EsuBft919_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft919_8a-0001
Unique Name	EsuBft919_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_11	contig	Scaffold_11:164019..166238 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft919_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	222
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft919_8a	EsuBft919_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_11 164019..166238 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft919_8a-0001-exon	EsuBft919_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_11 164019..166238 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft919_8a-0001-cds	EsuBft919_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_11 164019..164366 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft919_8a-0001-exon	agat-three_prime_utr-23036	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_11 164367..166238 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft919_8a-0001	EsuBft919_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_11 164019..164366 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_11:164019..166238+
coding sequence from alignment at Scaffold_11:164019..166238+

spliced messenger RNA

>EsuBft919_8a-0001 ID=EsuBft919_8a-0001|Name=EsuBft919_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2220bp|location=Sequence derived from alignment at Scaffold_11:164019..166238+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAAGGAGTTCACGGAGGCCCTGCTTGGCGCGGCGGAGACGGAGCT
GTCTGAGGAACCCCGGAGGCGGCGCACCCCGGAATGGAACATGACCGCCG
CGGCACGGGCAGCCCTGGCGACCGCCCTTGACAAGCGACGGGCGGCGCGG
CATGCCTTCAAGGCCAGACCGAACGCAGCAACGTGGAGGATCCTCAAAGC
AGCGTGCAAGGGGGTGAAGGCAACAATCGCAACGAGCGTCTACGACCACC
TGGAAGGGTACGTGACGGAGCTCGAAGCGATTTACCAGGACCGCGACATG
CGGGGGCTGTACCAACACCTCAAGCGATCAACGGGCCTCAGCGNNNNNNN
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CGCGTTCAGACTGTCTCTACGGATATCCCTGTCTCTGTGCGAGTCTGTTT
ATGTCCTCGTCTGTCTTTGGTTTGTTTCGTTTTTGTTTTGTTTTTACTGG
CACGTACTGTTGACCCTTGGGGTCCTTCCGGAAGGCTACCCCCCAGGCTG
GTGGTGCGCACGTTCCACTATTTATTTGTTTATTTGTTTCTGATTCTTTT
GTTTTCTTGTATTTCATCGC

protein sequence of EsuBft919_8a-0001

>EsuBft919_8 ID=EsuBft919_8|Name=EsuBft919_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=116bp
MAKEFTEALLGAAETELSEEPRRRRTPEWNMTAAARAALATALDKRRAAR
HAFKARPNAATWRILKAACKGVKATIATSVYDHLEGYVTELEAIYQDRDM
RGLYQHLKRSTGLSXX

mRNA from alignment at Scaffold_11:164019..166238+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft919_8a-0001 ID=EsuBft919_8a-0001|Name=EsuBft919_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2220bp|location=Sequence derived from alignment at Scaffold_11:164019..166238+ (Ectocarpus subulatus male Bft15b)
ATGGCGAAGGAGTTCACGGAGGCCCTGCTTGGCGCGGCGGAGACGGAGCT
GTCTGAGGAACCCCGGAGGCGGCGCACCCCGGAATGGAACATGACCGCCG
CGGCACGGGCAGCCCTGGCGACCGCCCTTGACAAGCGACGGGCGGCGCGG
CATGCCTTCAAGGCCAGACCGAACGCAGCAACGTGGAGGATCCTCAAAGC
AGCGTGCAAGGGGGTGAAGGCAACAATCGCAACGAGCGTCTACGACCACC
TGGAAGGGTACGTGACGGAGCTCGAAGCGATTTACCAGGACCGCGACATG
CGGGGGCTGTACCAACACCTCAAGCGATCAACGGGCCTCAGCGNNNNNNN
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CGCGTTCAGACTGTCTCTACGGATATCCCTGTCTCTGTGCGAGTCTGTTT
ATGTCCTCGTCTGTCTTTGGTTTGTTTCGTTTTTGTTTTGTTTTTACTGG
CACGTACTGTTGACCCTTGGGGTCCTTCCGGAAGGCTACCCCCCAGGCTG
GTGGTGCGCACGTTCCACTATTTATTTGTTTATTTGTTTCTGATTCTTTT
GTTTTCTTGTATTTCATCGC

Coding sequence (CDS) from alignment at Scaffold_11:164019..166238+

>EsuBft919_8a-0001 ID=EsuBft919_8a-0001|Name=EsuBft919_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=348bp|location=Sequence derived from alignment at Scaffold_11:164019..166238+ (Ectocarpus subulatus male Bft15b)
ATGGCGAAGGAGTTCACGGAGGCCCTGCTTGGCGCGGCGGAGACGGAGCT
GTCTGAGGAACCCCGGAGGCGGCGCACCCCGGAATGGAACATGACCGCCG
CGGCACGGGCAGCCCTGGCGACCGCCCTTGACAAGCGACGGGCGGCGCGG
CATGCCTTCAAGGCCAGACCGAACGCAGCAACGTGGAGGATCCTCAAAGC
AGCGTGCAAGGGGGTGAAGGCAACAATCGCAACGAGCGTCTACGACCACC
TGGAAGGGTACGTGACGGAGCTCGAAGCGATTTACCAGGACCGCGACATG
CGGGGGCTGTACCAACACCTCAAGCGATCAACGGGCCTCAGCGNNNNN