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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft2328_3 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 5 |
| Length | 117 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2328_3a-0001 ID=EsuBft2328_3a-0001|Name=EsuBft2328_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1176bp|location=Sequence derived from alignment at Scaffold_246:183898..186876- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCCACCTCCAGCAATCCTCGCACTCCACTCAGGGAGCCCAAGAGGAA
GAGGGACACCGGCCTGGAGATCTCCGGACTGGGCCCCGACGATGATGATT
TTTGCACTCCCCCAGGGGTGACGCGAAGAGTGGCAAACACAACACCTCTC
ACCCCACGGTCGCCGAACGCAGCGACGTCATCATGTGGACCGAAGGGGAA
GAAGCCCAAGAAATCTCGCCATGAATACAAGCCAGTGCCCTCTCAGTACG
AAATGATGACGACTGCGCGCCTCTTCGGTGATGGCCACATCGCCAGGAGT
AACTTCTCCTACAACCATCCTCAATTCGCGAAGGAGGCCGATACGTTCAA
CGGTGTGACGATCGCAGGAAAGCAAGTATGGCAACGACAACCGAGCGGGC
CCTCAACTCTCCACAACAAAGTCACTATCATCGACCACTTCTCCTCGCTG
GCCCCGTTCTTGGGTCCGCTGGAGAAGCTGTGTAAGCCGAGAGACTCCAC
CGACCGCTTGTTCCTAAAGCAACGGGCCCAGCAGTACATCACTTCCGGCC
GCCGACACCGCGACGGCAAAAACGGTCTCTGGCGGATGTGCGTCACGGTT
CACAACCCGGGCGCGCCGCCAGGCTTCAAGCGCCTGGAGCTCAAAGCCGA
TGGCACCCCAGACATGGAGTGTATCGACTGTCCAGCAGGGTCGTACCATA
CAATGGACGAGGTCGGCACCGGCACCGCGTCCCACGCACACCATCAGGAA
ATCATCGACAAGAACCTTCTTCGGGAGCACGGAGCGCCCACCACGTTCGT
GCTCGACTTCGACCCCATCGACCCCAACACGTTCATCGACGACGTCGCAC
GGATCGCAGAGGGTACTGTCGACAAGGTCAAGGCCGCCGTAGGCGTGTTG
GAAATCATCGACAAGAACCTTCTTCGGGAGCACGGAGCGCCCACCACGTT
CGTGCTCGACTTCGACCCCATCGACCCCAACACGTTCATCGACGACGTCG
CACGGATCGCAGAGGGTACTGTCGACAAGGTCAAGGCCGCCGTAGGCGTG
TTGGTATACGTGCGCCCTCGGACAGAAGAGCAGATCGGCAAGTCCTGTGC
TTCGGAGAAAATGAGAGCCTACAAGCAACGGGAAGGGGACGACCCGGACG
GCTGTAAGAAGAGCAGGCTAGGGTAG back to topprotein sequence of EsuBft2328_3a-0001 >EsuBft2328_3 ID=EsuBft2328_3|Name=EsuBft2328_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=391bp
MATSSNPRTPLREPKRKRDTGLEISGLGPDDDDFCTPPGVTRRVANTTPL
TPRSPNAATSSCGPKGKKPKKSRHEYKPVPSQYEMMTTARLFGDGHIARS
NFSYNHPQFAKEADTFNGVTIAGKQVWQRQPSGPSTLHNKVTIIDHFSSL
APFLGPLEKLCKPRDSTDRLFLKQRAQQYITSGRRHRDGKNGLWRMCVTV
HNPGAPPGFKRLELKADGTPDMECIDCPAGSYHTMDEVGTGTASHAHHQE
IIDKNLLREHGAPTTFVLDFDPIDPNTFIDDVARIAEGTVDKVKAAVGVL
EIIDKNLLREHGAPTTFVLDFDPIDPNTFIDDVARIAEGTVDKVKAAVGV
LVYVRPRTEEQIGKSCASEKMRAYKQREGDDPDGCKKSRLG back to topmRNA from alignment at Scaffold_246:183898..186876- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2328_3a-0001 ID=EsuBft2328_3a-0001|Name=EsuBft2328_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2979bp|location=Sequence derived from alignment at Scaffold_246:183898..186876- (Ectocarpus subulatus male Bft15b)
