EsuBft1057_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1057_2a-0001
Unique NameEsuBft1057_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:595464..599264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1057_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length127
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-02_003670.2
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1057_2aEsuBft1057_2aEctocarpus subulatus male Bft15bgeneScaffold_246 595464..599264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1057_2a-0001EsuBft1057_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 595725..598831 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1057_2a-0001-exonagat-exon-50898Ectocarpus subulatus male Bft15bexonScaffold_246 595464..595769 +
EsuBft1057_2a-0001-exonagat-exon-50896Ectocarpus subulatus male Bft15bexonScaffold_246 596078..596087 +
EsuBft1057_2a-0001-exonagat-exon-50897Ectocarpus subulatus male Bft15bexonScaffold_246 597060..597172 +
EsuBft1057_2a-0001-exonagat-exon-50899Ectocarpus subulatus male Bft15bexonScaffold_246 598190..598544 +
EsuBft1057_2a-0001-exonEsuBft1057_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 598776..599264 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1057_2a-0001-exonagat-five_prime_utr-345Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_246 595464..595724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1057_2a-0001-cdsEsuBft1057_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 595725..595769 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1057_2a-0001-exonagat-three_prime_utr-550Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 598832..599264 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1057_2a-0001 ID=EsuBft1057_2a-0001|Name=EsuBft1057_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1273bp|location=Sequence derived from alignment at Scaffold_246:595464..599264+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCGCGGGAGCTGTTTCTGGCCGGCCGGCTTGTGCTAAGAAGAGCCAGACA
CAAGAAGCACAGGAAGCACAAGAAGCGACATGCGGGGTCGGTCCCCTTGC
TTCCCCCTCGCGATGTGCCTTGCACACGGCACGAAACCCCTTGGTGGCCT
TCATTTTTTAGTTTTGACACACGTATTGTTTTGTTTTGTTTTTGTTCGTG
CCCCCCACGTTTTTGTTCCTCCTTGGGGGATCATCGCAGTCTGCGGACAC
