EsuBft983_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft983_2a-0001
Unique NameEsuBft983_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_233contigScaffold_233:345922..347636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft983_2
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length149
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft983_2aEsuBft983_2aEctocarpus subulatus male Bft15bgeneScaffold_233 345922..347636 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft983_2a-0001-exonagat-exon-1524Ectocarpus subulatus male Bft15bexonScaffold_233 345922..346418 +
EsuBft983_2a-0001-exonEsuBft983_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_233 346643..347636 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft983_2a-0001-exonagat-five_prime_utr-15488Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_233 345922..346137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft983_2a-0001-cdsEsuBft983_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_233 346138..346418 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft983_2a-0001-exonagat-three_prime_utr-23772Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_233 347358..347636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft983_2a-0001EsuBft983_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_233 346138..347357 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft983_2a-0001 ID=EsuBft983_2a-0001|Name=EsuBft983_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1491bp|location=Sequence derived from alignment at Scaffold_233:345922..347636+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCGTCCCCGCTTTAAAGACACTCTTCTTAAGGAAACTCCCCGCTATAAA
GACACATTATTTCCCCAGAACATGGTGCCCCGCAGATGTACAATAATATA
GGGGGGTAGCGTTTCCACTATGCGGCCCCCCAAAAAAAATTTGCTGGGGC
AGCAAATCTGTAAGGCATTGTAACATCGACAGCGGTCTGCTGCAGCCCGC
ACTACTGCGTGTGGGTATGGAGAGATTCCTCCCATCTGCTGGCGAGTCGT
CAGCTGCCGGCTTGAGGCCATGTGGCGAACCCACGTGCCAGCAAAAGTCT
CAACTCGTGTCAGCGGTTCACCAGTGCCCGTGCGGGCGATCCATGCACGC
GTTTTGTGGTCGGGGCATCGGAGAGGAAGGCTACGGACAGCAGAGAGAGT
GCTCGGATTGCCAGAAGAGCAAAGGTGGAGACCAGGCTGGCAGCAGCAGC
AGTCCCATGGAAGTGGATGCCGAAGAAAATGAGCAGGACAGCCGCAGGGG
CTGCCGGGGCCTGAGCGACGCAGGCCAGGCAACAATGCTGGATGTGACGG
AGATCCTTTCGCAGAAGTGGGAGAGCTTCTCGGACCAGACTGTTGTCAGG
TGCTGGCTCAAGGCCACCATTCTTCCTAGGGAGCACGAGAACGCGCTCAA
GGGCAGAGACACGCGGCTGGACCGAGAAGACAAGGAAGCGGCCGCCTTGG
ACGACCTTTGCGATATGGTCAAGAAGATGTCCTTGCCGGAGAGTGCCAAG
