Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft359_14 |
| Protein domains | PTHR32134 |
| Protein domains | G3DSA |
| Protein domains | IPR008615 |
| Protein domains | SSF52058 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | f-box and fnip repeat-containing protein l60 os:acanthamoeba polyphaga mimivirus gn:mimi [Automatic annotation] |
| Nb exon | 2 |
| Length | 3165 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | FNIP |
| Ec32 ortholog | Ec-17_003140.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft359_14a-0001 ID=EsuBft359_14a-0001|Name=EsuBft359_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3165bp|location=Sequence derived from alignment at Scaffold_233:233591..236946- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCCTTCGTCGTTGCCCTCAGCCAAGCTTGCGATGGAAAACAGTGGTAC
ACGTCGACGAAGGAACTGCAGCTGGCGTCTCTACATCCCGATTGACGTGT
TAAGCGAAGTTGAGCTCTTGCTCTTTGGGGACATCTTCAACGACAGTGTT
GACGCCGTGGCGTGGCCAAGTCAGCTGAAGAGGATAAAATTTGGGTGGTC
GTTCAACCGCCCTATCACAGAGCCCGCATGGTCCGCATCGCTGCGGCAGC
TGGAGTTCGGACGTAATTTTAACCAGGATATTGAAGTGGTAAAGTGGCCT
CCGTTGCTGCAACAGCTCATTTTCGGGGATTGCTTCAACCAGCCCATTTC
CAGTGTCGCTTGGCCGATGTCACTTCAGCATCTCTCGTTCGGTAAGAGAT
TCAACCAGCCCATTGAAGCAGTGACTTGGTCTTCTTCTCTGCTATATCTG
AGGCTTGGGATGGCCTTCAACCACCCGGTTGAAGGAGTAACGTGGAATGC
TTCACTGCAGCATCTCGTTTTCGGGTGCAACTTCAATCAACCAATCAGAG
GAGTCAAATTCCCTACTTCTCTGCAGCAGCTGTGTCTCGGGTGTTGTGAC
TTCAACCAGCCCATTGAAGGAATTGCGCTGCCAGCGTCACTGACGCATCT
CACCTTCGGGAAAGAGTTCGATCAGTGTATCGACGACGTATTATGGCCTG
GATCGCTGCAGGAGCTCACGTTTGGAAGGTCGTTCAACCAAAGCATCGTA
CCGGTCCAACTCCCTGCATCGCTTCAACAGCTTACGTTCGGTTCTGGCTA
CAAACGATGGGTCGAGGAGGTGGTCTGGCCCTCGTCGCTGCAACGCTTGG
AGTTTGGAGACGGCTTCAATATGCCCGTTGAAGACATTTCCTTGCCGGCA
TCACTGCAGCAGCTCACGTTTGGGGAATCGTTCAACAGGTGGTTACCACG
CGCTGGGTGGCCTGCTTCACTGCGCCGCGTGAAATTCGGGTACAGGTTTA
ACAAGCCGATTTCCCTCGTCTCGTGGCCATCTGCTCTGGAAGAAATGGAA
TTTGGGAGTGAATTTGACCAGCCGATTGACGAAGTGGCGCTTCCTCCCTC