CGGGGGAATTGATGCCATCCTGGTCCTCGCAGAGCTACACCTGGCTGGAT
TTAAAGGATGATGTCGGAGCGCTGGAGAACTCTTGCAAGAAGGCGGCCGG
GCTGTACCAGAAGTGCGCCAACCTCTGCATCAAGGACGGAGCGTTGGCGC
GCGGCAGGCTGACGTTCGAGCAGGGTCAGCTGCTGGATAGGAGCATGGCC
GCCGCCCCCGCGGGCACTTCCTGGCCCTCGTCGCTGGTGCGTCGGGCGTG
GGAAAGCCTTGTTGGCGACGGCGACGGCGACGGCGGCGGCGGTGGCGGTG
CCGATAGCGGGCCAAGCGGTGGCGATGAGCGCGTCAAAGACGCAATGGCA
AGCGGTTGGCCTGACGAAGAACGAAGCGCCGGTGGTAGTGGGCCCGGTAG
CGGGAGTGGGATGAGGAGGAGGAGGAGGAGGAGCGGTGTTGGCGGCGTTG
CCGACGCCGTCCGCCAGATGGGTGGGGACCCCGAAGCCATGGCGCGCGTA
GGCTCGCCGCTGAGCAGGGGGACTCAGAAGCGAGGACAACAAATCACACC
CCTCATGTGGTACATCCATCGGGAATATTTTTCTGGATGAACATGGGCGC
AATGGGGTGACACAAGATACCACCAATTCCTTCGTACACAACATCTCGCC
CAGTAGTATGCTTGTTTTGGGAAGCTCAAAATGTCAATCAAAAGGGGGGC
GTTATCTTGCGTAGTAGCATGGCATGACGAGGCGCCAAGTATCACGTGAG
AACACCAACACACCTTCGTCTCCCCTTCTCTCTGATATATCAATCGCGCA
CGCACACGTTTTTTTTTTTTGGCGGCTCGGCGAAAAGGTGCGACATAGCG
GACCACCTGTATCGGCAGGCGAAGGACATGGGGGCGTCGCGCCGGGCACC
TGTTGGTTGTCCGCGTGGGCCCGAAGTACCACCACCATGACGACCAGCAA
CAGCAAGTACATCAACAACGACGATGGCAGCAGAAGAAGCGCCAGTGACG
ACGAGAACAACCATCAGCAGAGG
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protein sequence of EsuBft1057_2a-0001

>EsuBft1057_2 ID=EsuBft1057_2|Name=EsuBft1057_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=192bp
MPSWSSQSYTWLDLKDDVGALENSCKKAAGLYQKCANLCIKDGALARGRL
TFEQGQLLDRSMAAAPAGTSWPSSLVRRAWESLVGDGDGDGGGGGGADSG
PSGGDERVKDAMASGWPDEERSAGGSGPGSGSGMRRRRRRSGVGGVADAV
RQMGGDPEAMARVGSPLSRGTQKRGQQITPLMWYIHREYFSG
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mRNA from alignment at Scaffold_246:595464..599264+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1057_2a-0001 ID=EsuBft1057_2a-0001|Name=EsuBft1057_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3801bp|location=Sequence derived from alignment at Scaffold_246:595464..599264+ (Ectocarpus subulatus male Bft15b)
CCGCGGGAGCTGTTTCTGGCCGGCCGGCTTGTGCTAAGAAGAGCCAGACA
CAAGAAGCACAGGAAGCACAAGAAGCGACATGCGGGGTCGGTCCCCTTGC
TTCCCCCTCGCGATGTGCCTTGCACACGGCACGAAACCCCTTGGTGGCCT
TCATTTTTTAGTTTTGACACACGTATTGTTTTGTTTTGTTTTTGTTCGTG
CCCCCCACGTTTTTGTTCCTCCTTGGGGGATCATCGCAGTCTGCGGACAC
CGGGGGAATTGATGCCATCCTGGTCCTCGCAGAGCTACACCTGGCTGGAT
TTAAAGGTGAGGCAGACAAATGTCGTTGGACGTGGTATCCCAACCGTTCG
TTGGCGGAAAAGCCGCTGTGGGTTCGCCGAGTACATCGTAGCGCGCCGAG