ATGGCCACCTCCAGCAATCCTCGCACTCCACTCAGGGAGCCCAAGAGGAA
GAGGGACACCGGCCTGGAGATCTCCGGACTGGGCCCCGACGATGATGTAA
GGCCATCAGAGTGGTGTGATAGACATGCTTTCCTTCAGAGTTCAGGTCGT
CCATTGTGAACGCGAGCCTAGTCACACACACCCATTCATAATCAAAATCA
CACGATGATACACCCTCTCCCCACCCATGCATCCGTCCGCGATCCCACAG
GATTTTTGCACTCCCCCAGGGGTGACGCGAAGAGTGGCAAACACAACACC
TCTCACCCCACGGTCGCCGAACGCAGCGACGTCATCATGTGGACCGAAGG
TGAGAGACGATCAGTTCCCACCCGATTTACGATTTCTGACTGCGATGCCT
CCCTAGCTAGCTTCATTGACGCCGTCTCCTCTATCAACATGGAGTGCGCC
GACGCTGTTTCTTTCCTACCACAAGTCCGCCTTCCGTCATGGGTTACATA
CAGACATGATTGTGCTTTCAACATGGTTCGGACACACACGAAAATAGAAT
AGAAACGTTCTCGTGCAAGCAGATAGTAGGTGGGCTAAAAGTTGCGCGTT
TAATTTGCAGTCTGAGTCCAGTCGAACAGAGTGACAATAAATGCGGGTGC
AGGATATGGCTCTCCCATGTTGGTGAATGTCGACACTCATCCACCCCTTT
GGAACTGCGACCATTTCGACAACCCGTCGCACCGCGCCATTCATCCGGGA
AATCAGGGGAGAAGCGCCGTCTGAGCCTCGGTTCCGAACAGAGGGAGGAG
GAGGAGGAAGAGGAAGAGGATGATGCCTGATCCCCTTGTATCCACCTTAC
CCCTTGGGGTTGCAACTTGGCATTTACCCGGACCGATATTCAGGGTTGGT
GGGGGGTGCCGAACGGGACATCGTAAGTAGACGAATTCGCACGCATAATT
CCGCTCAAACTATCCAACACGCCTCCCGAAGGGATTTCCATTTTTGATCG
CTATCGCCCCCCCCCCTCACACTCTCCACACATTCCACTTAGCCGTGAAT
CTGACACCAAAAGAATGAACGCCGTTATTTTTGTGACTCGAAAGGGAAAT
GTATGCCATTAAACTTACGTAGTGTGTCTCGATGAACACATAAAAGTGTA
AGTTGGGAACACCGAGAGGAACAGATGCGGAACTGATTATCACGGCCTCT
ACACACGACGTTGTCATACTCGTCGCGTTCCCGCCCGTCCTTGCAGACTG
CCCGAGAGTCAGCGAGACCCCTTCACATCGTCGGTCCTACCCGGGCGTGA
CAGCTGCACTCCATGTCGGTAAGATTTGTATCCTCGTCGTGGTTTAACCC
GACGAGTTGAACATCGTCGTCGCTCTGTCCCACGTGTTTTACGCTGTCCT
TTTCCCTGCCACTCAACAGCCCCTCAAGTCGATGNTCGCCCCCCCCCCTC
ACACTCTCCACACATTCCACTTAGCCGTGAATCTGACACCAAAAGAATGA
ACGCCGTTATTTTTGTGACTCGAAAGGGAAATGTATGCCATTAAACTTAC
GTAGTGTGTCTCGATGAACACATAAAAGTGTAAGTTGGGAACACCGAGAG
GAACAGATGCGGAACTGATTATCACGGCCTCTACACACGACGTTGTCATA
CTCGTCGCGTTCCCGCCCGTCCTTGCAGACTGCCCGAGAGTCAGCGAGAC
CCCTTCACATCGTCGGTCCTACCCGGGCGTGACAGCTGCACTCCATGTCG
GTAAGATTTGTATCCTCGTCGTGGTTTAACCCGACGAGTTGAACATCGTC
GTCGCTCTGTCCCACGTGTTTTACGCTGTCCTTTTCCCTGCCACTCAACA
GCCCCTCAAGTCGATGGGGGGAAAAGAGGAAGACGCCCCCCGCGTCGAAG
GGGAAGAAGCCCAAGAAATCTCGCCATGAATACAAGCCAGTGCCCTCTCA
GTACGAAATGATGACGACTGCGCGCCTCTTCGGTGATGGCCACATCGCCA
GGAGTAACTTCTCCTACAACCATCCTCAATTCGCGAAGGAGGCCGATACG
TTCAACGGTGTGACGATCGCAGGAAAGCAAGTATGGCAACGACAACCGAG
CGGGCCCTCAACTCTCCACAACAAAGTCACTATCATCGACCACTTCTCCT
CGCTGGCCCCGTTCTTGGGTCCGCTGGAGAAGCTGTGTAAGCCGAGAGAC