GACTTGGACGCTAGGTCCATGCCGCGAGTGTTGTCGGACAACTTGTTCGT
CGAGAGCACCTCCGGCCTCACTGAACAAGAAGTGCGGAGCGCAGTGAGCA
CGTGGCTTAGTGTAGAGGACGATGAAGAGGTCTTGAGGGAAGAGGTAGAA
CTCGAGATGGAAGAGGTAACGGAGAACATGTCAAGAGTACACGTCGAAGA
CGACGTGTCCAGTGAAGAGGAAGACCAGGACGGTAGGCAAGAGTCGTGCA
TGACATCTACGATTTCAGAGGCCGAGGTTCGCTCTCGTCTCGAGGATGTC
CGCTCCTATTTGTACGCGAACGGAAGAGACGGCGAGTACAGCGAAACGGT
GTACCTTCTTTCGAAGACTGTGCATTCGTTCACTCATGAAACTCAAGTCA
AGCGAAGAACGAAGGAGGGGGGTGAGGTGCAGGCGACTCTTCGGGATGTG
TGGGCGACGTAGTTTTTGGTGTTTGAGGACAACACACTTGGCAGCCCACA
TTCATTGTTTGGGATTTTTTTGCCTTTCTCGTGGAGTTAAATTTTGGCAT
TTTTTGTTTTGTGTTTTTGCCTCGTGTTGACCTTTGGGGAAGAGCGGTGT
TCTCTTTTCGGTGGGTTTGCCCGATTTTTTGTATGTTGTGGTCTGCGCTA
CCGACCGTTTTCTAGTGTCCCTCAGATCCCTCTGAGGGGTCGACTGGGTT
TGTTTGGTCCCTATGTGGCAGGTAACTTGCGTGTATCGTAT
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protein sequence of EsuBft983_2a-0001

>EsuBft983_2 ID=EsuBft983_2|Name=EsuBft983_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=331bp
MERFLPSAGESSAAGLRPCGEPTCQQKSQLVSAVHQCPCGRSMHAFCGRG
IGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEVDAEENEQDSRRGCRGLS
DAGQATMLDVTEILSQKWESFSDQTVVRCWLKATILPREHENALKGRDTR
LDREDKEAAALDDLCDMVKKMSLPESAKDLDARSMPRVLSDNLFVESTSG
LTEQEVRSAVSTWLSVEDDEEVLREEVELEMEEVTENMSRVHVEDDVSSE
EEDQDGRQESCMTSTISEAEVRSRLEDVRSYLYANGRDGEYSETVYLLSK
TVHSFTHETQVKRRTKEGGEVQATLRDVWAT
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mRNA from alignment at Scaffold_233:345922..347636+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft983_2a-0001 ID=EsuBft983_2a-0001|Name=EsuBft983_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1715bp|location=Sequence derived from alignment at Scaffold_233:345922..347636+ (Ectocarpus subulatus male Bft15b)
GTCGTCCCCGCTTTAAAGACACTCTTCTTAAGGAAACTCCCCGCTATAAA
GACACATTATTTCCCCAGAACATGGTGCCCCGCAGATGTACAATAATATA
GGGGGGTAGCGTTTCCACTATGCGGCCCCCCAAAAAAAATTTGCTGGGGC
AGCAAATCTGTAAGGCATTGTAACATCGACAGCGGTCTGCTGCAGCCCGC
ACTACTGCGTGTGGGTATGGAGAGATTCCTCCCATCTGCTGGCGAGTCGT
CAGCTGCCGGCTTGAGGCCATGTGGCGAACCCACGTGCCAGCAAAAGTCT
CAACTCGTGTCAGCGGTTCACCAGTGCCCGTGCGGGCGATCCATGCACGC
GTTTTGTGGTCGGGGCATCGGAGAGGAAGGCTACGGACAGCAGAGAGAGT
GCTCGGATTGCCAGAAGAGCAAAGGTGGAGACCAGGCTGGCAGCAGCAGC
AGTCCCATGGAAGTGGATGCCGAAGAAAATGAGCAGGACAGCCGCAGGTG
ATTTTTTACAGCAGTCCCGTCGGCGAAACTACGGAAGTGTGTGCGTCTGG
TCAGTACAGCAGTAGCAGTTGCTCTCTGACCAACAACGCCGCAACAGGGT
CTCCGACATAAACATGCCTGCCGTACACCACATCCAGCGAAATCCACCCT
CTCTCCTGGTGATTAAAAACTGTTGATCATTTTTTTTTTTTTACTGTGTT
CCTTGCATCTTTGTTTTGCAGGGGCTGCCGGGGCCTGAGCGACGCAGGCC
