EsuBft1418_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1418_12a-0001
Unique NameEsuBft1418_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:1230835..1232485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7425.NV19274-PA
ProteomeIdEsuBft1418_12
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl33208|Metazoa
Length1285
Hectar predicted targeting categoryother localisation
Evalue8.37e-52
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_12aEsuBft1418_12aEctocarpus subulatus male Bft15bgeneScaffold_242 1230835..1232485 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_12a-0001-exonEsuBft1418_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 1230835..1231648 -
EsuBft1418_12a-0001-exonagat-exon-57483Ectocarpus subulatus male Bft15bexonScaffold_242 1231878..1232142 -
EsuBft1418_12a-0001-exonagat-exon-57484Ectocarpus subulatus male Bft15bexonScaffold_242 1232280..1232485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_12a-0001-cdsEsuBft1418_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 1230835..1231648 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_12a-0001-exonagat-five_prime_utr-2448Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 1232458..1232485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_12a-0001EsuBft1418_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 1230835..1232457 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1418_12a-0001 ID=EsuBft1418_12a-0001|Name=EsuBft1418_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1285bp|location=Sequence derived from alignment at Scaffold_242:1230835..1232485- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGGGGGGAGACCGCAGATATTCGCAACGATGTTCGCCACCCGCGAGGATG
TGGACGCCGCTCTTCGCGCCGAGCGCCCGCCCGACAAGATGCCAGACCTT
CCTCACTGCCTCGCCAGCGACCTCCGCGTGCCGAAAACGTTCAAGGAGGC
CATGCGGTACCAACATTCAGAATTGTGGAATGATGCAGTCGATCGAGAGT
TTTTCGACGGCTTTGATTGTTTTGGAGAATTGTTTGCACCCACCGTTTCA
GTGTCTAGTGTGCGCTTGTTAGCAGCATTAGCAAGTGAGCAGAATCTTGA
CTTGTGCCATTTCGATATTCAGCAGGCTTTTGTGCAGTCTGAGCTTGGTG
AGGATATTCTCATGCGCTTACCGCAGGGGTGTGGTAGGTTGTCTGGCCTG
ATCGTGAAGCTGTGCAAGAGTCTGTATGGTTTGAAGCAGGCGTCACGACA
TTGGCGTGCGCACCTGACGAGAGAGCGGGCTGTTGAGGATTCGCAGCAGA
GGTTTGCCGAAGAGTTGGCTGCAGAGTACGGCGTTGAGTGGGGGAGGAGC
GTGCCCTTGCCTGTGAGCGTGAAGCTCACCGACTTTGACGAGAACGAAGC
GTGCGCTGATGTCCCTTTTCGCGAGTTGGTAGGATCCCTGATGTGGATGG
CCACTCAAACAAGGCCGGACATCGCGAACGCAGTACGAGCAGTAGCGCGG
TATTGTGCATCTCCCAAAATGGTGCACTGGAAGGCAACACTCGGTGTTTT
AGGGTACGTATGGACGACGAGTTGGATGGGGATTACATTTGAGAGGGGAG
