Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft509_4 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 90 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Basic leucine zipper and PAS domain protein |
| Ec32 ortholog | Ec-01_005650.1 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft509_4a-0001 ID=EsuBft509_4a-0001|Name=EsuBft509_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=906bp|location=Sequence derived from alignment at Scaffold_235:353083..354140- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCTCCCTGCAACCGCAGCCCTTGTTCCCGCGGCGTCGGTGGCCCGGCC
GCTGGGCGCGGGCAACGATGGCAAGGGCAGCGACTCCGTGTCCGGCAACA
GCAGCGGCTTCAGCGGCTTCAGCGGCAGCGGCGGCAGCGGCGGCAGCGGC
GACAGCAACGGCGCCGGCAGCCCGGACCTGGAGGACAGCGTCGACCTCGC
CAGCCCTGACCTCGACGACCAAGGCAGCAGCAACCGCGGCCGGTGCGGAC
ACCCTAGCTCCGAAGACGGGCACGCCAACAACGCCGTCAGCAGCGACTAC
GGCGCGGGCACCAGCAGCGGGAGCGTCAGCGGGGACGGCAACAGCGCCCA
GAACAATAGCAATGGCGGAGCACATCGGAGGGCAGGTGGCGGCGGCGGGA
GGCAGCCCCCTTCGGGTAAGCGTAAGAGAGAGCGGAGCGTGTGCGCCCCC
GTGCCGCCACCGCCCGCCGTGGTGGCCGCACCGCCGGTGGTGGCGGCCGT
GGGAAACCGGGGAAGCGGCGGCGGTGGTCAGAAGCAGCAGCAGCAGCAGC
AGCAACAACAGCAGCAAGCGACAGTTCACAAGGCGGCAGTAGCAGCAGCT
ACCACCGGCACCGGCCGTGCCCGCCGAGGAGGAGGAGGCGGTGCTGCGGG
TGGCCCGGAGCCGGAGGCGCGCGGGGGCGGGCGATCGGCCTCAGGGGGGA
CAGCAGATTGGGCAGGGGATGGAGCGTCACCAGTGTCGGCGCTCGCGGCA
CTGGCGGCTGCAGCGGCAGCTGCGTCTCAAGCGGCGCCCTTGACACAGGA
GCAGCAGCCCTCGAGGCGACTGGCCGCGAAGAAATCCATACTCTTCAGGC
ACGGAGCTGACTCTCAGTCTTGAAGTATAACCAACCTTGATCCGGGGAGG
AGCGTC back to topprotein sequence of EsuBft509_4a-0001 >EsuBft509_4 ID=EsuBft509_4|Name=EsuBft509_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=290bp
MLPATAALVPAASVARPLGAGNDGKGSDSVSGNSSGFSGFSGSGGSGGSG
DSNGAGSPDLEDSVDLASPDLDDQGSSNRGRCGHPSSEDGHANNAVSSDY
GAGTSSGSVSGDGNSAQNNSNGGAHRRAGGGGGRQPPSGKRKRERSVCAP
VPPPPAVVAAPPVVAAVGNRGSGGGGQKQQQQQQQQQQQATVHKAAVAAA
TTGTGRARRGGGGGAAGGPEPEARGGGRSASGGTADWAGDGASPVSALAA
LAAAAAAASQAAPLTQEQQPSRRLAAKKSILFRHGADSQS back to topmRNA from alignment at Scaffold_235:353083..354140- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft509_4a-0001 ID=EsuBft509_4a-0001|Name=EsuBft509_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1058bp|location=Sequence derived from alignment at Scaffold_235:353083..354140- (Ectocarpus subulatus male Bft15b)
ATGCTCCCTGCAACCGCAGCCCTTGTTCCCGTAAAACCTTACGGTAGGAC