AGGCAACAATGCTGGATGTGACGGAGATCCTTTCGCAGAAGTGGGAGAGC
TTCTCGGACCAGACTGTTGTCAGGTGCTGGCTCAAGGCCACCATTCTTCC
TAGGGAGCACGAGAACGCGCTCAAGGGCAGAGACACGCGGCTGGACCGAG
AAGACAAGGAAGCGGCCGCCTTGGACGACCTTTGCGATATGGTCAAGAAG
ATGTCCTTGCCGGAGAGTGCCAAGGACTTGGACGCTAGGTCCATGCCGCG
AGTGTTGTCGGACAACTTGTTCGTCGAGAGCACCTCCGGCCTCACTGAAC
AAGAAGTGCGGAGCGCAGTGAGCACGTGGCTTAGTGTAGAGGACGATGAA
GAGGTCTTGAGGGAAGAGGTAGAACTCGAGATGGAAGAGGTAACGGAGAA
CATGTCAAGAGTACACGTCGAAGACGACGTGTCCAGTGAAGAGGAAGACC
AGGACGGTAGGCAAGAGTCGTGCATGACATCTACGATTTCAGAGGCCGAG
GTTCGCTCTCGTCTCGAGGATGTCCGCTCCTATTTGTACGCGAACGGAAG
AGACGGCGAGTACAGCGAAACGGTGTACCTTCTTTCGAAGACTGTGCATT
CGTTCACTCATGAAACTCAAGTCAAGCGAAGAACGAAGGAGGGGGGTGAG
GTGCAGGCGACTCTTCGGGATGTGTGGGCGACGTAGTTTTTGGTGTTTGA
GGACAACACACTTGGCAGCCCACATTCATTGTTTGGGATTTTTTTGCCTT
TCTCGTGGAGTTAAATTTTGGCATTTTTTGTTTTGTGTTTTTGCCTCGTG
TTGACCTTTGGGGAAGAGCGGTGTTCTCTTTTCGGTGGGTTTGCCCGATT
TTTTGTATGTTGTGGTCTGCGCTACCGACCGTTTTCTAGTGTCCCTCAGA
TCCCTCTGAGGGGTCGACTGGGTTTGTTTGGTCCCTATGTGGCAGGTAAC
TTGCGTGTATCGTAT
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Coding sequence (CDS) from alignment at Scaffold_233:345922..347636+

>EsuBft983_2a-0001 ID=EsuBft983_2a-0001|Name=EsuBft983_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=996bp|location=Sequence derived from alignment at Scaffold_233:345922..347636+ (Ectocarpus subulatus male Bft15b)
ATGGAGAGATTCCTCCCATCTGCTGGCGAGTCGTCAGCTGCCGGCTTGAG
GCCATGTGGCGAACCCACGTGCCAGCAAAAGTCTCAACTCGTGTCAGCGG
TTCACCAGTGCCCGTGCGGGCGATCCATGCACGCGTTTTGTGGTCGGGGC
ATCGGAGAGGAAGGCTACGGACAGCAGAGAGAGTGCTCGGATTGCCAGAA
GAGCAAAGGTGGAGACCAGGCTGGCAGCAGCAGCAGTCCCATGGAAGTGG
ATGCCGAAGAAAATGAGCAGGACAGCCGCAGGGGCTGCCGGGGCCTGAGC
GACGCAGGCCAGGCAACAATGCTGGATGTGACGGAGATCCTTTCGCAGAA
GTGGGAGAGCTTCTCGGACCAGACTGTTGTCAGGTGCTGGCTCAAGGCCA
CCATTCTTCCTAGGGAGCACGAGAACGCGCTCAAGGGCAGAGACACGCGG
CTGGACCGAGAAGACAAGGAAGCGGCCGCCTTGGACGACCTTTGCGATAT
GGTCAAGAAGATGTCCTTGCCGGAGAGTGCCAAGGACTTGGACGCTAGGT
CCATGCCGCGAGTGTTGTCGGACAACTTGTTCGTCGAGAGCACCTCCGGC
CTCACTGAACAAGAAGTGCGGAGCGCAGTGAGCACGTGGCTTAGTGTAGA
GGACGATGAAGAGGTCTTGAGGGAAGAGGTAGAACTCGAGATGGAAGAGG
TAACGGAGAACATGTCAAGAGTACACGTCGAAGACGACGTGTCCAGTGAA
GAGGAAGACCAGGACGGTAGGCAAGAGTCGTGCATGACATCTACGATTTC
AGAGGCCGAGGTTCGCTCTCGTCTCGAGGATGTCCGCTCCTATTTGTACG
CGAACGGAAGAGACGGCGAGTACAGCGAAACGGTGTACCTTCTTTCGAAG
ACTGTGCATTCGTTCACTCATGAAACTCAAGTCAAGCGAAGAACGAAGGA
GGGGGGTGAGGTGCAGGCGACTCTTCGGGATGTGTGGGCGACGTAG
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