|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 160860.XP_007357160.1 |
| ProteomeId | EsuBft359_15 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 4751|Fungi |
| Length | 134 |
| Hectar predicted targeting category | other localisation |
| Evalue | 6.3e-19 |
| EggNOG OGs | 29JY0@1|root,2RT6R@2759|Eukaryota,39VBJ@33154|Opisthokonta,3P12S@4751|Fungi,3V3WY@5204|Basidiomycota,22F53@155619|Agaricomycetes,3H41B@355688|Agaricomycetes incertae sedis |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft359_15a-0001 ID=EsuBft359_15a-0001|Name=EsuBft359_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1347bp|location=Sequence derived from alignment at Scaffold_233:225910..227256- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTGTCGGGGACGATAATCCACAACGTTGGCTTCTTCTCGGCGTCGCG
GGCACAGATCCAGGACGCGGAGGGCAACCGCAGGAAACGATGCGCCGCCT
CAGCTGCCGCGAAGCGACGGGGGGAAAACGTGAAGGTGGAGAAGTTCCGC
CCCATCGACATGCTTCATGAAGACGAGCATGGACAGTACTGGTCCTACCA
CCTCTTCGAGTACGGCAAGAACAAGGAGGAATACTGGACCGGGATCAGGA
TGCTGGACCACATGTCAGACGTGCTCGACATGTTCACAGTTCTCTACCCT
GAGCACAAGCCTGTAGGCCTGTTCGACTGGTCGTCCTGTCATGACTGCAT
GGAGGTCGGCGCACCGTCGGTGAAGAGAATGAACTTGGGTGTCGGTGGTG
TGAGGAACGGAGAAGAGCTTGCGCCGATGGACCCCGTGACCATCCTCGAA
GATACCCCGAACCTCCCAGCCGGCACGGTACAGCACTTGGTGTTTCGGAG
GGGGGACGATCCCCCCTTCCACTCCCCGCATCTCAAGCAGGCGCAATATG
TCGGAAAGTTGAACGGAATGCGGCAGATTTTGTGGGACAGGGGGCTCCTG
GTCAAAGGCATGAGTAAGACGGGGGGCTCGGGCGAAAAGCAGGACCTCAG
CAAGAGCATGGAGCACGTTTTGGGAGAGCAGAAGGACTTCAAGGAAGTTG
ATTCTAGTCTGGTGCTGTTGATGCAGCGCCACGGGGGGGCCTGTCTCATG
CTTCCTAAGTATCACTGCGAGTGTAACCCCATCGAGCTTGTTTTGGGCCG
AGCGAAGGACTGGACTCGAAAGAACTGCAAATTTTCGTTGGAATGCTTGC
GCAAGAACGTGCCGCTGAGTTTTAGACCAGAGAGGGATAGACAGGCTGTT
TCAGTAGTCCAGGGCTATTGCAAGAAGGCGTACACACACGCCCTCGTGTA
CCGCGAGACGCGTGTGCAAGGGTCTGAGGGCAAGAAGACGTACAAGAAGT
ACAAGTCGCACAGGCGCCCGACCCCGAAGGAATGGAGGCCGTAGAGTCGA
TGGCGCATTCTTGTTCATTGAGCTGTATTTGTTCAGTTTTTTTCCGTGTT
TCTGGTGGGAATGTTGTACAAAAATGGAACATTTTTGTTGAAAACGGCCA
ATTTTTGTGATGTATGTACGCTAAGGTGCGGTAGAGGCAATTGCATAGTG
TTTGAGGGCGTTCCTGTGCACGTGTGGGTGGTTTGGTGCGAAAAAAAAAA
AAGGATTAGCAACATTTATGGGGGAAAAGTTGCTCTATTTAGGGCTAATT
TCGTGGGTTCGAGACCCGCCGCGAGCATCTGCTTTTTTTTTCTCTTT back to topprotein sequence of EsuBft359_15a-0001 >EsuBft359_15 ID=EsuBft359_15|Name=EsuBft359_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=347bp
MVSGTIIHNVGFFSASRAQIQDAEGNRRKRCAASAAAKRRGENVKVEKFR
PIDMLHEDEHGQYWSYHLFEYGKNKEEYWTGIRMLDHMSDVLDMFTVLYP
EHKPVGLFDWSSCHDCMEVGAPSVKRMNLGVGGVRNGEELAPMDPVTILE
DTPNLPAGTVQHLVFRRGDDPPFHSPHLKQAQYVGKLNGMRQILWDRGLL
VKGMSKTGGSGEKQDLSKSMEHVLGEQKDFKEVDSSLVLLMQRHGGACLM
LPKYHCECNPIELVLGRAKDWTRKNCKFSLECLRKNVPLSFRPERDRQAV
SVVQGYCKKAYTHALVYRETRVQGSEGKKTYKKYKSHRRPTPKEWRP back to topmRNA from alignment at Scaffold_233:225910..227256- Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft359_15a-0001 ID=EsuBft359_15a-0001|Name=EsuBft359_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1347bp|location=Sequence derived from alignment at Scaffold_233:225910..227256- (Ectocarpus subulatus male Bft15b)
