EsuBft873_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft873_3a-0001
Unique Name	EsuBft873_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_246	contig	Scaffold_246:519336..522587 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft873_3
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Note	-specific serine endopeptidase autotransporter os:neisseria gonorrhoeae gn:iga pe:1 sv:1 [Automatic annotation]
Nb exon	1
Length	2209
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft873_3a	EsuBft873_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_246 519336..522587 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft873_3a-0001	EsuBft873_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_246 520508..521209 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft873_3a-0001-exon	EsuBft873_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 519336..519443 +
EsuBft873_3a-0001-exon	agat-exon-21189	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 520487..522587 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft873_3a-0001-exon	agat-five_prime_utr-14578	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_246 519336..519443 +
EsuBft873_3a-0001-exon	agat-five_prime_utr-14579	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_246 520487..520507 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft873_3a-0001-cds	EsuBft873_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_246 520508..521209 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft873_3a-0001-exon	agat-three_prime_utr-22517	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_246 521210..522587 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_246:519336..522587+
coding sequence from alignment at Scaffold_246:519336..522587+

spliced messenger RNA

>EsuBft873_3a-0001 ID=EsuBft873_3a-0001|Name=EsuBft873_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2209bp|location=Sequence derived from alignment at Scaffold_246:519336..522587+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGTGGTCGTGGACAAGCGTGTCAACGACAGAGCCTTCATCTATCTTTAGG
AGCAAGCTACCGCCCACGGCATCGCTCCTTGAAACTTAGCGTCAGCTGGC
ATTACTCGAGGACACCATGCCCAGCGGCAATGTGGAACTCCTGGGCGACA
GTGTGGAAATCCTGGATTACGAACCCGAGGGCGAGGCTCCCACCGCAGAG
CAGTTTCCAGCGGCCGGTGCGGGAGACGAGCGCCCCCCCATGCCCATTGT
GTTCACCGTCGATAATTTGCTGGACAACATCGCCACAGCAGATCCGGCAA
AACTGGAGCGGGCCCACCGGACGTGTCTCTCTGGAGGATATTGTAGAAGC
GGCCCATCTGTCGTCCGATTCCCCCCTTTTCGTTCCTCCTTTCTCGCTCC
CGCCGGAAGACAAACTAATCCTCTTGCCCCACGACGAGTTTATGGCGTAC
CAAAGGTTGAACTACATGTGGTGCGACGGTCTTGCCGGGAAGATAGCAGA
GGCGGAGGCGCGAGAGCAGGCGGAGCGCGAGGACGCGGAGCGCTTGGCGG
AACGTGAGGCTGCTCTGGCTGCTGCGGCGAGGAAGCAGGAGGAGGAGCGT
GAGGCTGTTCGAGCTGCTGCGGCGAGGGAGCAGGAGGAGGAACGTGAGGC
TGCTCTGGCTGCTGCGGCGAGGAAGCAGGAGGAGGAGCGTGAGGCTGTTC
GGGCTGCTGTGGCGAGGGAGCAGGAGGAGGAACGTGAGGCTGCTCTGGCT
GCTGCGGCGAGGAAACGGGAGGAGGAACGTGAGGCTGCTCTGGCTGCTGC
GGCGAGGAAGCAGGAGGAGGAGCGTGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCCCCCCCCCCACGCAATCCCAAGTGCCCCTTGGTT
CCCATCGTACCGCCTCGCCGCACGAGAAGGAGCAGGAGGTGGCGGCTTCT
CCGACGAACGAGAAGGAGCGGGAGAGGACAGCGACTCCGGAGTTTTCGGT
GACGTTGGGTCTTCCGGCCGGTGCTGAAGACGGAGCATCGTTTGCGGCCG
CAACCACGGTGCNTGGAGCCCCGCCACCAGGACCCGCGAGCAGCCCCCCA
CCCCGTCGCCGTGGTACCGTCCCCCCCCCCACGCAATCCCAAGTGCCCCT
TGGTTCCCATCGTACCGCCTCGCCGCACGAGAAGGAGCAGGAGGTGGCGG
CTTCTCCGACGAACGAGAAGGAGCGGGAGAGGACAGCGACTCCGGAGTTT
TCGGTGACGTTGGGTCTTCCGGCCGGTGCTGAAGACGGAGCATCGTTTGC
GGCCGCAACCACGGTGCACGAGTTCCACGTTGGAGATACAGCGTTCCTGT
CCCGCCCGCTGGAGATGCCTGCAGAAGATGTAACGTTCTACGATGAGGAC
AAATTGGCAGCTCTTGTTGCATGGGCTGGCATCAAACAACTCGTCCGTGC
ACAATTTCCCCAACCGCACACCGTTGCTTTCGGGCACATTTACCATACCC
CATACATCGCGAAAATTTAGCCTTCTTCGCGGCAGTCCGTGTTCCAGCTT
TTGTTCGCTCTCCGTCGTACCATCTTTCATAAAGGTCCTCAAGGAACGTC
GGTGGTGACATATGATGGAGGACTCCACCTGCCTCTTGCTCGTGCTGCCT
CGAACAACGACCTCAAGCACGATCTCCAAGCCCCGCGGCAGGCCTCTTCC
CGCCCTGCGCATGGTTCTGGAGAGGACAAGGACTACAGTTGGTCGGCGGC
TCCTGTGTCCAAGAGCTGGAAGGACCGTTGGGGCGACCGGGATTCGACGG
CCAAGAGCGGGACGGACGACCACCGCCGCTCCACCCAGTCTTTGAGAGGG
CGCGGCGTCGGAGATAACAGGCGAGGGCGAGCCGTGGGGAACCAGCCTAC
TAGGTCTTCGCCGGCGAGTCGCCATCGCCGGAGCAGGAGTCGGAGCGCAG
AACGTCAACAGCGCACCAGTCCTTCGTCCAGGCGTGGGCGCAGCCGGAGC
GGAGACCGTCGTGAGAGAAACAAGCCTTCGTCTTGGCGTAGCCGCAGCCG
GAGCCAGAACCGGAGCGGGGGCAACAGCAGGGCGACCAGCACTGACAGCA
GTCGCGGCGGAAAAGGGGGACGGAGGTCAGGCCACGGTAACAGGCAAGTG
ATGTATGAT

