EsuBft954_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft954_6a-0001
Unique NameEsuBft954_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_235contigScaffold_235:229800..230947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft954_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length77
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft954_6aEsuBft954_6aEctocarpus subulatus male Bft15bgeneScaffold_235 229800..230947 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_6a-0001-exonEsuBft954_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_235 229800..230411 +
EsuBft954_6a-0001-exonagat-exon-47320Ectocarpus subulatus male Bft15bexonScaffold_235 230783..230947 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_6a-0001-exonagat-five_prime_utr-15263Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_235 229800..229934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_6a-0001-cdsEsuBft954_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_235 229935..230411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_6a-0001EsuBft954_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_235 229935..230947 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft954_6a-0001 ID=EsuBft954_6a-0001|Name=EsuBft954_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=777bp|location=Sequence derived from alignment at Scaffold_235:229800..230947+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAAAAAAAACACACACACACACGCGATCAAGAGAAAAACAAGACACACAC
TCACGAACAGCGGATAGACGCAACACAAACGCGGCGCGCGTGCTGCTGCA
GACCCGAAGAGCTGTACGCAGCGCAGAGGCGCACCATGCCTTGTGCGGAC
GGTGAGCTGTGCCACCAACCAGACAAGACGCCGCAAGCCCCTCATGGCCA
CGTCTGTCATGGAGGATGTGGCGGGCGGCTCCACGGCAACTGCGGCAGCA
TGGTTGGCGACATCGAAACAAGGCGAATCTGCTGCTCGTGCGTCGCAAGA
GCTGGCAAGCGCAAAGAGATACCAGCTGAGGGTGCTGAGGGTGCTGGGGC
GGGACCATCTCAACGCCCGACGAAGAAGAAACGGGGGAGCGTGAAGGCTT
CGTGTGGTGCTCGTGCGCGGGTGGACATCAATGGGAAGCTTGACATCCTC
AAGCTGATCGATGCCAAGATCTCCTACGCGCAGATCGCAGACCGCTTCAA
GTGCTCTGTGCGGTTTCTTGTGACGTTGAAGTCTGACCGGAAGAAGATCG
AGGCGGCAGCTGCTGCAGGTGCCGGCAGTCAGAAAACTGCACGCAAAGCA
GAGTTTCAAGAGATGAAACGGAAGATGGCGGTGGCGGTGAGAACACGGGG
CGCGAGCGCCGTGCTCCACCGGCTTATAGTGAGCTGTCACCTCACTTCGG
CGTCCTGGAATCGGCAGCAGATGAGAGTGGCAATGGAGACGCGGCGTTCC
ATCTGCAGAAAGCAAAAATGGCGATGA
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protein sequence of EsuBft954_6a-0001

>EsuBft954_6 ID=EsuBft954_6|Name=EsuBft954_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=213bp
MPCADGELCHQPDKTPQAPHGHVCHGGCGGRLHGNCGSMVGDIETRRICC
SCVARAGKRKEIPAEGAEGAGAGPSQRPTKKKRGSVKASCGARARVDING
KLDILKLIDAKISYAQIADRFKCSVRFLVTLKSDRKKIEAAAAAGAGSQK
TARKAEFQEMKRKMAVAVRTRGASAVLHRLIVSCHLTSASWNRQQMRVAM
