EsuBft983_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft983_8a-0001
Unique NameEsuBft983_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_233contigScaffold_233:412739..414923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7897.ENSLACP00000005771
ProteomeIdEsuBft983_8
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsPTHR19446
Protein domainsTRANSMEMBRANE
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl33208|Metazoa
Length133
Evalue2.75e-18
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BHR3@33208|Metazoa,3CUIP@33213|Bilateria,48QQZ@7711|Chordata,49MAN@7742|Vertebrata
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft983_8aEsuBft983_8aEctocarpus subulatus male Bft15bgeneScaffold_233 412739..414923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft983_8a-0001EsuBft983_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_233 412739..414808 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft983_8a-0001-exonagat-exon-1550Ectocarpus subulatus male Bft15bexonScaffold_233 412739..413203 -
EsuBft983_8a-0001-exonagat-exon-1551Ectocarpus subulatus male Bft15bexonScaffold_233 413923..414148 -
EsuBft983_8a-0001-exonagat-exon-1549Ectocarpus subulatus male Bft15bexonScaffold_233 414235..414603 -
EsuBft983_8a-0001-exonEsuBft983_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_233 414654..414923 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft983_8a-0001-cdsEsuBft983_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_233 412739..413203 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft983_8a-0001-exonagat-five_prime_utr-15493Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_233 414809..414923 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft983_8a-0001 ID=EsuBft983_8a-0001|Name=EsuBft983_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1330bp|location=Sequence derived from alignment at Scaffold_233:412739..414923- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGAAGCGCAGCACGAGGTCTCCGAAGCGTCGAAAGAGATTAAGGCGGCCC
AGCAGTAACTAACTAACAACGTGGGGGCCTCAAAGAACAGCACCTTCGAG
GCGACCCTGAAGGCGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGC
GAGGTGGAGAGCACTGGAAACGTTCTTCGAGGGCTATGTACGGCAGCTCG
AGAAGAAGAGCCGCGAGGGGGATCAGGCGGGCTTCTACAGACAGGCACCT
CAAGATGATCGACGTCGAAGGTCCTTTGGGACGTTTTTTCGCCAACGGTG
GGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACC
TGCATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGAC
GACATCCCATCTCTACTTGAGGTTGAGGAAGCGGTACGGCAAATGGCCAA
CAGAAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTT
TCCTGGACGGAGATCAAGGTCTCCTNGCCAACAGGAAGGCCGTCGGGCCG
GACGACCTACCGGCTGAGCTGATCAAACTTTTCCTGGACGGAGATCAACT
NCCAAGTCGCCGACCATCGACCTGCATGCGGCTGACAAGAAAGGCCGTCG
GGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGAT
CAAGGTCTCCTCCGCGAGTTCCACGCCATTGTCGTGGACGTGTGGCAGAC
TGGGGACGTACCACAGCAGTGGAAGGATGCCACCATCAAAGTTCTGTTCA
AGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCTCTCGTC
GCACACGCCGGCAAGATGCTGGTGTTCATTCGCCACTTCCACATNCCGAA
GATGCTGGCGGTCATTCGCCACTTCCACGAGGGCATGAGGGCGCGCGTCC
GAACGGACGACGGGCAGTACTCGGAATGGTTCGACGTGGGCCAAGGCCTC
CGACAGGGATGCAACCTGGCCCCGCTGCTGTTCAACATGTTCTTTGCCGC
GATACTCATGGTCGCCGTGGGCGAGTTCGACAAGGACCCCAAGGTGACGG
CGGAAATGGTCAAGATCGGGAAACAAGTGGAGTACACGGGCAAGAAGGGC
AGGTCGGCGGAGAAGAAGACAATGATGGTGGTGACGGACTCGGAGGCCCT
GTGGGCCATGCTCTACGTTGACGACGCGGCCATCATCTCGAGCTCGCCGG
AGAGTCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTGTTC
GGACTGATGGTATCGGAGCCAAAGACCTAG
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protein sequence of EsuBft983_8a-0001

>EsuBft983_8 ID=EsuBft983_8|Name=EsuBft983_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=404bp
MLKAARKKRSIARWRALETFFEGYVRQLEKKSREGDQAGFYRQAPQDDRR
RRSFGTFFRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSL
LEVEEAVRQMANRKAVGPDDLPAELIKLFLDGDQGLLANRKAVGPDDLPA
ELIKLFLDGDQLPSRRPSTCMRLTRKAVGPDDLPAELIKLFLDGDQGLLR
EFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGK
MLVFIRHFHXPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCN
LAPLLFNMFFAAILMVAVGEFDKDPKVTAEMVKIGKQVEYTGKKGRSAEK
KTMMVVTDSEALWAMLYVDDAAIISSSPESLEKMMSVIVRVAGLFGLMVS