ACTGCGGAGATTAAACCTCGGGCAGTCCTTCAACCGCGCAATCGAAAAAG
TTTCATGGCCTTCGTCTCTGCAGCAGATCTCGTTAGGTACCCGTTTCAAC
CAACCGATAGCACAAGTTGGTTGGCCACCATCGCTCGAGCAGATATCCTT
CGAGGGCGATTTCGGCGGGGGAGATTTCGACCAGACGATTGAAGACGTGG
CACTACCTGCCTCGCTGCGGATACTAAAACTTGGCGGTTCCTTCAACCAA
CCGATTAAAGGAGTCACGTGGCCCACGTCCTTTCAGCGGCTGGAGGTCGG
GTGGAAGTTCAACCAAGCGCTTGAAGGCATCATATGGCCAGCATCTCTGC
AGCAGTTCACCGTCTTGGGTGCATTCAATCACCCAATAGAACGAGTGAAG
TGGCCGGAATCTGTGCTGAAATTGGCGTTTGGCTACGATTTCAACCGCAG
CATACTTGGTGTCGTGTGGCCGTCGTCGCTTCACGAGCTCAAATTTGGCG
ATTACTTCAACCACAGCATTCTTGGAGTCGTGTGGCCACCATCGCTTCAG
GAGCTCGTTTTCGGTAGTGACTTCAACCAAAGCATACAGCAAGTTGCGTG
GCCAGCTTCGCTGCGGCGCCTCGAGTTTGGGTCCAACTTTAACCACAGCA
TTCGTGGAGTAGTGTGGCCGCCATCGCTGCAACGTCTGATGTTTGGCAGG
GCGTTCGACCAGAGCATTGAAGGTGTGCAATGGCCAGCGTCGCTGCAGAT
CATCGTATTTGGGGATCACTTCGACCAAGATGTGTCTGAGGTCGTGTGGC
CAAGCACATTGAAGGAGCTGCACTTTGGAGATGAGTTCAACCGACCGATG
GACAAAGCCTCTTGGCCGCCGTCTCTCCGGGTCCTTACCCTGGGAAAGCT
GTTTGATCAGTCGTTGACCCAACTAGGATCTTGGATGCCGCGTTTGTTGG
AATTGACCATTGAAGGGCATCGGTTTCACAAGCAACACTCTCTCCTTGGC
GTGCATTGGCCGGCAGGGCTTCAAAGGGTATCCGCCGAAGAGCTTTGGTA
CCCACACGGATTTCCGGAGAGTGCGGTATTTGTTGACCTGTAGTGGAAAT
GGAATAGCACTAATTTCGCAAGCAGAGCGGTGATGTGATGTCTGTAGACC
GAGCGAACTGACAGAGTTTTCTTGTGAAACGGTAGCAACTGTATGTCCAT
TTTTGGTGTTCAACCGCTGTCACGAAGAATTAGACCTGGCGTACCCGCCC
ACCCCGAGGCTTTCACGAGGACGAGCAAGTAAGCGCCTTAGGACGTTTGC
GCTTTTGAGCACACGCGAGCGGACTATTGAGTACGTGAGCAGCTCGCCAC
CGGAAACTATCAAGTAGACTTGCGCAACGACGGAAGGCAGACCAGATGGA
TCTGCGTGTTATCGCGCTCAAAGACCGATCAGTATGAGATCGGGAACGTC
CTTGTGCGAACGCGGGATTGCATCAGGGGACCACGGTCGGACGTGAGAGC
GAGCCGCGTTGCAAGTAGCCTTGTTGTGGAGCTGTTATCGTGCCACGTCG
CCCGATCCGCACCGTTGTCCTCATCCGCGACAGAGGGGAGGCAGTACATA
CGAGTCGTGAAGTGCCGCATCTCTTTCTGAGATGCGAGATGTTATCGCTG
AGCCCGGGCGAAACGAACGACATTACACGAATTTGGAGGGCTGCAGCATC
GGGGGGGTGTTTCCGAGCCAGTAACTCAAAGGAAAGGGAAGGGACTGCAA
TTCGGGTGCTTAAGAGCTGTACGCGCAGCGCAACGTGCAGGATTCGTGAC
GAGTGCCGCGACAATTAACGGGAGTAGGCCAGAGGCGAGACAGCCGGTGA
