EsuBft321_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft321_2a-0001
Unique NameEsuBft321_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_235contigScaffold_235:30577..34522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog40559.M7UW86
ProteomeIdEsuBft321_2
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsIPR017884
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsIPR009057
Protein domainsIPR017930
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsIPR001005
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl4751|Fungi
Length122
Hectar predicted targeting categoryother localisation
Evalue2.66e-05
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,38EUR@33154|Opisthokonta,3P43R@4751|Fungi,3QX21@4890|Ascomycota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionMyb-like DNA-binding domain
COG categoryK
Cross References
External references for this mRNA
DatabaseAccession
GO0003677
GO0003682
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft321_2aEsuBft321_2aEctocarpus subulatus male Bft15bgeneScaffold_235 30577..34522 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_2a-0001-exonagat-exon-90295Ectocarpus subulatus male Bft15bexonScaffold_235 30577..31119 +
EsuBft321_2a-0001-exonagat-exon-90296Ectocarpus subulatus male Bft15bexonScaffold_235 31484..31813 +
EsuBft321_2a-0001-exonEsuBft321_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_235 32593..32772 +
EsuBft321_2a-0001-exonagat-exon-90297Ectocarpus subulatus male Bft15bexonScaffold_235 34355..34522 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_2a-0001-cdsEsuBft321_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_235 30577..31119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_2a-0001EsuBft321_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_235 30577..34522 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft321_2a-0001 ID=EsuBft321_2a-0001|Name=EsuBft321_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1221bp|location=Sequence derived from alignment at Scaffold_235:30577..34522+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCCAACCGCAGCAGCGGCAGCAGCAACAGCAGCAGCAACAGCAGC
AGCAGAAGCAGCAACAACGAGAGGGGGGGAGTCATCGTCGGGCAGCTGGA
ACAGGAAACGAGGGGACACGGTGACCACGACGGACAGCGTCCTGGCGTGG
GCTCTCAGGAGCATCGGGGGGAACGGGGACGAAGGCACGAAGCGTAACCT
TGGCGGTGTCGGTGACGCCAATAGCTGTGGCAGTAGCGGTGCAGGTGGCG
GCGGCGGCGGCGGCGGTGACAGCTCTCCTGGCGTGATCTACGAGGAAGCC
AAGGGTGATGGTGGTGGTCCCATTTCACGGTTGTTGCCAAGGGAAAGAGA
GGGCGTCAACCGGAGCGGCCGCGGAGGCTCGAACGGCGATAGCGGCGACG
