EsuBft509_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft509_4a-0001
Unique NameEsuBft509_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_235contigScaffold_235:353083..354140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft509_4
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length90
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBasic leucine zipper and PAS domain protein
Ec32 orthologEc-01_005650.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft509_4aEsuBft509_4aEctocarpus subulatus male Bft15bgeneScaffold_235 353083..354140 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft509_4a-0001-exonagat-exon-85987Ectocarpus subulatus male Bft15bexonScaffold_235 353083..353958 -
EsuBft509_4a-0001-exonEsuBft509_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_235 354111..354140 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft509_4a-0001-exonagat-three_prime_utr-17422Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_235 353083..353115 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft509_4a-0001-cdsEsuBft509_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_235 353116..353958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft509_4a-0001EsuBft509_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_235 353116..354140 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft509_4a-0001 ID=EsuBft509_4a-0001|Name=EsuBft509_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=906bp|location=Sequence derived from alignment at Scaffold_235:353083..354140- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCCTGCAACCGCAGCCCTTGTTCCCGCGGCGTCGGTGGCCCGGCC
GCTGGGCGCGGGCAACGATGGCAAGGGCAGCGACTCCGTGTCCGGCAACA
GCAGCGGCTTCAGCGGCTTCAGCGGCAGCGGCGGCAGCGGCGGCAGCGGC
GACAGCAACGGCGCCGGCAGCCCGGACCTGGAGGACAGCGTCGACCTCGC
CAGCCCTGACCTCGACGACCAAGGCAGCAGCAACCGCGGCCGGTGCGGAC
ACCCTAGCTCCGAAGACGGGCACGCCAACAACGCCGTCAGCAGCGACTAC
GGCGCGGGCACCAGCAGCGGGAGCGTCAGCGGGGACGGCAACAGCGCCCA
GAACAATAGCAATGGCGGAGCACATCGGAGGGCAGGTGGCGGCGGCGGGA
GGCAGCCCCCTTCGGGTAAGCGTAAGAGAGAGCGGAGCGTGTGCGCCCCC
GTGCCGCCACCGCCCGCCGTGGTGGCCGCACCGCCGGTGGTGGCGGCCGT
GGGAAACCGGGGAAGCGGCGGCGGTGGTCAGAAGCAGCAGCAGCAGCAGC
AGCAACAACAGCAGCAAGCGACAGTTCACAAGGCGGCAGTAGCAGCAGCT
ACCACCGGCACCGGCCGTGCCCGCCGAGGAGGAGGAGGCGGTGCTGCGGG
TGGCCCGGAGCCGGAGGCGCGCGGGGGCGGGCGATCGGCCTCAGGGGGGA
CAGCAGATTGGGCAGGGGATGGAGCGTCACCAGTGTCGGCGCTCGCGGCA
CTGGCGGCTGCAGCGGCAGCTGCGTCTCAAGCGGCGCCCTTGACACAGGA
GCAGCAGCCCTCGAGGCGACTGGCCGCGAAGAAATCCATACTCTTCAGGC
ACGGAGCTGACTCTCAGTCTTGAAGTATAACCAACCTTGATCCGGGGAGG
AGCGTC
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protein sequence of EsuBft509_4a-0001

>EsuBft509_4 ID=EsuBft509_4|Name=EsuBft509_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=290bp
MLPATAALVPAASVARPLGAGNDGKGSDSVSGNSSGFSGFSGSGGSGGSG
DSNGAGSPDLEDSVDLASPDLDDQGSSNRGRCGHPSSEDGHANNAVSSDY
GAGTSSGSVSGDGNSAQNNSNGGAHRRAGGGGGRQPPSGKRKRERSVCAP
