EsuBft923_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft923_3a-0001
Unique Name	EsuBft923_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_230	contig	Scaffold_230:150917..152173 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft923_3
Protein domains	PTHR32134
Protein domains	SSF52058
Protein domains	IPR008615
Owner	apollo_admin@sb-roscoff.fr
Note	f-box and fnip repeat-containing protein l60 os:acanthamoeba polyphaga mimivirus gn:mimi [Automatic annotation]
Nb exon	1
Length	1257
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft923_3a	EsuBft923_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_230 150917..152173 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft923_3a-0001-exon	EsuBft923_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_230 150917..152173 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft923_3a-0001-cds	EsuBft923_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_230 150917..152173 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft923_3a-0001	EsuBft923_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_230 150917..152173 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_230:150917..152173-
coding sequence from alignment at Scaffold_230:150917..152173-

spliced messenger RNA

>EsuBft923_3a-0001 ID=EsuBft923_3a-0001|Name=EsuBft923_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1257bp|location=Sequence derived from alignment at Scaffold_230:150917..152173- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCGGCCCTCACGATCGTGAGGTCGACCATGGACCTCCAATGCTC
GCCATTGACGCTCAACGAGGCGTGCCGGCGCGCACCGACTTTGGTGGTGA
TGGTTGTTGGAGACTATATGCCACTCAAACGCCTGGCTGGAAGCAAGAAG
AACCACGAGGCCGGAGTGCCCCCGGCTACGGCCGGTGACATGATGACCGG
GCCAGGCCTCATGCCGGAGTCAAAAAGGGTACCTCAAATCCTTCCGCACG
GTTTGGTGTGGTGCCTGCCCCTGGAGGCGTTCGGGCAGGGTGACGTTGAC
CTCCCAGTTGTGCGTAACCTGCGACTCACCGAGGCAGCCAACCTGCCGGA
TGACCTGAAGTTGCCGCTGTCCATTGAGCACCTGGACGTTGGGGACGAGT
TCGACCACTCCATCGTTGGAGTGGAGTGGCCGGCAGCCCTGAAGCGGCTC
GACTTCGGTATTGCTTTCGACCAATCCATCGTCCAAGTCGCGTGGCCAGC
CTCCTCGCTGCGCCTCCAGTTCGTTTGTCATTTCAATCAACCGCTCGCCG
AGGGCGCGTGGCCGGACTCGTTGCTGCAGATCGAGTTCGAGTATGCGTTT
AACCAGTCAATCGCAGTCGACTGGCCAGCATCGTTGTGCGAGCTAACCTT
GGGGTCGAACTTCGACCAACCAATTTCCGGCGTCACGTGGCCGCCTTCGC
TACACCGGTTCCAGTTCGATGGATATTTCGACCAATCGCTCTTGGAGGTT
GTGTGGCCACCCACACTGCAGCGCCTCCAATTCGGATACGGCTTCAACAA
GCCTATCGCCGGAGTCGCCTGGCCGTCTTCATTGCAGCGCCTCCAGTTCG
GCAGTTATTTCAACCAACCGCTGGTGGAGGTTGCCTGGCGGGCCTCACTG
CTGAAACTCCAGTTCGGGGAATTCTTCAATCAGCCCCTCGCCGGAGTCAC
ATGGCCCTTGTCGCTGCAAGACCTAGAGTTCAATGTTGAATTCAATCAGC
GCCTCACCGGAGTCGTGTGGCCGCCTTTCCTGAAGCGGCTCAAGTTCGGT
TTCTACTTCAACCATCCAATAATCGGAATCGGATGGCCTTCATCCCTACA
GCACCTAGCTTTCGGTGGGGGATTCCACCAGTCAATCGAACGAGTTGTGT
GGCCGCGCTCGGCCCTTGCTCTGAAGATGGCCATTTGGGATGAGTGGCCG
CCCTCGGCACCAGCTCTGTTTTTTAACGGCGAGATTCTTCGCGTACCAGA
AACTTAG