TGGTGACTAGGATGAGAATGCAGGTGTTTGTGAATGCCGACTATGCAAGC
AAGGCGACAGACCGTAGATCGGTGTCAGGAGGGCTAGTGATGTGTGGGGG
AGGGTGTGTGACTTGGTTTTCGAGGACGCAGAAGTGCGTTACGCTTTCCA
CCACGGAAGCAGAGTATATGGCAATTGCCGATGTCTTGAAGGAAGTGTTG
TTCCTGAGGCAGGTTTGGCGTTGTACGTTGCCAGATGCAGGTATGCCGTG
CATCCCGGTGTTCGAGGATACTCATGGCGCGATTCAGATTGCACACAATC
CGATCACGAACTCCAACTCGAAGCACATCGATGTACGGCATCACTTAATC
AGGGAGCTGGTAGAGAGGAAGGAGATTTCATTTACTCATGTGCCGACGCA
ATTTCAGCATGCAGATTTCTTGGCGAAGGCTATTAGCAAGGATTCTTTTG
CGTTGCACCGTGACTTTGTGATGAACTTGCAGTGA
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protein sequence of EsuBft1418_12a-0001

>EsuBft1418_12 ID=EsuBft1418_12|Name=EsuBft1418_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=418bp
MFATREDVDAALRAERPPDKMPDLPHCLASDLRVPKTFKEAMRYQHSELW
NDAVDREFFDGFDCFGELFAPTVSVSSVRLLAALASEQNLDLCHFDIQQA
FVQSELGEDILMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWRAHLTRER
AVEDSQQRFAEELAAEYGVEWGRSVPLPVSVKLTDFDENEACADVPFREL
VGSLMWMATQTRPDIANAVRAVARYCASPKMVHWKATLGVLGYVWTTSWM
GITFERGVVTRMRMQVFVNADYASKATDRRSVSGGLVMCGGGCVTWFSRT
QKCVTLSTTEAEYMAIADVLKEVLFLRQVWRCTLPDAGMPCIPVFEDTHG
AIQIAHNPITNSNSKHIDVRHHLIRELVERKEISFTHVPTQFQHADFLAK
AISKDSFALHRDFVMNLQ
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mRNA from alignment at Scaffold_242:1230835..1232485-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1418_12a-0001 ID=EsuBft1418_12a-0001|Name=EsuBft1418_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1651bp|location=Sequence derived from alignment at Scaffold_242:1230835..1232485- (Ectocarpus subulatus male Bft15b)
GGGGGGGAGACCGCAGATATTCGCAACGATGTTCGCCACCCGCGAGGATG
TGGACGCCGCTCTTCGCGCCGAGCGCCCGCCCGACAAGATGCCAGACCTT
CCTCACTGCCTCGCCAGCGACCTCCGCGTGCCGAAAACGTTCAAGGAGGC
CATGCGGTACCAACATTCAGAATTGTGGAATGATGCAGTCGATCGAGAGT
TTTTCGGTTTGCTGGATGCAGGAACTTTTCACAGGAACTTTTAGTCCGGT
GTAGCAACCAGTAGAGAACGCCATCAATGCTAAGTGGGTCTTTAATTGTA
AGGCAGACGAGTACGGATGGCCGACGAAATTCAAGGCATGCAGACGGCTT
TGATTGTTTTGGAGAATTGTTTGCACCCACCGTTTCAGTGTCTAGTGTGC
GCTTGTTAGCAGCATTAGCAAGTGAGCAGAATCTTGACTTGTGCCATTTC
GATATTCAGCAGGCTTTTGTGCAGTCTGAGCTTGGTGAGGATATTCTCAT
GCGCTTACCGCAGGGGTGTGGTAGGTTGTCTGGCCTGATCGTGAAGCTGT
GCAAGAGTCTGTATGGTTTGAAGCAGGCGTCACGACATTGGCGTGCGCAC
CTGACGAGGTGTTTGTTGCTTTTAGGTTTTTGCAGTGTTTGGCAGATGCA
TGCGTTTTTCGATTGATGGAGGAGGGACGTGTGATCATGATCATCGTGGT
TCACGTGGATGACAATTTTGCCGTAGGGCAGAAGGAGAGGTGTGACAAGT
TTGGCAGGGATCTCAACGCGATGGTCCCCGTGAAGAACCTGGGAGAGTTG
AGGTGGTACTCCGCGTGCTTTTACAAGAGAGACGTAGAGAGCGGGCTGTT
GAGGATTCGCAGCAGAGGTTTGCCGAAGAGTTGGCTGCAGAGTACGGCGT
