coding sequence (CDS) from alignment at Scaffold_255:434471..437494-

>EsuBft104_17a-0001 ID=EsuBft104_17a-0001|Name=EsuBft104_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1545bp|location=Sequence derived from alignment at Scaffold_255:434471..437494- (Ectocarpus subulatus male Bft15b)
ATGCTGTGCCCGCACGAGATGCTCCACGGGAAGCCCCTTCTATTTCATCC
TCTGCCCTTCCTCATGCCGGGTATCGACAACGCGCGTGTCTCCGCCAAGA
TCGCGCCGAAGGGCGGTCGGTGTTTTTACCTCAACCCTGGCGACTTCGTC
TCCCACGACTGCTACAAGGTCATTTTCCCCGCCGGCGCCGCGGGGTTGTT
TGGGGTTACCGCCGCCAGCCGTTCGTCGGTCTCGTGCCCACGCACAAACA
GGGGTGCCGTTTCTGCACCGGCGGCGGCGGCGACAGAGGCACCGGCGCCT
TCGATCCTCGCGGCAGCGGCAGAAGTAAGAGCACCGGCGGCGGCGACGAC
GACAGCTGCAGGAGCGCCGGCGGCAGTGCGGACGGCTTCGGCCAGAGCCA
CACCGGCGATCACGACAGCAGCCGGAGGCGCGCCGGCGGCAGTGCGGACA
GCTCCGGCCAGAACCCCGTCGACGGCAGCAATACCACCGGAAGCAGTGGC
GGCGGCGGCGGTATCGATGGCGGGGGGAACGACAGCAGAGGCAGCAGCAG
CGTCGTCCTCGGTCGCCGCGTTGGCGCCGGGCACTCAGACGGACGCAGCG
ACGATGGCGGCGGCGGCGGCGGGGAGGGGAACGGCAGCAGCAGGAGCAGC
AGCGTTGTCCCCGGTCGCCGCGCTGGCATCGGAAGGAGTGGCGGCGGTGC
GACGGCCAGAGCGCCGTCCCCGACAGCAGCATCGGCGGTGGCGGCATCGG
TGCCGGGGGAACAGCAGCGGCAGCAGCAGCTGCGGCGTCTGCGGTCGCCG
CATTGGCGTTGGATGTCCAGACGGCCGCAGCGGCGACGGCGTCGACATCG
GTGACGGGGGTAACGACAGCGGCGACAGCAGCAGCGGCATCCCCGGTCGC
CGCGTTGGCGTCGAGTGTCCAGACAGCCGCAGGGGTGGCGGCGGCGGCAC
CGGTGACGGAGGAACGGGAGTGGAAGCTCTGGCGGCGGCAACGACGGCGG
CCGCAGTAGCGACGGGAGTGGCGGCTTCGGCCAGAGCTCCTGCGGCGACA
CCGGCGGCAGCAGGAGCAGCGACGGGAGTGGTGGCTTCGGCCAGAGCTCG
GACGGCAGCAGCAGACGGCAGCGGCGGCTTCGGCCAGAGCCCCGTCGGCG
GCNTGGGGTGGCGTCCTTCGATAGGGGCAGGAACGGGAGTGGAAGCTCTG
GCGGCGGCAACGACGGCGGCCGCAGTAGCGACGGGAGTGGCGGCTTCGGC
CAGAGCTCCTGCGGCGACACCGGCGGCAGCAGGAGCAGCGACGGGAGTGG
TGGCTTCGGCCAGAGCTCGGACGGCAGCAGCAGACGGCAGCGGCGGCTTC
GGCCAGAGCCCCGTCGGCGGCAGCGGCGACAACGGCGGCGGGGGTAGAGG
CGGCAGCAGCGACGTCACCGGCAGCCGTGTTGGCGCTGGAACTCATGACA
GTTGTGGCGGCGGGGGAAGTGCAACGGCGGCGATGGCAGCGGCGGCAGCA
GCAGTGGCGCCCTCGAGTCGACCGGGAACGGGTAGGACACGGTGA
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