TTGCTGGCAGCGGTGACGGTGCCATCGGTGCTCGAGATGATGGTTCGTCT
CGAAAGCGGTCGCTGGGAGCGAGAGAAGATAGAGAGGAGGAGAGCAAGAA
GCCCGGGTTTTGGGACAAGGACGAAAATACACGGTTTCTGCAGCACGGTG
GTGCGTGGGCACGGCTCGCACAAAAACACGCTGAGCTCGGGGTGGTAGCC
GTGGAAGAAAGCGAAGGTGAAGATGGTGCTCATGCCTCTCGTCGCAATAA
GGACGCCAACGCACATGTCGATGACGGCCGAGATAGTGATGGCGGTGGCG
GAGATAAGCGTCGTACATCACTAGCAGGGCCGGCCGGTGAAGGCACGAAG
CAGCCGGGGAAGAAGGCGCGCAAGGCGGGGCACAAGGGCAGCAAGCAGGG
GAAAGATAAGAAGCAGAAGAGTCGGCGCGGGTCCAATGAATGGGACGACG
AAGAGCACGAGCGGTTTGTCAAGGGTTTCGAGAGGCACGGCAAGGCGTGG
GCGGAAGTGGCGAAAGTGGTGCGGACGCGGGACGAGGGTCAGGTTCAAGC
GTACTCTTCCCGTTGGGTTACCCTTGCCGGTGGCCTTCACGAAAGCTTTC
GCAAGATTGGCGAGTGGGAAGACGACGAGCACGACCGGTTTATGGAGGCA
AGAGGGGTCAAGCTGTACGGCCGCTCGTGGGTCGATGTCGCGAGCGTGGT
GCGCACGCGAACGAACCGGCAAGTGATCATGCACGCCATGCACCGCCTGA
ACGACGACCTGTCCTCCAAGCCCAGCTTACGGGCTTGCACATCAACAGGT
GGGTGGAAGCTGGCGCCTTAG
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protein sequence of EsuBft321_2a-0001

>EsuBft321_2 ID=EsuBft321_2|Name=EsuBft321_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=406bp
MNPTAAAAAATAAATAAAEAATTRGGESSSGSWNRKRGDTVTTTDSVLAW
ALRSIGGNGDEGTKRNLGGVGDANSCGSSGAGGGGGGGGDSSPGVIYEEA
KGDGGGPISRLLPREREGVNRSGRGGSNGDSGDVAGSGDGAIGARDDGSS
RKRSLGAREDREEESKKPGFWDKDENTRFLQHGGAWARLAQKHAELGVVA
VEESEGEDGAHASRRNKDANAHVDDGRDSDGGGGDKRRTSLAGPAGEGTK
QPGKKARKAGHKGSKQGKDKKQKSRRGSNEWDDEEHERFVKGFERHGKAW
AEVAKVVRTRDEGQVQAYSSRWVTLAGGLHESFRKIGEWEDDEHDRFMEA
RGVKLYGRSWVDVASVVRTRTNRQVIMHAMHRLNDDLSSKPSLRACTSTG
GWKLAP
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mRNA from alignment at Scaffold_235:30577..34522+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft321_2a-0001 ID=EsuBft321_2a-0001|Name=EsuBft321_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3946bp|location=Sequence derived from alignment at Scaffold_235:30577..34522+ (Ectocarpus subulatus male Bft15b)
ATGAACCCAACCGCAGCAGCGGCAGCAGCAACAGCAGCAGCAACAGCAGC
AGCAGAAGCAGCAACAACGAGAGGGGGGGAGTCATCGTCGGGCAGCTGGA
ACAGGAAACGAGGGGACACGGTGACCACGACGGACAGCGTCCTGGCGTGG
GCTCTCAGGAGCATCGGGGGGAACGGGGACGAAGGCACGAAGCGTAACCT
TGGCGGTGTCGGTGACGCCAATAGCTGTGGCAGTAGCGGTGCAGGTGGCG
GCGGCGGCGGCGGCGGTGACAGCTCTCCTGGCGTGATCTACGAGGAAGCC
AAGGGTGATGGTGGTGGTCCCATTTCACGGTTGTTGCCAAGGGAAAGAGA
GGGCGTCAACCGGAGCGGCCGCGGAGGCTCGAACGGCGATAGCGGCGACG
TTGCTGGCAGCGGTGACGGTGCCATCGGTGCTCGAGATGATGGTTCGTCT
CGAAAGCGGTCGCTGGGAGCGAGAGAAGATAGAGAGGAGGAGAGCAAGAA
GCCCGGGTTTTGGGACAAGGACGAAAATACACGGTTTCTGCAGGTATGCT
GTTATCATGCTGCGATGGAGTGGGGCAAACACCTTTGGTTGGCAAGGGTG
GAATGTCTAACTCCTAGCCCTGCTTCTGTTTTGCTCGAGTAATAACGATC