TCCACCGACCGCTTGTTCCTAAAGCAACGGGCCCAGCAGTACATCACTTC
CGGCCGCCGACACCGCGACGGCAAAAACGGTCTCTGGCGGATGTGCGTCA
CGGTTCACAACCCGGGCGCGCCGCCAGGCTTCAAGCGCCTGGAGGTTGGC
GTGGCCGACGCCAGGGTTGCGAAGGGTGGCGGTGCCATCAACCCGTGGTA
GCTCAAAGCCGATGGCACCCCAGACATGGAGTGTATCGACTGTCCAGCAG
GGTCGTACCATACAATGGACGAGGTCGGCACCGGCACCGCGTCCCACGCA
CACCATCAGGAAATCATCGACAAGAACCTTCTTCGGGAGCACGGAGCGCC
CACCACGTTCGTGCTCGACTTCGACCCCATCGACCCCAACACGTTCATCG
ACGACGTCGCACGGATCGCAGAGGGTACTGTCGACAAGGTCAAGGCCGCC
GTAGGCGTGTTGGTNAGGTCGGCACCGGCACCGCGTCCCACGCACACCAT
CAGGAAATCATCGACAAGAACCTTCTTCGGGAGCACGGAGCGCCCACCAC
GTTCGTGCTCGACTTCGACCCCATCGACCCCAACACGTTCATCGACGACG
TCGCACGGATCGCAGAGGGTACTGTCGACAAGGTCAAGGCCGCCGTAGGC
GTGTTGGTATACGTGCGCCCTCGGACAGAAGAGCAGATCGGCAAGTCCTG
TGCTTCGGAGAAAATGAGAGCCTACAAGCAACGGGAAGGGGACGACCCGG
ACGGCTGTAAGAAGAGCAGGCTAGGGTAG back to topCoding sequence (CDS) from alignment at Scaffold_246:183898..186876- >EsuBft2328_3a-0001 ID=EsuBft2328_3a-0001|Name=EsuBft2328_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1176bp|location=Sequence derived from alignment at Scaffold_246:183898..186876- (Ectocarpus subulatus male Bft15b)
ATGGCCACCTCCAGCAATCCTCGCACTCCACTCAGGGAGCCCAAGAGGAA
GAGGGACACCGGCCTGGAGATCTCCGGACTGGGCCCCGACGATGATGATT
TTTGCACTCCCCCAGGGGTGACGCGAAGAGTGGCAAACACAACACCTCTC
ACCCCACGGTCGCCGAACGCAGCGACGTCATCATGTGGACCGAAGGGGAA
GAAGCCCAAGAAATCTCGCCATGAATACAAGCCAGTGCCCTCTCAGTACG
AAATGATGACGACTGCGCGCCTCTTCGGTGATGGCCACATCGCCAGGAGT
AACTTCTCCTACAACCATCCTCAATTCGCGAAGGAGGCCGATACGTTCAA
CGGTGTGACGATCGCAGGAAAGCAAGTATGGCAACGACAACCGAGCGGGC
CCTCAACTCTCCACAACAAAGTCACTATCATCGACCACTTCTCCTCGCTG
GCCCCGTTCTTGGGTCCGCTGGAGAAGCTGTGTAAGCCGAGAGACTCCAC
CGACCGCTTGTTCCTAAAGCAACGGGCCCAGCAGTACATCACTTCCGGCC
GCCGACACCGCGACGGCAAAAACGGTCTCTGGCGGATGTGCGTCACGGTT
CACAACCCGGGCGCGCCGCCAGGCTTCAAGCGCCTGGAGCTCAAAGCCGA
TGGCACCCCAGACATGGAGTGTATCGACTGTCCAGCAGGGTCGTACCATA
CAATGGACGAGGTCGGCACCGGCACCGCGTCCCACGCACACCATCAGGAA
ATCATCGACAAGAACCTTCTTCGGGAGCACGGAGCGCCCACCACGTTCGT
GCTCGACTTCGACCCCATCGACCCCAACACGTTCATCGACGACGTCGCAC
GGATCGCAGAGGGTACTGTCGACAAGGTCAAGGCCGCCGTAGGCGTGTTG
GAAATCATCGACAAGAACCTTCTTCGGGAGCACGGAGCGCCCACCACGTT
CGTGCTCGACTTCGACCCCATCGACCCCAACACGTTCATCGACGACGTCG
CACGGATCGCAGAGGGTACTGTCGACAAGGTCAAGGCCGCCGTAGGCGTG
TTGGTATACGTGCGCCCTCGGACAGAAGAGCAGATCGGCAAGTCCTGTGC
TTCGGAGAAAATGAGAGCCTACAAGCAACGGGAAGGGGACGACCCGGACG
GCTGTAAGAAGAGCAGGCTAGGGTAG back to top
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