CATATCTCGCTGACGCCTTGTGAGGCACACAGTTGTTAGACGTAACTGCG
CGCGTGCCGTGGACGTGGTATCCCAACCGTTCGTTGGCGGAAGAGCGGCT
GTAGGATTGCCGAGTACATCGTAGCGCACCGAGCATGATTCGCTTACGCC
TTGACCACGCTGGATGGCGCGACAAGATCTCCCTCTTTCCCCATGTTTGT
ACAGCAGAACATAGGATGATGTCGGTACATCATGAGTGTGATTAGTCTAA
TGGGTTGCCATTTTGTGTGCATCATCGTGAGACATGAACAGTTGCAGTAT
GCTACAACAATGCCGATGCCGTTGCATCGTGAAATGTGAACAGATAGTTA
CCAGTTGTTTAAATCCTCTTTGAACTTGAATGTCTCCAAAAAATAATCAC
TTCCGCGTGGTCTCAAGCCTGCTCCTGACGCGCATTGCTCTTCCCGACTA
CTTCTGTCGGAAAGGGTTATGCCAAGATAGCACCGTCCAAGCTGTTGCTT
TTGTCGCGCTGTCCAATTTAATTCAGTTCTCGTGTCCCGTGGCGTTATCG
TCTCCTTCCTCGTCGTTGTGCGCGCTCACGGTGTCTGCGATTTTTTGGCC
TTTTGTGGGTTGGCTTTCTCGTTGTCATCGTCGTCGATTTGCTGTTGTTG
CTTTTGTTGTTGCTGTTGTTGCTGCTGTTGTTGATTTCTCCGTCGTCGTG
CTGGTACCGGAGAGACTTGCACTGATGTTGGGTGTGATTTTCCTCCGGCC
CTACATCGATATTCGAGTAGGACGATGTAGCGTAGCAGGAGAGGCAAATC
ACCCCGATCGCATAGGATGATGAGGAGAGGCAACCGACCCCCAATGCCAG
GTGCAAGTTTATCCGGTGCCAGCATGACGATGGAGGAAGCAACAGCAACA
CGACGACTTGCTGCTGCTGTTGTTGTTGTTGTTGTTGATGATGTTGATGT
TGATGATGTCTCCGTCGTCATGCTGGCACCGGAGAGAATTGCACCTAGCG
TCGGGTATGATTTTCCTCTCTCCTCCTCGATATGTGTGGTAGTCCTCAGT
CTTACTCAAGGCGACTGCTGTAGCTTGGTAATAAAAGCGTTTCATTGAAA
CGCACGTCGTGTGTCGAGTGGTGTCACGCACGGCCCAATTCTCCTTGCTG
ATGTGTTTTTTTTTTGGGCACTCGTCGTCGTGTGTGCGTCTCTCAGGAGC
GCTGGAGAACTCTTGCAAGAAGGCGGCCGGGCTGTACCAGAAGTGCGCCA
ACCTCTGCATCAAGGACGGAGCGTTGGCGCGCGGCAGGCTGACGTTCGAG
CAGGGTCAGGTGAGGCCGAAGGGGTTGGCAACGTCAGACCAGCACGGGTG
GTGGCAGGAGTACGGTGCACGACGGGTGTTCCACGTACTTTGTCGTTTGG
GACAATTCCACTGCTGCTGCTGCTACTGCTGCTGCTGGGCTGTTGTTATC
TATTTGTAAAGGGCGTTGTTGTTTGTCAAGAATGGTCTTTGTGGGCGCGG
TATGTGCGCCCCGTCTGCCAAGATGCTGTGTGCAAGAGAACGGGGTGCCA
AAACATCGATTTTTAGTTCAGCACAGCGCGTCCATGCTTATTTAGGCGTG
TTGGTCCTATACCCCCTCATAATCTCGTAATCACTCATACCGTGTTACGA
GGTGCCGATGAGTCCATCAACAGCGCGACCTGTTCCGGACGATCCCCCAA
CCGTGCTGCATTCTGCGTCGCGCTCTTTGCTCACAACCGGCCCCGTCCCG
CCCTTCCCAGCCCCGCCGCGCATTTGCAAAGCGAAGTTACGGTAGGTTGC
ATAAGTTGTACCACACCCGAATTTCAAAGATGGATGGATATTTTTGGGGT
ACATTTGCTTTTACCCTGCAGCGAAAACAGCGATGGAGGCGATGGAAAAG
TCTCGTCCAGAGCTTTCCGAAAACGTGCCATTTGATTTTGGCATCCTTTT
CGCCGTGGAGCCTTCGAGCTTCGAAAATCGGTCCAGGTGGTGTGGAACCT
TGTGTCATCCACGGTACGTGTTTGCAACGGTATTGTAATGTCAAAGGCAG
AGAGAAAGTCTTCCTCCTTGTTAACCCGTTGCGTCACCCCCCCCCCCCCT
GGTTNNNNNNNNNNNNNGTGGTGTGGTATCTTGTGTCATCTACGGTACGT
GTTTGCAACGGTATTGTAATGTCTAAGGCAGAGAGAAAGTCTTCCTCCCT