ATGGGTTTGTGAAGTAGTCAAGATGCCGTTGTTGATTCTCCTCAACATGC
TTCGAGGAAAAGAGAGCGCAAGTTTTAGAGCTACCTCTACCTGCCTGTCG
CTCTTGTCTGCCTGTCTGCCTGTCTGTCTATCTTGTCTCTCGCTGTTTGC
CTCTCTGTCTCATTTCTGTGTTTTGTCCCTAACCATCTCCCGCCCCGCCC
CCCTACCATTAACCCTAATCCGTGATTGTTGTTCTCTGTGTAAAGGGTGT
CGCGCAGCACGGTGGTGCGTGGGCACGGCTCGCACAAAAACACGCTGAGC
TCGGGGTGGTAGCCGTGGAAGAAAGCGAAGGTGAAGATGGTGCTCATGCC
TCTCGTCGCAATAAGGACGCCAACGCACATGTCGATGACGGCCGAGATAG
TGATGGCGGTGGCGGAGATAAGCGTCGTACATCACTAGCAGGGCCGGCCG
GTGAAGGCACGAAGCAGCCGGGGAAGAAGGCGCGCAAGGCGGGGCACAAG
GGCAGCAAGCAGGGGAAAGATAAGAAGCAGAAGAGTCGGCGCGGGTCCAA
TGAATGGGACGACGAAGAGCACGAGCGGTTTGTCAAGGTAAGGTCAAGGT
GCGCGCGTTGTTGCTGAACGAAGTTGAGGATATGGTACGGAGGAACGAGC
GGCAGTAGCAAAAAAGGGTGGTTTGTGTTTGATGCTGGGTGCTTGGAAGC
AGTCTGGGCAAAAACCCTGCCGGAAAAATTAGTAAAAAGTATACTTCGGG
CTTGGCACATGTATGTACACCAAACACCGTATAGTCTTTGAACGGAAAGA
CACCCCGTGATTAAGAAACTGTATCGCAAGCTCAATTTGAGCAGTTCATT
CGTCGTACAGCAGTTGTGGGGCACTGCTGGTGTAACGGCTATGCTTCGGA
GACTCTCCAACATCTCTCTGTCGAAGACGGTTCCTTCTTGGGGCGGGGTG
GTTTCAACATAACCATTGGAAGCGTCCCGTCTCCCCAACTTCTATCAATG
ATAAGCTCCCTATTTTCTTTATCGACTACCCCCATCCCCCTACCCTGTAC
TGGGGCATAGGAAGTGGGTTGAAAAGGCGGGAAGTGAAATTTGTAGGACA
GATAGACTAGGGAAGACATTTTTGAGCCACCTTTGACCAAGTAGGAAAGA
ACGATTGGCCATGGGGGATCGGTCCTGTGGGAACAATGCTCCGTCCTGTC
GAGGACGCATGGTCAATGGTCTGACCGCTGACCGCTAAGGCATGCGAAAC
ATAAGAGTACGCCCCCCCACCCACCGCCCACCCCCTCTTGTTGTCCCTTC
GCTCCAACCATGGCGTGTGGTTGCGCGCGTGTGCCATGAACCTCTTCCTC
GCCCTGACATGACAAGGGTTTCGAGAGGCACGGCAAGGCGTGGGCGGAAG
TGGCGAAAGTGGTGCGGACGCGGGACGAGGGTCAGGTTCAAGCGTACTCT
TCCCGTTGGGTTACCCTTGCCGGTGGCCTTCACGAAAGCTTTCGCAAGAT
TGGCGAGTGGGAAGACGACGAGCACGACCGGTTTATGGAGGCAAGAGTTT
GGGCTTTTGGTAGGGGGAAACGGAATCGGAGATGCTTTGCCTTGTGTGGG
TGTTGCCACGTGTTTTTTTCAGAACCGCGTGTAGTCGTGCCGCGAGAGAC
CGGTTTCAAGGCCAATGCCCCGTCCCCCCTCCACCAAGTCGTGTGGTCAA
TGCAGACATGAGTGCCCCCCCCCTCCCTCTCCCAGTCAGCGAGAGCCGGG
ATTTCTGTCAGTTGGAGATGGTGTGGAGAGACTTCACCTTTGGAGCAGGA
GCCATTTACTGCCGGTCGGTGTGGGAACGACAGTTGCACAGAAGACAGAT
TTGACGACACCAAATGAGCGGTCGGGAACCCCCCCCCCCCATAATACGGG
TCTCCCTCGGTGTTTGCCATCGGGGTCGGGTTTTCGTCGCCTGGCAACGA
CGTTGTAAAACAAGCCGTCCCCCTCGGTGTTTGCCATCGGGGTTGGGTTT
TCGTCGCTTGGCAACGACGTTGTAAAACAAGCCAATTCACTTCGTGAACT
CGGCAACCAGGTTACCGTTTTTTTTTTTTACCTCCGTTTTTTTTTTTGGC
GGTAACCATAATGGTGGTCGAGTAGATCATGTTGTGCGGGGTGGAGAACC
CTCACTCCGCGCAAGGGGGATGATCGCACCACGTTGTGTTAAAATGGTCA
AGCACCCTCGAGGCAGTTACACAGTGCTTACAACTGTCTCTGGAAGTGAA
AGCACCAGAAAATAAATTAATTCATACGCAGCTGTCATCCGTACGCAAGG
AAGTAAGCACAAGATGCCGAAAACCCTTAGCAGGATGCAGCGCACCCTTC
ATGCGACTCGCCGAATATCTCACGGCGCTTCGCGCTTGGTGATGTGAGAG
CCTGGTCCGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGATGC
GAGGTCAATGGTCTAACGACTACGGCATGCACGACTATGAGTACACCCCC
CCCCCTCCGGTGTTTGCCTATCGGGATTGGGTTTTCGTCGCTTGGCAACG
ACGTTGTCAAACAAGCCAATTCACTTCGTGAACTCGGCAACCAGGTTACC
GTGTTTTTTTTTTACCTCTGATTTTTTTTTTGGCGGAAACCATAATGGTG
GTCGAGTAGATCATGTTGTGCGGGGTGGAGAACCCTCGCTCCGCGCAAGG
GGGATGATCGCACCACGTTGTGTTAAAATGGTGAAGCACCCTCGAGGCAG
TTACACAGTGCTTACAACTGTCTCTGGAAGTTTAAGCACCAGAAATTAAA
TTAATTCATACGCAGCTGTCATCCGTACGCAAGGAAGTATGTACAAGATA
CCGAAAACCCTTAGCAGGATGCAGCGCACCCTTCATGCGACTCGCCGAAT
ATCTCACGGCGCTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAA
CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCC
CCCATAATACGCCCTCTACCCTCGCCCGCGCGGGCGCCTCGCTTTGTCTC
GTGGCCCGTACCGTGGTACTCCCAACAGGGGGTCAAGCTGTACGGCCGCT
CGTGGGTCGATGTCGCGAGCGTGGTGCGCACGCGAACGAACCGGCAAGTG
ATCATGCACGCCATGCACCGCCTGAACGACGACCTGTCCTCCAAGCCCAG
CTTACGGGCTTGCACATCAACAGGTGGGTGGAAGCTGGCGCCTTAG
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Coding sequence (CDS) from alignment at Scaffold_235:30577..34522+

>EsuBft321_2a-0001 ID=EsuBft321_2a-0001|Name=EsuBft321_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1221bp|location=Sequence derived from alignment at Scaffold_235:30577..34522+ (Ectocarpus subulatus male Bft15b)
ATGAACCCAACCGCAGCAGCGGCAGCAGCAACAGCAGCAGCAACAGCAGC
AGCAGAAGCAGCAACAACGAGAGGGGGGGAGTCATCGTCGGGCAGCTGGA
ACAGGAAACGAGGGGACACGGTGACCACGACGGACAGCGTCCTGGCGTGG
GCTCTCAGGAGCATCGGGGGGAACGGGGACGAAGGCACGAAGCGTAACCT
TGGCGGTGTCGGTGACGCCAATAGCTGTGGCAGTAGCGGTGCAGGTGGCG
GCGGCGGCGGCGGCGGTGACAGCTCTCCTGGCGTGATCTACGAGGAAGCC
AAGGGTGATGGTGGTGGTCCCATTTCACGGTTGTTGCCAAGGGAAAGAGA
GGGCGTCAACCGGAGCGGCCGCGGAGGCTCGAACGGCGATAGCGGCGACG
TTGCTGGCAGCGGTGACGGTGCCATCGGTGCTCGAGATGATGGTTCGTCT
CGAAAGCGGTCGCTGGGAGCGAGAGAAGATAGAGAGGAGGAGAGCAAGAA
GCCCGGGTTTTGGGACAAGGACGAAAATACACGGTTTCTGCAGCACGGTG
GTGCGTGGGCACGGCTCGCACAAAAACACGCTGAGCTCGGGGTGGTAGCC
GTGGAAGAAAGCGAAGGTGAAGATGGTGCTCATGCCTCTCGTCGCAATAA
GGACGCCAACGCACATGTCGATGACGGCCGAGATAGTGATGGCGGTGGCG
GAGATAAGCGTCGTACATCACTAGCAGGGCCGGCCGGTGAAGGCACGAAG
CAGCCGGGGAAGAAGGCGCGCAAGGCGGGGCACAAGGGCAGCAAGCAGGG
GAAAGATAAGAAGCAGAAGAGTCGGCGCGGGTCCAATGAATGGGACGACG
AAGAGCACGAGCGGTTTGTCAAGGGTTTCGAGAGGCACGGCAAGGCGTGG
GCGGAAGTGGCGAAAGTGGTGCGGACGCGGGACGAGGGTCAGGTTCAAGC
GTACTCTTCCCGTTGGGTTACCCTTGCCGGTGGCCTTCACGAAAGCTTTC
GCAAGATTGGCGAGTGGGAAGACGACGAGCACGACCGGTTTATGGAGGCA
AGAGGGGTCAAGCTGTACGGCCGCTCGTGGGTCGATGTCGCGAGCGTGGT
GCGCACGCGAACGAACCGGCAAGTGATCATGCACGCCATGCACCGCCTGA
ACGACGACCTGTCCTCCAAGCCCAGCTTACGGGCTTGCACATCAACAGGT
GGGTGGAAGCTGGCGCCTTAG
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