VPPPPAVVAAPPVVAAVGNRGSGGGGQKQQQQQQQQQQQATVHKAAVAAA
TTGTGRARRGGGGGAAGGPEPEARGGGRSASGGTADWAGDGASPVSALAA
LAAAAAAASQAAPLTQEQQPSRRLAAKKSILFRHGADSQS
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mRNA from alignment at Scaffold_235:353083..354140-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft509_4a-0001 ID=EsuBft509_4a-0001|Name=EsuBft509_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1058bp|location=Sequence derived from alignment at Scaffold_235:353083..354140- (Ectocarpus subulatus male Bft15b)
ATGCTCCCTGCAACCGCAGCCCTTGTTCCCGTAAAACCTTACGGTAGGAC
CGATGCAGAGATGTCTGTGGCGGTGGAAATACGCACAAACCCAAGCGTAT
TGCCAAGAAACGCGAATAACGAGACGAAGCATGCACCAGGCTAACCTAGA
GCAACACATGCGCACACGTTCCCAACACACAGGCGGCGTCGGTGGCCCGG
CCGCTGGGCGCGGGCAACGATGGCAAGGGCAGCGACTCCGTGTCCGGCAA
CAGCAGCGGCTTCAGCGGCTTCAGCGGCAGCGGCGGCAGCGGCGGCAGCG
GCGACAGCAACGGCGCCGGCAGCCCGGACCTGGAGGACAGCGTCGACCTC
GCCAGCCCTGACCTCGACGACCAAGGCAGCAGCAACCGCGGCCGGTGCGG
ACACCCTAGCTCCGAAGACGGGCACGCCAACAACGCCGTCAGCAGCGACT
ACGGCGCGGGCACCAGCAGCGGGAGCGTCAGCGGGGACGGCAACAGCGCC
CAGAACAATAGCAATGGCGGAGCACATCGGAGGGCAGGTGGCGGCGGCGG
GAGGCAGCCCCCTTCGGGTAAGCGTAAGAGAGAGCGGAGCGTGTGCGCCC
CCGTGCCGCCACCGCCCGCCGTGGTGGCCGCACCGCCGGTGGTGGCGGCC
GTGGGAAACCGGGGAAGCGGCGGCGGTGGTCAGAAGCAGCAGCAGCAGCA
GCAGCAACAACAGCAGCAAGCGACAGTTCACAAGGCGGCAGTAGCAGCAG
CTACCACCGGCACCGGCCGTGCCCGCCGAGGAGGAGGAGGCGGTGCTGCG
GGTGGCCCGGAGCCGGAGGCGCGCGGGGGCGGGCGATCGGCCTCAGGGGG
GACAGCAGATTGGGCAGGGGATGGAGCGTCACCAGTGTCGGCGCTCGCGG
CACTGGCGGCTGCAGCGGCAGCTGCGTCTCAAGCGGCGCCCTTGACACAG
GAGCAGCAGCCCTCGAGGCGACTGGCCGCGAAGAAATCCATACTCTTCAG
GCACGGAGCTGACTCTCAGTCTTGAAGTATAACCAACCTTGATCCGGGGA
GGAGCGTC
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Coding sequence (CDS) from alignment at Scaffold_235:353083..354140-

>EsuBft509_4a-0001 ID=EsuBft509_4a-0001|Name=EsuBft509_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=873bp|location=Sequence derived from alignment at Scaffold_235:353083..354140- (Ectocarpus subulatus male Bft15b)
ATGCTCCCTGCAACCGCAGCCCTTGTTCCCGCGGCGTCGGTGGCCCGGCC
GCTGGGCGCGGGCAACGATGGCAAGGGCAGCGACTCCGTGTCCGGCAACA
GCAGCGGCTTCAGCGGCTTCAGCGGCAGCGGCGGCAGCGGCGGCAGCGGC
GACAGCAACGGCGCCGGCAGCCCGGACCTGGAGGACAGCGTCGACCTCGC
CAGCCCTGACCTCGACGACCAAGGCAGCAGCAACCGCGGCCGGTGCGGAC
ACCCTAGCTCCGAAGACGGGCACGCCAACAACGCCGTCAGCAGCGACTAC
GGCGCGGGCACCAGCAGCGGGAGCGTCAGCGGGGACGGCAACAGCGCCCA
GAACAATAGCAATGGCGGAGCACATCGGAGGGCAGGTGGCGGCGGCGGGA
GGCAGCCCCCTTCGGGTAAGCGTAAGAGAGAGCGGAGCGTGTGCGCCCCC
GTGCCGCCACCGCCCGCCGTGGTGGCCGCACCGCCGGTGGTGGCGGCCGT
GGGAAACCGGGGAAGCGGCGGCGGTGGTCAGAAGCAGCAGCAGCAGCAGC
AGCAACAACAGCAGCAAGCGACAGTTCACAAGGCGGCAGTAGCAGCAGCT
ACCACCGGCACCGGCCGTGCCCGCCGAGGAGGAGGAGGCGGTGCTGCGGG
TGGCCCGGAGCCGGAGGCGCGCGGGGGCGGGCGATCGGCCTCAGGGGGGA
CAGCAGATTGGGCAGGGGATGGAGCGTCACCAGTGTCGGCGCTCGCGGCA
CTGGCGGCTGCAGCGGCAGCTGCGTCTCAAGCGGCGCCCTTGACACAGGA
GCAGCAGCCCTCGAGGCGACTGGCCGCGAAGAAATCCATACTCTTCAGGC
ACGGAGCTGACTCTCAGTCTTGA
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