GAGAATCGATAGGGGGGAACGAAGGGTTCCTTGTAACGGGGACAGTAGTA
TGGAGTAGACCTCGGTTTGGGTGTCGAAATTCGAGTACCATTTGGGGACT
TGGTCGTTCCAGACGCCTGCATCCAGTAGCCCAGCATCTTTCTGGTACCA
GGTTAGATGCCTTGGGGTATCGTGAGTCTGGAGAAAAAAGGTTGCAACTA
CCCTCTTCCACACGC back to topprotein sequence of EsuBft359_14a-0001 >EsuBft359_14 ID=EsuBft359_14|Name=EsuBft359_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=730bp
MPSSLPSAKLAMENSGTRRRRNCSWRLYIPIDVLSEVELLLFGDIFNDSV
DAVAWPSQLKRIKFGWSFNRPITEPAWSASLRQLEFGRNFNQDIEVVKWP
PLLQQLIFGDCFNQPISSVAWPMSLQHLSFGKRFNQPIEAVTWSSSLLYL
RLGMAFNHPVEGVTWNASLQHLVFGCNFNQPIRGVKFPTSLQQLCLGCCD
FNQPIEGIALPASLTHLTFGKEFDQCIDDVLWPGSLQELTFGRSFNQSIV
PVQLPASLQQLTFGSGYKRWVEEVVWPSSLQRLEFGDGFNMPVEDISLPA
SLQQLTFGESFNRWLPRAGWPASLRRVKFGYRFNKPISLVSWPSALEEME
FGSEFDQPIDEVALPPSLRRLNLGQSFNRAIEKVSWPSSLQQISLGTRFN
QPIAQVGWPPSLEQISFEGDFGGGDFDQTIEDVALPASLRILKLGGSFNQ
PIKGVTWPTSFQRLEVGWKFNQALEGIIWPASLQQFTVLGAFNHPIERVK
WPESVLKLAFGYDFNRSILGVVWPSSLHELKFGDYFNHSILGVVWPPSLQ
ELVFGSDFNQSIQQVAWPASLRRLEFGSNFNHSIRGVVWPPSLQRLMFGR
AFDQSIEGVQWPASLQIIVFGDHFDQDVSEVVWPSTLKELHFGDEFNRPM
DKASWPPSLRVLTLGKLFDQSLTQLGSWMPRLLELTIEGHRFHKQHSLLG
VHWPAGLQRVSAEELWYPHGFPESAVFVDL back to topmRNA from alignment at Scaffold_233:233591..236946- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft359_14a-0001 ID=EsuBft359_14a-0001|Name=EsuBft359_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3356bp|location=Sequence derived from alignment at Scaffold_233:233591..236946- (Ectocarpus subulatus male Bft15b)
ATGCCTTCGTCGTTGCCCTCAGCCAAGCTTGCGATGGAAAACAGTGGTAC
ACGTCGACGAAGGAACTGCAGCTGGCGTCTCTACATGTATGTGAGGCGTG
CCGTAAAGTGACCAACCTTCACTTGCGAATCGATGACGAGATTCCGCAAC
GTCTGCTTGCGACGTTCGATGATCCTTGTACGTATCCTGAGAATGGGGGT
CCCTCTTCACGCGTGCCACGGTTCCGGGCGCATATCGCTACTTGGGATCG
TTTTTCGGTCGTGACCGAGCTCTGCAGCCCGATTGACGTGTTAAGCGAAG
TTGAGCTCTTGCTCTTTGGGGACATCTTCAACGACAGTGTTGACGCCGTG
GCGTGGCCAAGTCAGCTGAAGAGGATAAAATTTGGGTGGTCGTTCAACCG