GTTAACCCGTTGCGTTACCCCCTCCCCCCCAATGGTTCTCCGGTTTTTCA
GTACCAAGAGGCGTTCGTACACTACCTCATCGCCGCCGAGCAAGGAAGTA
AGGAAGGACAGGCCTCGTTGGCGTAGCTGCTGGATAGGAGCATGGCCGCC
GCCCCCGCGGGCACTTCCTGGCCCTCGTCGCTGGTGCGTCGGGCGTGGGA
AAGCCTTGTTGGCGACGGCGACGGCGACGGCGGCGGCGGTGGCGGTGCCG
ATAGCGGGCCAAGCGGTGGCGATGAGCGCGTCAAAGACGCAATGGCAAGC
GGTTGGCCTGACGAAGAACGAAGCGCCGGTGGTAGTGGGCCCGGTAGCGG
GAGTGGGATGAGGAGGAGGAGGAGGAGGAGCGGTGTTGGCGGCGTTGCCG
ACGCCGTCCGCCAGATGGGTGGGGACCCCGAAGCCATGGCGCGCGTAGGC
TCGCCGCTGAGCAGGGGGACTCAGAAGCGAGGTGAGTGTAGCGGTGTGCG
GGCAGCCTTTTACCTCGAGCGGTCGTATGCGCATGGTGTTGCCTTCATGT
TGTTTGGTTCCTCGCCAGAATATACCTTGAACGTTGAGCTTGACGTAGCT
TGCGTGCCGACAGCCCTTTTATTTATCTGCAAGGCAGACACGGACGGGAG
AGTTTGTGCCGAGCGTTGCGTGTACCTCCGTATATTTTTTATGTGTTGGA
GATTTGACACAGGACAACAAATCACACCCCTCATGTGGTACATCCATCGG
GAATATTTTTCTGGATGAACATGGGCGCAATGGGGTGACACAAGATACCA
CCAATTCCTTCGTACACAACATCTCGCCCAGTAGTATGCTTGTTTTGGGA
AGCTCAAAATGTCAATCAAAAGGGGGGCGTTATCTTGCGTAGTAGCATGG
CATGACGAGGCGCCAAGTATCACGTGAGAACACCAACACACCTTCGTCTC
CCCTTCTCTCTGATATATCAATCGCGCACGCACACGTTTTTTTTTTTTGG
CGGCTCGGCGAAAAGGTGCGACATAGCGGACCACCTGTATCGGCAGGCGA
AGGACATGGGGGCGTCGCGCCGGGCACCTGTTGGTTGTCCGCGTGGGCCC
GAAGTACCACCACCATGACGACCAGCAACAGCAAGTACATCAACAACGAC
GATGGCAGCAGAAGAAGCGCCAGTGACGACGAGAACAACCATCAGCAGAG
G
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Coding sequence (CDS) from alignment at Scaffold_246:595464..599264+

>EsuBft1057_2a-0001 ID=EsuBft1057_2a-0001|Name=EsuBft1057_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=579bp|location=Sequence derived from alignment at Scaffold_246:595464..599264+ (Ectocarpus subulatus male Bft15b)
ATGCCATCCTGGTCCTCGCAGAGCTACACCTGGCTGGATTTAAAGGATGA
TGTCGGAGCGCTGGAGAACTCTTGCAAGAAGGCGGCCGGGCTGTACCAGA
AGTGCGCCAACCTCTGCATCAAGGACGGAGCGTTGGCGCGCGGCAGGCTG
ACGTTCGAGCAGGGTCAGCTGCTGGATAGGAGCATGGCCGCCGCCCCCGC
GGGCACTTCCTGGCCCTCGTCGCTGGTGCGTCGGGCGTGGGAAAGCCTTG
TTGGCGACGGCGACGGCGACGGCGGCGGCGGTGGCGGTGCCGATAGCGGG
CCAAGCGGTGGCGATGAGCGCGTCAAAGACGCAATGGCAAGCGGTTGGCC
TGACGAAGAACGAAGCGCCGGTGGTAGTGGGCCCGGTAGCGGGAGTGGGA
TGAGGAGGAGGAGGAGGAGGAGCGGTGTTGGCGGCGTTGCCGACGCCGTC
CGCCAGATGGGTGGGGACCCCGAAGCCATGGCGCGCGTAGGCTCGCCGCT
GAGCAGGGGGACTCAGAAGCGAGGACAACAAATCACACCCCTCATGTGGT
ACATCCATCGGGAATATTTTTCTGGATGA
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