CGATGCAGAGATGTCTGTGGCGGTGGAAATACGCACAAACCCAAGCGTAT
TGCCAAGAAACGCGAATAACGAGACGAAGCATGCACCAGGCTAACCTAGA
GCAACACATGCGCACACGTTCCCAACACACAGGCGGCGTCGGTGGCCCGG
CCGCTGGGCGCGGGCAACGATGGCAAGGGCAGCGACTCCGTGTCCGGCAA
CAGCAGCGGCTTCAGCGGCTTCAGCGGCAGCGGCGGCAGCGGCGGCAGCG
GCGACAGCAACGGCGCCGGCAGCCCGGACCTGGAGGACAGCGTCGACCTC
GCCAGCCCTGACCTCGACGACCAAGGCAGCAGCAACCGCGGCCGGTGCGG
ACACCCTAGCTCCGAAGACGGGCACGCCAACAACGCCGTCAGCAGCGACT
ACGGCGCGGGCACCAGCAGCGGGAGCGTCAGCGGGGACGGCAACAGCGCC
CAGAACAATAGCAATGGCGGAGCACATCGGAGGGCAGGTGGCGGCGGCGG
GAGGCAGCCCCCTTCGGGTAAGCGTAAGAGAGAGCGGAGCGTGTGCGCCC
CCGTGCCGCCACCGCCCGCCGTGGTGGCCGCACCGCCGGTGGTGGCGGCC
GTGGGAAACCGGGGAAGCGGCGGCGGTGGTCAGAAGCAGCAGCAGCAGCA
GCAGCAACAACAGCAGCAAGCGACAGTTCACAAGGCGGCAGTAGCAGCAG
CTACCACCGGCACCGGCCGTGCCCGCCGAGGAGGAGGAGGCGGTGCTGCG
GGTGGCCCGGAGCCGGAGGCGCGCGGGGGCGGGCGATCGGCCTCAGGGGG
GACAGCAGATTGGGCAGGGGATGGAGCGTCACCAGTGTCGGCGCTCGCGG
CACTGGCGGCTGCAGCGGCAGCTGCGTCTCAAGCGGCGCCCTTGACACAG
GAGCAGCAGCCCTCGAGGCGACTGGCCGCGAAGAAATCCATACTCTTCAG
GCACGGAGCTGACTCTCAGTCTTGAAGTATAACCAACCTTGATCCGGGGA
GGAGCGTC back to topCoding sequence (CDS) from alignment at Scaffold_235:353083..354140- >EsuBft509_4a-0001 ID=EsuBft509_4a-0001|Name=EsuBft509_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=873bp|location=Sequence derived from alignment at Scaffold_235:353083..354140- (Ectocarpus subulatus male Bft15b)
ATGCTCCCTGCAACCGCAGCCCTTGTTCCCGCGGCGTCGGTGGCCCGGCC
GCTGGGCGCGGGCAACGATGGCAAGGGCAGCGACTCCGTGTCCGGCAACA
GCAGCGGCTTCAGCGGCTTCAGCGGCAGCGGCGGCAGCGGCGGCAGCGGC
GACAGCAACGGCGCCGGCAGCCCGGACCTGGAGGACAGCGTCGACCTCGC
CAGCCCTGACCTCGACGACCAAGGCAGCAGCAACCGCGGCCGGTGCGGAC
ACCCTAGCTCCGAAGACGGGCACGCCAACAACGCCGTCAGCAGCGACTAC
GGCGCGGGCACCAGCAGCGGGAGCGTCAGCGGGGACGGCAACAGCGCCCA
GAACAATAGCAATGGCGGAGCACATCGGAGGGCAGGTGGCGGCGGCGGGA
GGCAGCCCCCTTCGGGTAAGCGTAAGAGAGAGCGGAGCGTGTGCGCCCCC
GTGCCGCCACCGCCCGCCGTGGTGGCCGCACCGCCGGTGGTGGCGGCCGT
GGGAAACCGGGGAAGCGGCGGCGGTGGTCAGAAGCAGCAGCAGCAGCAGC
AGCAACAACAGCAGCAAGCGACAGTTCACAAGGCGGCAGTAGCAGCAGCT
ACCACCGGCACCGGCCGTGCCCGCCGAGGAGGAGGAGGCGGTGCTGCGGG
TGGCCCGGAGCCGGAGGCGCGCGGGGGCGGGCGATCGGCCTCAGGGGGGA
CAGCAGATTGGGCAGGGGATGGAGCGTCACCAGTGTCGGCGCTCGCGGCA
CTGGCGGCTGCAGCGGCAGCTGCGTCTCAAGCGGCGCCCTTGACACAGGA
GCAGCAGCCCTCGAGGCGACTGGCCGCGAAGAAATCCATACTCTTCAGGC
ACGGAGCTGACTCTCAGTCTTGA back to top
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