EsuBft2792_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2792_3a-0001
Unique NameEsuBft2792_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:934752..935647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2792_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length84
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2792_3aEsuBft2792_3aEctocarpus subulatus male Bft15bgeneScaffold_242 934752..935647 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2792_3a-0001-exonagat-exon-31358Ectocarpus subulatus male Bft15bexonScaffold_242 934752..934818 +
EsuBft2792_3a-0001-exonEsuBft2792_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 934872..935647 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2792_3a-0001-exonagat-five_prime_utr-7132Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 934752..934771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2792_3a-0001-cdsEsuBft2792_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 934772..934818 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2792_3a-0001-exonagat-three_prime_utr-11187Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 934957..935647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2792_3a-0001EsuBft2792_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 934772..934956 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2792_3a-0001 ID=EsuBft2792_3a-0001|Name=EsuBft2792_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=843bp|location=Sequence derived from alignment at Scaffold_242:934752..935647+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGAGCTGTGCGTGCATCAAAATGCCAGCACGAACAAGGGTTACTACGACG
GATCTCTTAAGTCAAGTTGGATGCCAATACCGTGAAGGAAGAGTACGAGC
TCCTAGTCCGCACAAGAAAGTACAGCTGTGCTATGTCGGAGGACATCGCT
AAAAACAGAAAGTATTTGTGCAGAAGCACTATACCCACCACGTTAACGCA
GAATTTGTCGCCGAGTTCACCAGGAAAAAGAATGCTATCTACAATCTGAC
GCTCATGAGCAATTTCCTGGGAGAAGTGGTGCGCAAAATACACTCGAGTA
TGACAGATTCTTTAGATTTGGTGAATCCTTATGTTCAACTAATCCCCGGT
TTTGAAAAAGCTCTCCGATTGATAGGGTTTGAGTCTGTCGGTTCCTCATC
CATCAAGATTGACATGGAGAAGATTTCTAATGAGGCGAGGAAAAGTATGG
AGGGCACTGTCGCCCTTTCTACTACACTGAAGCTGGATAGAAAGCCTCGG
GGCAACACGTTGTTGTCACAATTCAACTTCTATCTCGAAAGAGTTATCGG
ATACCACCTACAGTATCATAGGGTCCGCCGTGAAGGACACTCTGCGGCGG
CCTACTCTCTCGTGTCTACTATACCGCCTGAGTATCTGGACAACATGCAG
TACTCCAACGAATGGTTTGAAGCACATTGCCCAAGTTTTGATTTGCATAT
GAACTACCCGAGAGGCACCGAGCTTGCGTATATGCGAACATTGATGGCGC
CTTCAACTACACGTGTGTCATCGGATCAGCTTGCGGAGGTGGCTTGTGTG
ATTGTGCTTTACATCAAGCATCACTCCGCGTCCATGCGGTGGG
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protein sequence of EsuBft2792_3a-0001

>EsuBft2792_3 ID=EsuBft2792_3|Name=EsuBft2792_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=43bp
MPARTRVTTTDLLSQVGCQYREGRVRAPSPHKKVQLCYVGGHR
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mRNA from alignment at Scaffold_242:934752..935647+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2792_3a-0001 ID=EsuBft2792_3a-0001|Name=EsuBft2792_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=896bp|location=Sequence derived from alignment at Scaffold_242:934752..935647+ (Ectocarpus subulatus male Bft15b)
CGAGCTGTGCGTGCATCAAAATGCCAGCACGAACAAGGGTTACTACGACG
GATCTCTTAAGTCAAGTGTGGCATCTGCCAGCACGAACAAGGGTTACTAC
GACGGATCTCTTAAGTCAAGTGGATGCCAATACCGTGAAGGAAGAGTACG
AGCTCCTAGTCCGCACAAGAAAGTACAGCTGTGCTATGTCGGAGGACATC
GCTAAAAACAGAAAGTATTTGTGCAGAAGCACTATACCCACCACGTTAAC
GCAGAATTTGTCGCCGAGTTCACCAGGAAAAAGAATGCTATCTACAATCT
GACGCTCATGAGCAATTTCCTGGGAGAAGTGGTGCGCAAAATACACTCGA
GTATGACAGATTCTTTAGATTTGGTGAATCCTTATGTTCAACTAATCCCC
GGTTTTGAAAAAGCTCTCCGATTGATAGGGTTTGAGTCTGTCGGTTCCTC
ATCCATCAAGATTGACATGGAGAAGATTTCTAATGAGGCGAGGAAAAGTA
TGGAGGGCACTGTCGCCCTTTCTACTACACTGAAGCTGGATAGAAAGCCT
CGGGGCAACACGTTGTTGTCACAATTCAACTTCTATCTCGAAAGAGTTAT
CGGATACCACCTACAGTATCATAGGGTCCGCCGTGAAGGACACTCTGCGG
CGGCCTACTCTCTCGTGTCTACTATACCGCCTGAGTATCTGGACAACATG
CAGTACTCCAACGAATGGTTTGAAGCACATTGCCCAAGTTTTGATTTGCA
TATGAACTACCCGAGAGGCACCGAGCTTGCGTATATGCGAACATTGATGG
CGCCTTCAACTACACGTGTGTCATCGGATCAGCTTGCGGAGGTGGCTTGT
GTGATTGTGCTTTACATCAAGCATCACTCCGCGTCCATGCGGTGGG
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Coding sequence (CDS) from alignment at Scaffold_242:934752..935647+

>EsuBft2792_3a-0001 ID=EsuBft2792_3a-0001|Name=EsuBft2792_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=132bp|location=Sequence derived from alignment at Scaffold_242:934752..935647+ (Ectocarpus subulatus male Bft15b)
ATGCCAGCACGAACAAGGGTTACTACGACGGATCTCTTAAGTCAAGTTGG
ATGCCAATACCGTGAAGGAAGAGTACGAGCTCCTAGTCCGCACAAGAAAG
TACAGCTGTGCTATGTCGGAGGACATCGCTAA
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