EPKT
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mRNA from alignment at Scaffold_233:412739..414923-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft983_8a-0001 ID=EsuBft983_8a-0001|Name=EsuBft983_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2185bp|location=Sequence derived from alignment at Scaffold_233:412739..414923- (Ectocarpus subulatus male Bft15b)
CGAAGCGCAGCACGAGGTCTCCGAAGCGTCGAAAGAGATTAAGGCGGCCC
AGCAGTAACTAACTAACAACGTGGGGGCCTCAAAGAACAGCACCTTCGAG
GCGACCCTGAAGGCGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGC
GAGGTGGAGAGCACTGGAAACGTTCTTCGAGGGCTATGTACGGCAGCTCG
AGAAGAAGAGCCGCGAGGGGGATCAGGCGGGCTTCTACAGACAGGCACCT
CAAGATGATCGACGTCGAAGGTAAGAGGTCGTCGTTCACCTCTCAGAATA
TCAAGGACGAGGACGGCAAGGTCCTTTGGGACGTTTTTTCGCCAACGGTG
GGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACC
TGCATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGAC
GACATCCCATCTCTACTTGAGGTTGAGGAAGCGGTACGGCAAATGGCCAA
CAGAAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTT
TCCTGGACGGAGATCAAGGTCTCCTNGCCAACAGGAAGGCCGTCGGGCCG
GACGACCTACCGGCTGAGCTGATCAAACTTTTCCTGGACGGAGATCAACT
NCCAAGTCGCCGACCATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTG
GCCCACGTGCGTTCCACTCGACGAAATCCCATCGCTACTTGAGGTTGAGG
AAGCGGTACGGGAAATGGCCAACAGAAAGGCCGTCGGGCCGGACGACCTA
CCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGATCAAGGTCTCCTCCG
CGAGTTCCACGCCATTGTCGTGGACGTGTGGCAGACTGGGGACGTACCAC
AGCAGTGGAAGGATGCCACCATCAAAGTTCTGTTCAAGAAGGGGGACACG
ATGGAGTGCGGCAACTACCGGGGCATCTCTCTCGTCGCACACGCCGGCAA
GGTGCTGGTCGTCGCTACACGACTGAGCCACNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNATCCTCCCGGAGGAGCAGAGCGGTTT
CCGCCCACACCGGTCGACGCTCGACATCCAGCGGCTCCATGAGCTCGCGA
GANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCTGCGGTGTTCGCGTGCTTCGTCGACCTCACCAAGGCATACGATTCGG
TGGACCGAGACCTACTACTACTACTGTGGGACGTGCTCCGACGCTTCGGC
GTGCCCCCGAAGATAGATAGATGCTGGTGTTCATTCGCCACTTCCACATN
CCGAAGATGCTGGCGGTCATTCGCCACTTCCACGAGGGCATGAGGGCGCG
CGTCCGAACGGACGACGGGCAGTACTCGGAATGGTTCGACGTGGGCCAAG
GCCTCCGACAGGGATGCAACCTGGCCCCGCTGCTGTTCAACATGTTCTTT
GCCGCGATACTCATGGTCGCCGTGGGCGAGTTCGACAAGGACCCCAAGGT
GACGGCGGAAATGGTCAAGATCGGGAAACAAGTGGAGTACACGGGCAAGA
AGGGCAGGTCGGCGGAGAAGAAGACAATGATGGTGGTGACGGACTCGGAG
GCCCTGTGGGCCATGCTCTACGTTGACGACGCGGCCATCATCTCGAGCTC
GCCGGAGAGTCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCC
TGTTCGGACTGATGGTATCGGAGCCAAAGACCTAG
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Coding sequence (CDS) from alignment at Scaffold_233:412739..414923-

>EsuBft983_8a-0001 ID=EsuBft983_8a-0001|Name=EsuBft983_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1215bp|location=Sequence derived from alignment at Scaffold_233:412739..414923- (Ectocarpus subulatus male Bft15b)
ATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGAGAGCACT
GGAAACGTTCTTCGAGGGCTATGTACGGCAGCTCGAGAAGAAGAGCCGCG
AGGGGGATCAGGCGGGCTTCTACAGACAGGCACCTCAAGATGATCGACGT
CGAAGGTCCTTTGGGACGTTTTTTCGCCAACGGTGGGCACGGTGGTTCCA
CAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGGCTGACA
AGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCTCTA
CTTGAGGTTGAGGAAGCGGTACGGCAAATGGCCAACAGAAAGGCCGTCGG
GCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGATC
AAGGTCTCCTNGCCAACAGGAAGGCCGTCGGGCCGGACGACCTACCGGCT
GAGCTGATCAAACTTTTCCTGGACGGAGATCAACTNCCAAGTCGCCGACC
ATCGACCTGCATGCGGCTGACAAGAAAGGCCGTCGGGCCGGACGACCTAC
CGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGATCAAGGTCTCCTCCGC
GAGTTCCACGCCATTGTCGTGGACGTGTGGCAGACTGGGGACGTACCACA
GCAGTGGAAGGATGCCACCATCAAAGTTCTGTTCAAGAAGGGGGACACGA
TGGAGTGCGGCAACTACCGGGGCATCTCTCTCGTCGCACACGCCGGCAAG
ATGCTGGTGTTCATTCGCCACTTCCACATNCCGAAGATGCTGGCGGTCAT
TCGCCACTTCCACGAGGGCATGAGGGCGCGCGTCCGAACGGACGACGGGC
AGTACTCGGAATGGTTCGACGTGGGCCAAGGCCTCCGACAGGGATGCAAC
CTGGCCCCGCTGCTGTTCAACATGTTCTTTGCCGCGATACTCATGGTCGC
CGTGGGCGAGTTCGACAAGGACCCCAAGGTGACGGCGGAAATGGTCAAGA
TCGGGAAACAAGTGGAGTACACGGGCAAGAAGGGCAGGTCGGCGGAGAAG
AAGACAATGATGGTGGTGACGGACTCGGAGGCCCTGTGGGCCATGCTCTA
CGTTGACGACGCGGCCATCATCTCGAGCTCGCCGGAGAGTCTCGAGAAGA
TGATGTCGGTCATCGTGCGCGTGGCCGGCCTGTTCGGACTGATGGTATCG
GAGCCAAAGACCTAG
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