protein sequence of EsuBft873_3a-0001

>EsuBft873_3 ID=EsuBft873_3|Name=EsuBft873_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=234bp
MWNSWATVWKSWITNPRARLPPQSSFQRPVRETSAPPCPLCSPSIICWTT
SPQQIRQNWSGPTGRVSLEDIVEAAHLSSDSPLFVPPFSLPPEDKLILLP
HDEFMAYQRLNYMWCDGLAGKIAEAEAREQAEREDAERLAEREAALAAAA
RKQEEEREAVRAAAAREQEEEREAALAAAARKQEEEREAVRAAVAREQEE
EREAALAAAARKREEEREAALAAAARKQEEERXX

mRNA from alignment at Scaffold_246:519336..522587+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft873_3a-0001 ID=EsuBft873_3a-0001|Name=EsuBft873_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3252bp|location=Sequence derived from alignment at Scaffold_246:519336..522587+ (Ectocarpus subulatus male Bft15b)
CGTGGTCGTGGACAAGCGTGTCAACGACAGAGCCTTCATCTATCTTTAGG
AGCAAGCTACCGCCCACGGCATCGCTCCTTGAAACTTAGCGTCAGCTGGC
ATTACTCGGTAAGCGGGTGCTGGACGCGGCTTCCACACTGCTGTGTGTTG
TTGCCACGTTTGTTTCACAACCACCGGGTTGCTTGTTGTTTGGTCTCACC
ACCCACGAGCATCTAGACTTTGCCTCTTCCTCGTCTGTAGAGATGCTGGC
TTGTGATGCTTTTGCAAAGCGCCCGCGGGACTGGGACCTTGCAAAGGATA
CGCGCCTCGGAGACCATCGCGATGTTTTGAGTGATTTTTTGTACGTTCGC
CGTCTCTCGAAAGCTATATTGTCTGCATCGGCGGTCCATATATTGATTTC
TGTGGCGGATACCCTCTGCATGGAGCGTCCTGACTTGCTGGCTTTGTGTG
GTGGGACCCGAGATGACAGCATGCTTCCTACGTCTGCTACCACCTCTAGT
CTACTGCATTCATGCCGGCGTACCGGCCGATGTCCGCGGATTTCCCTGTC
GTGCTCTCCGATTTGGCTCCGCTTACATCGACTTGGAACGCGTTGTGTGA
ACACAAATTGGGTGTCAGCCGCCCCACCAGCCTTCCCTCCATTTTTCGAT
ATCACATGGCCATTTTTTTCGGGGAATCGTTCACCCTCAAAGCATTTGAA
TTGGAAACCTTTCAACAGCGCAAACCCACAGCGGTCTTTGCTCGCACTCG
GCACCAGTTGCGGAGGAACGCCCGTGTTGCTCTGCGTGTCTTTTGGTCGG
AAAACCTCGTGTCTCCATGTAACACGGGCCCTCTTGTGCTAGCTTCTACT
GCTGTTTGTGCGTGGCATGGTGTGCTTTTGGACGCTTTTTCTGCTTGGTT
GGATCCGCTTCAACCTCGTGTGCACCAAGCTTTTATCACTGGGCGTATGC
TATCCTGTGGATATCTCCGCCTTTCGCATGGACCTCGGCTTGCTCTTCCC
GAAGTTGCACCCGACTTTACTGCTTCTGCTGCTCTTGGTGCTGCTGCCTC
AACTGCGGTTGGTTATGCTACATCTGCTGTTTCTGGCCCTGCTGCCCTTT
CCACAATCGATCGTAGCTACCCTCTCCCTGGCCCTGTTCTTGTTGACAAA
GAGGACACCATGCCCAGCGGCAATGTGGAACTCCTGGGCGACAGTGTGGA
AATCCTGGATTACGAACCCGAGGGCGAGGCTCCCACCGCAGAGCAGTTTC