CCCTATCACAGAGCCCGCATGGTCCGCATCGCTGCGGCAGCTGGAGTTCG
GACGTAATTTTAACCAGGATATTGAAGTGGTAAAGTGGCCTCCGTTGCTG
CAACAGCTCATTTTCGGGGATTGCTTCAACCAGCCCATTTCCAGTGTCGC
TTGGCCGATGTCACTTCAGCATCTCTCGTTCGGTAAGAGATTCAACCAGC
CCATTGAAGCAGTGACTTGGTCTTCTTCTCTGCTATATCTGAGGCTTGGG
ATGGCCTTCAACCACCCGGTTGAAGGAGTAACGTGGAATGCTTCACTGCA
GCATCTCGTTTTCGGGTGCAACTTCAATCAACCAATCAGAGGAGTCAAAT
TCCCTACTTCTCTGCAGCAGCTGTGTCTCGGGTGTTGTGACTTCAACCAG
CCCATTGAAGGAATTGCGCTGCCAGCGTCACTGACGCATCTCACCTTCGG
GAAAGAGTTCGATCAGTGTATCGACGACGTATTATGGCCTGGATCGCTGC
AGGAGCTCACGTTTGGAAGGTCGTTCAACCAAAGCATCGTACCGGTCCAA
CTCCCTGCATCGCTTCAACAGCTTACGTTCGGTTCTGGCTACAAACGATG
GGTCGAGGAGGTGGTCTGGCCCTCGTCGCTGCAACGCTTGGAGTTTGGAG
ACGGCTTCAATATGCCCGTTGAAGACATTTCCTTGCCGGCATCACTGCAG
CAGCTCACGTTTGGGGAATCGTTCAACAGGTGGTTACCACGCGCTGGGTG
GCCTGCTTCACTGCGCCGCGTGAAATTCGGGTACAGGTTTAACAAGCCGA
TTTCCCTCGTCTCGTGGCCATCTGCTCTGGAAGAAATGGAATTTGGGAGT
GAATTTGACCAGCCGATTGACGAAGTGGCGCTTCCTCCCTCACTGCGGAG
ATTAAACCTCGGGCAGTCCTTCAACCGCGCAATCGAAAAAGTTTCATGGC
CTTCGTCTCTGCAGCAGATCTCGTTAGGTACCCGTTTCAACCAACCGATA
GCACAAGTTGGTTGGCCACCATCGCTCGAGCAGATATCCTTCGAGGGCGA
TTTCGGCGGGGGAGATTTCGACCAGACGATTGAAGACGTGGCACTACCTG
CCTCGCTGCGGATACTAAAACTTGGCGGTTCCTTCAACCAACCGATTAAA
GGAGTCACGTGGCCCACGTCCTTTCAGCGGCTGGAGGTCGGGTGGAAGTT
CAACCAAGCGCTTGAAGGCATCATATGGCCAGCATCTCTGCAGCAGTTCA
CCGTCTTGGGTGCATTCAATCACCCAATAGAACGAGTGAAGTGGCCGGAA
TCTGTGCTGAAATTGGCGTTTGGCTACGATTTCAACCGCAGCATACTTGG
TGTCGTGTGGCCGTCGTCGCTTCACGAGCTCAAATTTGGCGATTACTTCA
ACCACAGCATTCTTGGAGTCGTGTGGCCACCATCGCTTCAGGAGCTCGTT
TTCGGTAGTGACTTCAACCAAAGCATACAGCAAGTTGCGTGGCCAGCTTC
GCTGCGGCGCCTCGAGTTTGGGTCCAACTTTAACCACAGCATTCGTGGAG
TAGTGTGGCCGCCATCGCTGCAACGTCTGATGTTTGGCAGGGCGTTCGAC
CAGAGCATTGAAGGTGTGCAATGGCCAGCGTCGCTGCAGATCATCGTATT
TGGGGATCACTTCGACCAAGATGTGTCTGAGGTCGTGTGGCCAAGCACAT
TGAAGGAGCTGCACTTTGGAGATGAGTTCAACCGACCGATGGACAAAGCC
TCTTGGCCGCCGTCTCTCCGGGTCCTTACCCTGGGAAAGCTGTTTGATCA
GTCGTTGACCCAACTAGGATCTTGGATGCCGCGTTTGTTGGAATTGACCA