TGAGTGGGGGAGGAGCGTGCCCTTGCCTGTGAGCGTGAAGCTCACCGACT
TTGACGAGAACGAAGCGTGCGCTGATGTCCCTTTTCGCGAGTTGGTAGGA
TCCCTGATGTGGATGGCCACTCAAACAAGGCCGGACATCGCGAACGCAGT
ACGAGCAGTAGCGCGGTATTGTGCATCTCCCAAAATGGTGCACTGGAAGG
CAACACTCGGTGTTTTAGGGTACGTATGGACGACGAGTTGGATGGGGATT
ACATTTGAGAGGGGAGTGGTGACTAGGATGAGAATGCAGGTGTTTGTGAA
TGCCGACTATGCAAGCAAGGCGACAGACCGTAGATCGGTGTCAGGAGGGC
TAGTGATGTGTGGGGGAGGGTGTGTGACTTGGTTTTCGAGGACGCAGAAG
TGCGTTACGCTTTCCACCACGGAAGCAGAGTATATGGCAATTGCCGATGT
CTTGAAGGAAGTGTTGTTCCTGAGGCAGGTTTGGCGTTGTACGTTGCCAG
ATGCAGGTATGCCGTGCATCCCGGTGTTCGAGGATACTCATGGCGCGATT
CAGATTGCACACAATCCGATCACGAACTCCAACTCGAAGCACATCGATGT
ACGGCATCACTTAATCAGGGAGCTGGTAGAGAGGAAGGAGATTTCATTTA
CTCATGTGCCGACGCAATTTCAGCATGCAGATTTCTTGGCGAAGGCTATT
AGCAAGGATTCTTTTGCGTTGCACCGTGACTTTGTGATGAACTTGCAGTG
A
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Coding sequence (CDS) from alignment at Scaffold_242:1230835..1232485-

>EsuBft1418_12a-0001 ID=EsuBft1418_12a-0001|Name=EsuBft1418_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1257bp|location=Sequence derived from alignment at Scaffold_242:1230835..1232485- (Ectocarpus subulatus male Bft15b)
ATGTTCGCCACCCGCGAGGATGTGGACGCCGCTCTTCGCGCCGAGCGCCC
GCCCGACAAGATGCCAGACCTTCCTCACTGCCTCGCCAGCGACCTCCGCG
TGCCGAAAACGTTCAAGGAGGCCATGCGGTACCAACATTCAGAATTGTGG
AATGATGCAGTCGATCGAGAGTTTTTCGACGGCTTTGATTGTTTTGGAGA
ATTGTTTGCACCCACCGTTTCAGTGTCTAGTGTGCGCTTGTTAGCAGCAT
TAGCAAGTGAGCAGAATCTTGACTTGTGCCATTTCGATATTCAGCAGGCT
TTTGTGCAGTCTGAGCTTGGTGAGGATATTCTCATGCGCTTACCGCAGGG
GTGTGGTAGGTTGTCTGGCCTGATCGTGAAGCTGTGCAAGAGTCTGTATG
GTTTGAAGCAGGCGTCACGACATTGGCGTGCGCACCTGACGAGAGAGCGG
GCTGTTGAGGATTCGCAGCAGAGGTTTGCCGAAGAGTTGGCTGCAGAGTA
CGGCGTTGAGTGGGGGAGGAGCGTGCCCTTGCCTGTGAGCGTGAAGCTCA
CCGACTTTGACGAGAACGAAGCGTGCGCTGATGTCCCTTTTCGCGAGTTG
GTAGGATCCCTGATGTGGATGGCCACTCAAACAAGGCCGGACATCGCGAA
CGCAGTACGAGCAGTAGCGCGGTATTGTGCATCTCCCAAAATGGTGCACT
GGAAGGCAACACTCGGTGTTTTAGGGTACGTATGGACGACGAGTTGGATG
GGGATTACATTTGAGAGGGGAGTGGTGACTAGGATGAGAATGCAGGTGTT
TGTGAATGCCGACTATGCAAGCAAGGCGACAGACCGTAGATCGGTGTCAG
GAGGGCTAGTGATGTGTGGGGGAGGGTGTGTGACTTGGTTTTCGAGGACG
CAGAAGTGCGTTACGCTTTCCACCACGGAAGCAGAGTATATGGCAATTGC
CGATGTCTTGAAGGAAGTGTTGTTCCTGAGGCAGGTTTGGCGTTGTACGT
TGCCAGATGCAGGTATGCCGTGCATCCCGGTGTTCGAGGATACTCATGGC
GCGATTCAGATTGCACACAATCCGATCACGAACTCCAACTCGAAGCACAT
CGATGTACGGCATCACTTAATCAGGGAGCTGGTAGAGAGGAAGGAGATTT
CATTTACTCATGTGCCGACGCAATTTCAGCATGCAGATTTCTTGGCGAAG
GCTATTAGCAAGGATTCTTTTGCGTTGCACCGTGACTTTGTGATGAACTT
GCAGTGA
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