CAGCGGCCGGTGCGGGAGACGAGCGCCCCCCCATGCCCATTGTGTTCACC
GTCGATAATTTGCTGGACAACATCGCCACAGCAGATCCGGCAAAACTGGA
GCGGGCCCACCGGACGTGTCTCTCTGGAGGATATTGTAGAAGCGGCCCAT
CTGTCGTCCGATTCCCCCCTTTTCGTTCCTCCTTTCTCGCTCCCGCCGGA
AGACAAACTAATCCTCTTGCCCCACGACGAGTTTATGGCGTACCAAAGGT
TGAACTACATGTGGTGCGACGGTCTTGCCGGGAAGATAGCAGAGGCGGAG
GCGCGAGAGCAGGCGGAGCGCGAGGACGCGGAGCGCTTGGCGGAACGTGA
GGCTGCTCTGGCTGCTGCGGCGAGGAAGCAGGAGGAGGAGCGTGAGGCTG
TTCGAGCTGCTGCGGCGAGGGAGCAGGAGGAGGAACGTGAGGCTGCTCTG
GCTGCTGCGGCGAGGAAGCAGGAGGAGGAGCGTGAGGCTGTTCGGGCTGC
TGTGGCGAGGGAGCAGGAGGAGGAACGTGAGGCTGCTCTGGCTGCTGCGG
CGAGGAAACGGGAGGAGGAACGTGAGGCTGCTCTGGCTGCTGCGGCGAGG
AAGCAGGAGGAGGAGCGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCCCCCCCCCCACGCAATCCCAAGTGCCCCTTGGTTCCCATCG
TACCGCCTCGCCGCACGAGAAGGAGCAGGAGGTGGCGGCTTCTCCGACGA
ACGAGAAGGAGCGGGAGAGGACAGCGACTCCGGAGTTTTCGGTGACGTTG
GGTCTTCCGGCCGGTGCTGAAGACGGAGCATCGTTTGCGGCCGCAACCAC
GGTGCNTGGAGCCCCGCCACCAGGACCCGCGAGCAGCCCCCCACCCCGTC
GCCGTGGTACCGTCCCCCCCCCCACGCAATCCCAAGTGCCCCTTGGTTCC
CATCGTACCGCCTCGCCGCACGAGAAGGAGCAGGAGGTGGCGGCTTCTCC
GACGAACGAGAAGGAGCGGGAGAGGACAGCGACTCCGGAGTTTTCGGTGA
CGTTGGGTCTTCCGGCCGGTGCTGAAGACGGAGCATCGTTTGCGGCCGCA
ACCACGGTGCACGAGTTCCACGTTGGAGATACAGCGTTCCTGTCCCGCCC
GCTGGAGATGCCTGCAGAAGATGTAACGTTCTACGATGAGGACAAATTGG
CAGCTCTTGTTGCATGGGCTGGCATCAAACAACTCGTCCGTGCACAATTT
CCCCAACCGCACACCGTTGCTTTCGGGCACATTTACCATACCCCATACAT
CGCGAAAATTTAGCCTTCTTCGCGGCAGTCCGTGTTCCAGCTTTTGTTCG
CTCTCCGTCGTACCATCTTTCATAAAGGTCCTCAAGGAACGTCGGTGGTG
ACATATGATGGAGGACTCCACCTGCCTCTTGCTCGTGCTGCCTCGAACAA
CGACCTCAAGCACGATCTCCAAGCCCCGCGGCAGGCCTCTTCCCGCCCTG
CGCATGGTTCTGGAGAGGACAAGGACTACAGTTGGTCGGCGGCTCCTGTG
TCCAAGAGCTGGAAGGACCGTTGGGGCGACCGGGATTCGACGGCCAAGAG
CGGGACGGACGACCACCGCCGCTCCACCCAGTCTTTGAGAGGGCGCGGCG
TCGGAGATAACAGGCGAGGGCGAGCCGTGGGGAACCAGCCTACTAGGTCT
TCGCCGGCGAGTCGCCATCGCCGGAGCAGGAGTCGGAGCGCAGAACGTCA
ACAGCGCACCAGTCCTTCGTCCAGGCGTGGGCGCAGCCGGAGCGGAGACC
GTCGTGAGAGAAACAAGCCTTCGTCTTGGCGTAGCCGCAGCCGGAGCCAG
AACCGGAGCGGGGGCAACAGCAGGGCGACCAGCACTGACAGCAGTCGCGG
CGGAAAAGGGGGACGGAGGTCAGGCCACGGTAACAGGCAAGTGATGTATG
AT