TTGAAGGGCATCGGTTTCACAAGCAACACTCTCTCCTTGGCGTGCATTGG
CCGGCAGGGCTTCAAAGGGTATCCGCCGAAGAGCTTTGGTACCCACACGG
ATTTCCGGAGAGTGCGGTATTTGTTGACCTGTAGTGGAAATGGAATAGCA
CTAATTTCGCAAGCAGAGCGGTGATGTGATGTCTGTAGACCGAGCGAACT
GACAGAGTTTTCTTGTGAAACGGTAGCAACTGTATGTCCATTTTTGGTGT
TCAACCGCTGTCACGAAGAATTAGACCTGGCGTACCCGCCCACCCCGAGG
CTTTCACGAGGACGAGCAAGTAAGCGCCTTAGGACGTTTGCGCTTTTGAG
CACACGCGAGCGGACTATTGAGTACGTGAGCAGCTCGCCACCGGAAACTA
TCAAGTAGACTTGCGCAACGACGGAAGGCAGACCAGATGGATCTGCGTGT
TATCGCGCTCAAAGACCGATCAGTATGAGATCGGGAACGTCCTTGTGCGA
ACGCGGGATTGCATCAGGGGACCACGGTCGGACGTGAGAGCGAGCCGCGT
TGCAAGTAGCCTTGTTGTGGAGCTGTTATCGTGCCACGTCGCCCGATCCG
CACCGTTGTCCTCATCCGCGACAGAGGGGAGGCAGTACATACGAGTCGTG
AAGTGCCGCATCTCTTTCTGAGATGCGAGATGTTATCGCTGAGCCCGGGC
GAAACGAACGACATTACACGAATTTGGAGGGCTGCAGCATCGGGGGGGTG
TTTCCGAGCCAGTAACTCAAAGGAAAGGGAAGGGACTGCAATTCGGGTGC
TTAAGAGCTGTACGCGCAGCGCAACGTGCAGGATTCGTGACGAGTGCCGC
GACAATTAACGGGAGTAGGCCAGAGGCGAGACAGCCGGTGAGAGAATCGA
TAGGGGGGAACGAAGGGTTCCTTGTAACGGGGACAGTAGTATGGAGTAGA
CCTCGGTTTGGGTGTCGAAATTCGAGTACCATTTGGGGACTTGGTCGTTC
CAGACGCCTGCATCCAGTAGCCCAGCATCTTTCTGGTACCAGGTTAGATG
CCTTGGGGTATCGTGAGTCTGGAGAAAAAAGGTTGCAACTACCCTCTTCC
ACACGC back to topCoding sequence (CDS) from alignment at Scaffold_233:233591..236946- >EsuBft359_14a-0001 ID=EsuBft359_14a-0001|Name=EsuBft359_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2193bp|location=Sequence derived from alignment at Scaffold_233:233591..236946- (Ectocarpus subulatus male Bft15b)
ATGCCTTCGTCGTTGCCCTCAGCCAAGCTTGCGATGGAAAACAGTGGTAC
ACGTCGACGAAGGAACTGCAGCTGGCGTCTCTACATCCCGATTGACGTGT
TAAGCGAAGTTGAGCTCTTGCTCTTTGGGGACATCTTCAACGACAGTGTT
GACGCCGTGGCGTGGCCAAGTCAGCTGAAGAGGATAAAATTTGGGTGGTC
GTTCAACCGCCCTATCACAGAGCCCGCATGGTCCGCATCGCTGCGGCAGC
TGGAGTTCGGACGTAATTTTAACCAGGATATTGAAGTGGTAAAGTGGCCT
CCGTTGCTGCAACAGCTCATTTTCGGGGATTGCTTCAACCAGCCCATTTC
CAGTGTCGCTTGGCCGATGTCACTTCAGCATCTCTCGTTCGGTAAGAGAT
