EsuBft895_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft895_7a-0001
Unique NameEsuBft895_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:611381..612514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft895_7
Protein domainsPF13551
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length45
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft895_7aEsuBft895_7aEctocarpus subulatus male Bft15bgeneScaffold_242 611381..612514 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft895_7a-0001-exonEsuBft895_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 611381..611755 -
EsuBft895_7a-0001-exonagat-exon-60883Ectocarpus subulatus male Bft15bexonScaffold_242 612438..612514 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft895_7a-0001-exonagat-three_prime_utr-22838Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 611381..611404 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft895_7a-0001-cdsEsuBft895_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 611405..611755 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft895_7a-0001-exonagat-five_prime_utr-14808Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 612495..612514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft895_7a-0001EsuBft895_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 611405..612494 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft895_7a-0001 ID=EsuBft895_7a-0001|Name=EsuBft895_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=452bp|location=Sequence derived from alignment at Scaffold_242:611381..612514- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGCAGTCGCGGATTATTCTCATGCTGTACTTCGACCTGGTGAAAGGAGGC
AGCTCTGAGAACCACGCAAAGGAGCAGGTCGCGAAGACCTTGAGGATCGG
TACGGACAAGGTCCTGGCGGTTCGCACACTCTGGTATGACAAGCAGGAGT
TGTACGAGACCAACGGGAAGGGGCGAGGCAAGGCCACCAGCGTCGACGAC
GGGCGACGTGTCATTACCAAGGAGCAAGAGGATGGACTGCGCGAGTTCAT
CAAGGGCGAGCACGAGGCGGGACGTCAGGTCTTCCGCCGTACCGTCAAGG
ATTACTTGGAGTGTTCGTGCGGATTAGAGATGTCGAATCGTGCTATGAGA
AGGTTGCTGCAGCGCCTTGGCTTCAAGCGCCGTAGGGGTAGGATCAAAAT
ACCCCCGTTGAACGAGGAGAGGAATTAACCTCATCCGCCTCTTCCTTAAG
AT
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protein sequence of EsuBft895_7a-0001

>EsuBft895_7 ID=EsuBft895_7|Name=EsuBft895_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=135bp
MLYFDLVKGGSSENHAKEQVAKTLRIGTDKVLAVRTLWYDKQELYETNGK
GRGKATSVDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTVKDYLECSC
GLEMSNRAMRRLLQRLGFKRRRGRIKIPPLNEERN
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mRNA from alignment at Scaffold_242:611381..612514-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft895_7a-0001 ID=EsuBft895_7a-0001|Name=EsuBft895_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1134bp|location=Sequence derived from alignment at Scaffold_242:611381..612514- (Ectocarpus subulatus male Bft15b)
AGCAGTCGCGGATTATTCTCATGCTGTACTTCGACCTGGTGAAAGGAGGC
AGCTCTGAGAACCACGCAAAGGAGCAGGTGAGAACCAAGAAACATGGCTG
TTGCGTACAAATATCAGTATAAAGACGCATGTCGTTGTTACGTTTTTACA
GCAGTGCCATGTTCTTTTTTGGTGCAAATGTATATATGCATATACATACA
TCCCACCCAAGATTTGTACAAGCAACAACAGTGCTTGACATCATGCCAGT
ACCGCTGCCGGCCCATATCGTCACACTGCTTGCACTACTGTACTGATGCC
CATTACTGCTGTATAATACTTGAGTGGTATGTATAACGGTATGCTGCGAG
CTGTACAGCAGTGTATCAGTACAGCAGTTACAGCAGCGCTTTGTACCGCT
GAATTTAAAGGAATGTATGTGCATGGCACCACCATTCTCCTCGCGTGCGC
TGTACGTTGTCTACACTCTGCCGTCCCTTTAACACCGGCTTTCGTACACC
AACGCCATACACTGCAACGCAATACACTGCTGTATTCTTACAAACTTTTT
CCCACCCTCCCTCTGTGTGGATGACCCATCTTTATCAGGTCGCGAAGACC
TTGAGGATCGGTACGGACAAGGTCCTGGCGGTTCGCACACTCTGGTATGA
CAAGCAGGAGTTGTACGAGACCAACGGGAAGGGGCGAGGCAAGGCCACCA
GCGTCGACGACGGGCGCGTGCCATCACCAAGGATNGTGTGGATGACCCAT
CTTTATCAGGTCGCGAAGACCTTGAGGATCGGTACGGACAAGGTCCTGGC
GGTTCGCACACTCTGGTATGACAAGCAGGAGTTGTACGAGACCAACGGGA
AGGGGCGAGGCAAGGCCACCAGCGTCGACGACGGGCGACGTGTCATTACC
AAGGAGCAAGAGGATGGACTGCGCGAGTTCATCAAGGGCGAGCACGAGGC
GGGACGTCAGGTCTTCCGCCGTACCGTCAAGGATTACTTGGAGTGTTCGT
GCGGATTAGAGATGTCGAATCGTGCTATGAGAAGGTTGCTGCAGCGCCTT
GGCTTCAAGCGCCGTAGGGGTAGGATCAAAATACCCCCGTTGAACGAGGA
GAGGAATTAACCTCATCCGCCTCTTCCTTAAGAT
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Coding sequence (CDS) from alignment at Scaffold_242:611381..612514-

>EsuBft895_7a-0001 ID=EsuBft895_7a-0001|Name=EsuBft895_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=408bp|location=Sequence derived from alignment at Scaffold_242:611381..612514- (Ectocarpus subulatus male Bft15b)
ATGCTGTACTTCGACCTGGTGAAAGGAGGCAGCTCTGAGAACCACGCAAA
GGAGCAGGTCGCGAAGACCTTGAGGATCGGTACGGACAAGGTCCTGGCGG
TTCGCACACTCTGGTATGACAAGCAGGAGTTGTACGAGACCAACGGGAAG
GGGCGAGGCAAGGCCACCAGCGTCGACGACGGGCGACGTGTCATTACCAA
GGAGCAAGAGGATGGACTGCGCGAGTTCATCAAGGGCGAGCACGAGGCGG
GACGTCAGGTCTTCCGCCGTACCGTCAAGGATTACTTGGAGTGTTCGTGC
GGATTAGAGATGTCGAATCGTGCTATGAGAAGGTTGCTGCAGCGCCTTGG
CTTCAAGCGCCGTAGGGGTAGGATCAAAATACCCCCGTTGAACGAGGAGA
GGAATTAA
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