ETRRSICRKQKWR
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mRNA from alignment at Scaffold_235:229800..230947+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft954_6a-0001 ID=EsuBft954_6a-0001|Name=EsuBft954_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1148bp|location=Sequence derived from alignment at Scaffold_235:229800..230947+ (Ectocarpus subulatus male Bft15b)
AAAAAAAAACACACACACACACGCGATCAAGAGAAAAACAAGACACACAC
TCACGAACAGCGGATAGACGCAACACAAACGCGGCGCGCGTGCTGCTGCA
GACCCGAAGAGCTGTACGCAGCGCAGAGGCGCACCATGCCTTGTGCGGAC
GGTGAGCTGTGCCACCAACCAGACAAGACGCCGCAAGCCCCTCATGGCCA
CGTCTGTCATGGAGGATGTGGCGGGCGGCTCCACGGCAACTGCGGCAGCA
TGGTTGGCGACATCGAAACAAGGCGAATCTGCTGCTCGTGCGTCGCAAGA
GCTGGCAAGCGCAAAGAGATACCAGCTGAGGGTGCTGAGGGTGCTGGGGC
GGGACCATCTCAACGCCCGACGAAGAAGAAACGGGGGAGCGTGAAGGCTT
CGTGTGGTGCTCGTGCGCGGGTGGACATCAATGGGAAGCTTGACATCCTC
AAGCTGATCGATGCCAAGATCTCCTACGCGCAGATCGCAGACCGCTTCAA
GTGCTCTGTGCGGTTTCTTGTGACGTTGAAGTCTGACCGGAAGAAGATCG
AGGCGGCAGCTGCTGCAGGTGCCGGCAGTCAGAAAACTGCACGCAAAGCA
GAGTTTCAAGAGGTGAGCTACACCTCTTCTTGCTGCTGCTGTGAGCTCGA
TTTTTAAAAAAGCAAGCTCATGTTTTCCCCCGCCTTTTATTTCTGGTGTC
GAGGCTCTCTGTCCCACTTTGTTTTTTTTTCACTTTTTTCTTTTTGTTGT
GCTTGTTTTTTTTTTCGCTTGATTTATTTTTTTTCGCCTCGCTGTGTGCC
ATTCTTCTTTGTCTTTCTCTTTCTCTTTGTTCCTTGTGTTGGTTGCAATT
CTTTTTTCTTTTCGTCGCTCGTCTTGCCTCCCTTGTTTCCGATTTCATCG
TTTTTCTCAATGTCAATCCTACATTTATTCATCTGCAACGCTTCTTGTTT
TCTGTTGCCCACAACGTTTCCAACTGTATATAGATGAAACGGAAGATGGC
GGTGGCGGTGAGAACACGGGGCGCGAGCGCCGTGCTCCACCGGCTTATAG
TGAGCTGTCACCTCACTTCGGCGTCCTGGAATCGGCAGCAGATGAGAGTG
GCAATGGAGACGCGGCGTTCCATCTGCAGAAAGCAAAAATGGCGATGA
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Coding sequence (CDS) from alignment at Scaffold_235:229800..230947+

>EsuBft954_6a-0001 ID=EsuBft954_6a-0001|Name=EsuBft954_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=642bp|location=Sequence derived from alignment at Scaffold_235:229800..230947+ (Ectocarpus subulatus male Bft15b)
ATGCCTTGTGCGGACGGTGAGCTGTGCCACCAACCAGACAAGACGCCGCA
AGCCCCTCATGGCCACGTCTGTCATGGAGGATGTGGCGGGCGGCTCCACG
GCAACTGCGGCAGCATGGTTGGCGACATCGAAACAAGGCGAATCTGCTGC
TCGTGCGTCGCAAGAGCTGGCAAGCGCAAAGAGATACCAGCTGAGGGTGC
TGAGGGTGCTGGGGCGGGACCATCTCAACGCCCGACGAAGAAGAAACGGG
GGAGCGTGAAGGCTTCGTGTGGTGCTCGTGCGCGGGTGGACATCAATGGG
AAGCTTGACATCCTCAAGCTGATCGATGCCAAGATCTCCTACGCGCAGAT
CGCAGACCGCTTCAAGTGCTCTGTGCGGTTTCTTGTGACGTTGAAGTCTG
ACCGGAAGAAGATCGAGGCGGCAGCTGCTGCAGGTGCCGGCAGTCAGAAA
ACTGCACGCAAAGCAGAGTTTCAAGAGATGAAACGGAAGATGGCGGTGGC
GGTGAGAACACGGGGCGCGAGCGCCGTGCTCCACCGGCTTATAGTGAGCT
GTCACCTCACTTCGGCGTCCTGGAATCGGCAGCAGATGAGAGTGGCAATG
GAGACGCGGCGTTCCATCTGCAGAAAGCAAAAATGGCGATGA
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