Coding sequence (CDS) from alignment at Scaffold_246:519336..522587+

>EsuBft873_3a-0001 ID=EsuBft873_3a-0001|Name=EsuBft873_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=702bp|location=Sequence derived from alignment at Scaffold_246:519336..522587+ (Ectocarpus subulatus male Bft15b)
ATGTGGAACTCCTGGGCGACAGTGTGGAAATCCTGGATTACGAACCCGAG
GGCGAGGCTCCCACCGCAGAGCAGTTTCCAGCGGCCGGTGCGGGAGACGA
GCGCCCCCCCATGCCCATTGTGTTCACCGTCGATAATTTGCTGGACAACA
TCGCCACAGCAGATCCGGCAAAACTGGAGCGGGCCCACCGGACGTGTCTC
TCTGGAGGATATTGTAGAAGCGGCCCATCTGTCGTCCGATTCCCCCCTTT
TCGTTCCTCCTTTCTCGCTCCCGCCGGAAGACAAACTAATCCTCTTGCCC
CACGACGAGTTTATGGCGTACCAAAGGTTGAACTACATGTGGTGCGACGG
TCTTGCCGGGAAGATAGCAGAGGCGGAGGCGCGAGAGCAGGCGGAGCGCG
AGGACGCGGAGCGCTTGGCGGAACGTGAGGCTGCTCTGGCTGCTGCGGCG
AGGAAGCAGGAGGAGGAGCGTGAGGCTGTTCGAGCTGCTGCGGCGAGGGA
GCAGGAGGAGGAACGTGAGGCTGCTCTGGCTGCTGCGGCGAGGAAGCAGG
AGGAGGAGCGTGAGGCTGTTCGGGCTGCTGTGGCGAGGGAGCAGGAGGAG
GAACGTGAGGCTGCTCTGGCTGCTGCGGCGAGGAAACGGGAGGAGGAACG
TGAGGCTGCTCTGGCTGCTGCGGCGAGGAAGCAGGAGGAGGAGCGTGNNN
NN