ATGGTGTCGGGGACGATAATCCACAACGTTGGCTTCTTCTCGGCGTCGCG
GGCACAGATCCAGGACGCGGAGGGCAACCGCAGGAAACGATGCGCCGCCT
CAGCTGCCGCGAAGCGACGGGGGGAAAACGTGAAGGTGGAGAAGTTCCGC
CCCATCGACATGCTTCATGAAGACGAGCATGGACAGTACTGGTCCTACCA
CCTCTTCGAGTACGGCAAGAACAAGGAGGAATACTGGACCGGGATCAGGA
TGCTGGACCACATGTCAGACGTGCTCGACATGTTCACAGTTCTCTACCCT
GAGCACAAGCCTGTAGGCCTGTTCGACTGGTCGTCCTGTCATGACTGCAT
GGAGGTCGGCGCACCGTCGGTGAAGAGAATGAACTTGGGTGTCGGTGGTG
TGAGGAACGGAGAAGAGCTTGCGCCGATGGACCCCGTGACCATCCTCGAA
GATACCCCGAACCTCCCAGCCGGCACGGTACAGCACTTGGTGTTTCGGAG
GGGGGACGATCCCCCCTTCCACTCCCCGCATCTCAAGCAGGCGCAATATG
TCGGAAAGTTGAACGGAATGCGGCAGATTTTGTGGGACAGGGGGCTCCTG
GTCAAAGGCATGAGTAAGACGGGGGGCTCGGGCGAAAAGCAGGACCTCAG
CAAGAGCATGGAGCACGTTTTGGGAGAGCAGAAGGACTTCAAGGAAGTTG
ATTCTAGTCTGGTGCTGTTGATGCAGCGCCACGGGGGGGCCTGTCTCATG
CTTCCTAAGTATCACTGCGAGTGTAACCCCATCGAGCTTGTTTTGGGCCG
AGCGAAGGACTGGACTCGAAAGAACTGCAAATTTTCGTTGGAATGCTTGC
GCAAGAACGTGCCGCTGAGTTTTAGACCAGAGAGGGATAGACAGGCTGTT
TCAGTAGTCCAGGGCTATTGCAAGAAGGCGTACACACACGCCCTCGTGTA
CCGCGAGACGCGTGTGCAAGGGTCTGAGGGCAAGAAGACGTACAAGAAGT
ACAAGTCGCACAGGCGCCCGACCCCGAAGGAATGGAGGCCGTAGAGTCGA
TGGCGCATTCTTGTTCATTGAGCTGTATTTGTTCAGTTTTTTTCCGTGTT
TCTGGTGGGAATGTTGTACAAAAATGGAACATTTTTGTTGAAAACGGCCA
ATTTTTGTGATGTATGTACGCTAAGGTGCGGTAGAGGCAATTGCATAGTG
TTTGAGGGCGTTCCTGTGCACGTGTGGGTGGTTTGGTGCGAAAAAAAAAA
AAGGATTAGCAACATTTATGGGGGAAAAGTTGCTCTATTTAGGGCTAATT
TCGTGGGTTCGAGACCCGCCGCGAGCATCTGCTTTTTTTTTCTCTTT back to topCoding sequence (CDS) from alignment at Scaffold_233:225910..227256- >EsuBft359_15a-0001 ID=EsuBft359_15a-0001|Name=EsuBft359_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1044bp|location=Sequence derived from alignment at Scaffold_233:225910..227256- (Ectocarpus subulatus male Bft15b)
ATGGTGTCGGGGACGATAATCCACAACGTTGGCTTCTTCTCGGCGTCGCG
GGCACAGATCCAGGACGCGGAGGGCAACCGCAGGAAACGATGCGCCGCCT
CAGCTGCCGCGAAGCGACGGGGGGAAAACGTGAAGGTGGAGAAGTTCCGC
CCCATCGACATGCTTCATGAAGACGAGCATGGACAGTACTGGTCCTACCA
CCTCTTCGAGTACGGCAAGAACAAGGAGGAATACTGGACCGGGATCAGGA
TGCTGGACCACATGTCAGACGTGCTCGACATGTTCACAGTTCTCTACCCT
GAGCACAAGCCTGTAGGCCTGTTCGACTGGTCGTCCTGTCATGACTGCAT
GGAGGTCGGCGCACCGTCGGTGAAGAGAATGAACTTGGGTGTCGGTGGTG
TGAGGAACGGAGAAGAGCTTGCGCCGATGGACCCCGTGACCATCCTCGAA
GATACCCCGAACCTCCCAGCCGGCACGGTACAGCACTTGGTGTTTCGGAG
GGGGGACGATCCCCCCTTCCACTCCCCGCATCTCAAGCAGGCGCAATATG
TCGGAAAGTTGAACGGAATGCGGCAGATTTTGTGGGACAGGGGGCTCCTG
GTCAAAGGCATGAGTAAGACGGGGGGCTCGGGCGAAAAGCAGGACCTCAG
CAAGAGCATGGAGCACGTTTTGGGAGAGCAGAAGGACTTCAAGGAAGTTG
ATTCTAGTCTGGTGCTGTTGATGCAGCGCCACGGGGGGGCCTGTCTCATG
CTTCCTAAGTATCACTGCGAGTGTAACCCCATCGAGCTTGTTTTGGGCCG
AGCGAAGGACTGGACTCGAAAGAACTGCAAATTTTCGTTGGAATGCTTGC
GCAAGAACGTGCCGCTGAGTTTTAGACCAGAGAGGGATAGACAGGCTGTT
TCAGTAGTCCAGGGCTATTGCAAGAAGGCGTACACACACGCCCTCGTGTA
CCGCGAGACGCGTGTGCAAGGGTCTGAGGGCAAGAAGACGTACAAGAAGT
ACAAGTCGCACAGGCGCCCGACCCCGAAGGAATGGAGGCCGTAG back to top
|