TCAACCAGCCCATTGAAGCAGTGACTTGGTCTTCTTCTCTGCTATATCTG
AGGCTTGGGATGGCCTTCAACCACCCGGTTGAAGGAGTAACGTGGAATGC
TTCACTGCAGCATCTCGTTTTCGGGTGCAACTTCAATCAACCAATCAGAG
GAGTCAAATTCCCTACTTCTCTGCAGCAGCTGTGTCTCGGGTGTTGTGAC
TTCAACCAGCCCATTGAAGGAATTGCGCTGCCAGCGTCACTGACGCATCT
CACCTTCGGGAAAGAGTTCGATCAGTGTATCGACGACGTATTATGGCCTG
GATCGCTGCAGGAGCTCACGTTTGGAAGGTCGTTCAACCAAAGCATCGTA
CCGGTCCAACTCCCTGCATCGCTTCAACAGCTTACGTTCGGTTCTGGCTA
CAAACGATGGGTCGAGGAGGTGGTCTGGCCCTCGTCGCTGCAACGCTTGG
AGTTTGGAGACGGCTTCAATATGCCCGTTGAAGACATTTCCTTGCCGGCA
TCACTGCAGCAGCTCACGTTTGGGGAATCGTTCAACAGGTGGTTACCACG
CGCTGGGTGGCCTGCTTCACTGCGCCGCGTGAAATTCGGGTACAGGTTTA
ACAAGCCGATTTCCCTCGTCTCGTGGCCATCTGCTCTGGAAGAAATGGAA
TTTGGGAGTGAATTTGACCAGCCGATTGACGAAGTGGCGCTTCCTCCCTC
ACTGCGGAGATTAAACCTCGGGCAGTCCTTCAACCGCGCAATCGAAAAAG
TTTCATGGCCTTCGTCTCTGCAGCAGATCTCGTTAGGTACCCGTTTCAAC
CAACCGATAGCACAAGTTGGTTGGCCACCATCGCTCGAGCAGATATCCTT
CGAGGGCGATTTCGGCGGGGGAGATTTCGACCAGACGATTGAAGACGTGG
CACTACCTGCCTCGCTGCGGATACTAAAACTTGGCGGTTCCTTCAACCAA
CCGATTAAAGGAGTCACGTGGCCCACGTCCTTTCAGCGGCTGGAGGTCGG
GTGGAAGTTCAACCAAGCGCTTGAAGGCATCATATGGCCAGCATCTCTGC
AGCAGTTCACCGTCTTGGGTGCATTCAATCACCCAATAGAACGAGTGAAG
TGGCCGGAATCTGTGCTGAAATTGGCGTTTGGCTACGATTTCAACCGCAG
CATACTTGGTGTCGTGTGGCCGTCGTCGCTTCACGAGCTCAAATTTGGCG
ATTACTTCAACCACAGCATTCTTGGAGTCGTGTGGCCACCATCGCTTCAG
GAGCTCGTTTTCGGTAGTGACTTCAACCAAAGCATACAGCAAGTTGCGTG
GCCAGCTTCGCTGCGGCGCCTCGAGTTTGGGTCCAACTTTAACCACAGCA
TTCGTGGAGTAGTGTGGCCGCCATCGCTGCAACGTCTGATGTTTGGCAGG
GCGTTCGACCAGAGCATTGAAGGTGTGCAATGGCCAGCGTCGCTGCAGAT
CATCGTATTTGGGGATCACTTCGACCAAGATGTGTCTGAGGTCGTGTGGC
CAAGCACATTGAAGGAGCTGCACTTTGGAGATGAGTTCAACCGACCGATG
GACAAAGCCTCTTGGCCGCCGTCTCTCCGGGTCCTTACCCTGGGAAAGCT
GTTTGATCAGTCGTTGACCCAACTAGGATCTTGGATGCCGCGTTTGTTGG
AATTGACCATTGAAGGGCATCGGTTTCACAAGCAACACTCTCTCCTTGGC
GTGCATTGGCCGGCAGGGCTTCAAAGGGTATCCGCCGAAGAGCTTTGGTA
CCCACACGGATTTCCGGAGAGTGCGGTATTTGTTGACCTGTAG back to top
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