EsuBft685_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft685_2a-0001
Unique Name	EsuBft685_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_233	contig	Scaffold_233:509918..510481 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4792.ETI53387
ProteomeId	EsuBft685_2
Protein domains	IPR002492
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	4776\|Peronosporales
Length	56
Hectar predicted targeting category	other localisation
Evalue	2.24e-11
EggNOG OGs	2CMKC@1\|root,2QQNW@2759\|Eukaryota,3QGXT@4776\|Peronosporales
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003677
GO	0006313
GO	0015074
GO	0004803

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft685_2a	EsuBft685_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_233 509918..510481 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft685_2a-0001-exon	EsuBft685_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_233 509918..510481 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft685_2a-0001-cds	EsuBft685_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_233 509918..510481 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft685_2a-0001	EsuBft685_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_233 509918..510481 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_233:509918..510481+
coding sequence from alignment at Scaffold_233:509918..510481+

spliced messenger RNA

>EsuBft685_2a-0001 ID=EsuBft685_2a-0001|Name=EsuBft685_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=564bp|location=Sequence derived from alignment at Scaffold_233:509918..510481+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCCGAGCTGCTCAAGGGCAGCAACAACGGGGCTTTGAGCCATGG
TGACGTGAAGAGGGTGGTGGCGATCTACAAACAGACACCCAAGACGGTGA
GCAAGTACTGGAAGCTGTACAACCAGAAGAAAGAAGCCGGGGAAGAAGAT
CCCGACCTTCACAACAAACGTAAGGGCAACAGCGGCCAGAAGGGGCTGGA
CATCGCCACTCTGAAGGAGGCGTTGCAAGACATCCACCTGAAGAACCGCA
CCACGATAAGATCGATTGCAGCCGCTTTGGGCATTCCTAAGTCAACTCTG
TTCGACAACCTCAATAATCTAGGCCTGCGATCGTGCTCAAGGTTCCTCAA
GCCGCTTCTTTCCGATGATTGGAAGGCGCAGCGGTTGGCATGGGCGTTGA
GATGGGTTCGGTCCAGCGCCGGCGATGCACACCTGGTCGGCGGGAACCCG
GCACGGAACCCTCCGGCGTTGTACGCGGGTGTGGGAAGCGTTCCCCGTCC
TGCTTTTATTTTATTTTGGTCGGTCTCCTCGACGCTCTTTCTCGTTTGGT
GCGGTAGCTGGTAG

protein sequence of EsuBft685_2a-0001

>EsuBft685_2 ID=EsuBft685_2|Name=EsuBft685_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=187bp
MVAELLKGSNNGALSHGDVKRVVAIYKQTPKTVSKYWKLYNQKKEAGEED
PDLHNKRKGNSGQKGLDIATLKEALQDIHLKNRTTIRSIAAALGIPKSTL
FDNLNNLGLRSCSRFLKPLLSDDWKAQRLAWALRWVRSSAGDAHLVGGNP
ARNPPALYAGVGSVPRPAFILFWSVSSTLFLVWCGSW

mRNA from alignment at Scaffold_233:509918..510481+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft685_2a-0001 ID=EsuBft685_2a-0001|Name=EsuBft685_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=564bp|location=Sequence derived from alignment at Scaffold_233:509918..510481+ (Ectocarpus subulatus male Bft15b)
ATGGTTGCCGAGCTGCTCAAGGGCAGCAACAACGGGGCTTTGAGCCATGG
TGACGTGAAGAGGGTGGTGGCGATCTACAAACAGACACCCAAGACGGTGA
GCAAGTACTGGAAGCTGTACAACCAGAAGAAAGAAGCCGGGGAAGAAGAT
CCCGACCTTCACAACAAACGTAAGGGCAACAGCGGCCAGAAGGGGCTGGA
CATCGCCACTCTGAAGGAGGCGTTGCAAGACATCCACCTGAAGAACCGCA
CCACGATAAGATCGATTGCAGCCGCTTTGGGCATTCCTAAGTCAACTCTG
TTCGACAACCTCAATAATCTAGGCCTGCGATCGTGCTCAAGGTTCCTCAA
GCCGCTTCTTTCCGATGATTGGAAGGCGCAGCGGTTGGCATGGGCGTTGA
GATGGGTTCGGTCCAGCGCCGGCGATGCACACCTGGTCGGCGGGAACCCG
GCACGGAACCCTCCGGCGTTGTACGCGGGTGTGGGAAGCGTTCCCCGTCC
TGCTTTTATTTTATTTTGGTCGGTCTCCTCGACGCTCTTTCTCGTTTGGT
GCGGTAGCTGGTAG

Coding sequence (CDS) from alignment at Scaffold_233:509918..510481+

>EsuBft685_2a-0001 ID=EsuBft685_2a-0001|Name=EsuBft685_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=564bp|location=Sequence derived from alignment at Scaffold_233:509918..510481+ (Ectocarpus subulatus male Bft15b)
ATGGTTGCCGAGCTGCTCAAGGGCAGCAACAACGGGGCTTTGAGCCATGG
TGACGTGAAGAGGGTGGTGGCGATCTACAAACAGACACCCAAGACGGTGA
GCAAGTACTGGAAGCTGTACAACCAGAAGAAAGAAGCCGGGGAAGAAGAT
CCCGACCTTCACAACAAACGTAAGGGCAACAGCGGCCAGAAGGGGCTGGA
CATCGCCACTCTGAAGGAGGCGTTGCAAGACATCCACCTGAAGAACCGCA
CCACGATAAGATCGATTGCAGCCGCTTTGGGCATTCCTAAGTCAACTCTG
TTCGACAACCTCAATAATCTAGGCCTGCGATCGTGCTCAAGGTTCCTCAA
GCCGCTTCTTTCCGATGATTGGAAGGCGCAGCGGTTGGCATGGGCGTTGA
GATGGGTTCGGTCCAGCGCCGGCGATGCACACCTGGTCGGCGGGAACCCG
GCACGGAACCCTCCGGCGTTGTACGCGGGTGTGGGAAGCGTTCCCCGTCC
TGCTTTTATTTTATTTTGGTCGGTCTCCTCGACGCTCTTTCTCGTTTGGT
GCGGTAGCTGGTAG