protein sequence of EsuBft923_3a-0001

>EsuBft923_3 ID=EsuBft923_3|Name=EsuBft923_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=418bp
MEAALTIVRSTMDLQCSPLTLNEACRRAPTLVVMVVGDYMPLKRLAGSKK
NHEAGVPPATAGDMMTGPGLMPESKRVPQILPHGLVWCLPLEAFGQGDVD
LPVVRNLRLTEAANLPDDLKLPLSIEHLDVGDEFDHSIVGVEWPAALKRL
DFGIAFDQSIVQVAWPASSLRLQFVCHFNQPLAEGAWPDSLLQIEFEYAF
NQSIAVDWPASLCELTLGSNFDQPISGVTWPPSLHRFQFDGYFDQSLLEV
VWPPTLQRLQFGYGFNKPIAGVAWPSSLQRLQFGSYFNQPLVEVAWRASL
LKLQFGEFFNQPLAGVTWPLSLQDLEFNVEFNQRLTGVVWPPFLKRLKFG
FYFNHPIIGIGWPSSLQHLAFGGGFHQSIERVVWPRSALALKMAIWDEWP
PSAPALFFNGEILRVPET

mRNA from alignment at Scaffold_230:150917..152173-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft923_3a-0001 ID=EsuBft923_3a-0001|Name=EsuBft923_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1257bp|location=Sequence derived from alignment at Scaffold_230:150917..152173- (Ectocarpus subulatus male Bft15b)
ATGGAGGCGGCCCTCACGATCGTGAGGTCGACCATGGACCTCCAATGCTC
GCCATTGACGCTCAACGAGGCGTGCCGGCGCGCACCGACTTTGGTGGTGA
TGGTTGTTGGAGACTATATGCCACTCAAACGCCTGGCTGGAAGCAAGAAG
AACCACGAGGCCGGAGTGCCCCCGGCTACGGCCGGTGACATGATGACCGG
GCCAGGCCTCATGCCGGAGTCAAAAAGGGTACCTCAAATCCTTCCGCACG
GTTTGGTGTGGTGCCTGCCCCTGGAGGCGTTCGGGCAGGGTGACGTTGAC
CTCCCAGTTGTGCGTAACCTGCGACTCACCGAGGCAGCCAACCTGCCGGA
TGACCTGAAGTTGCCGCTGTCCATTGAGCACCTGGACGTTGGGGACGAGT
TCGACCACTCCATCGTTGGAGTGGAGTGGCCGGCAGCCCTGAAGCGGCTC
GACTTCGGTATTGCTTTCGACCAATCCATCGTCCAAGTCGCGTGGCCAGC
CTCCTCGCTGCGCCTCCAGTTCGTTTGTCATTTCAATCAACCGCTCGCCG
AGGGCGCGTGGCCGGACTCGTTGCTGCAGATCGAGTTCGAGTATGCGTTT
AACCAGTCAATCGCAGTCGACTGGCCAGCATCGTTGTGCGAGCTAACCTT
GGGGTCGAACTTCGACCAACCAATTTCCGGCGTCACGTGGCCGCCTTCGC
TACACCGGTTCCAGTTCGATGGATATTTCGACCAATCGCTCTTGGAGGTT
GTGTGGCCACCCACACTGCAGCGCCTCCAATTCGGATACGGCTTCAACAA
GCCTATCGCCGGAGTCGCCTGGCCGTCTTCATTGCAGCGCCTCCAGTTCG
GCAGTTATTTCAACCAACCGCTGGTGGAGGTTGCCTGGCGGGCCTCACTG
CTGAAACTCCAGTTCGGGGAATTCTTCAATCAGCCCCTCGCCGGAGTCAC
ATGGCCCTTGTCGCTGCAAGACCTAGAGTTCAATGTTGAATTCAATCAGC
GCCTCACCGGAGTCGTGTGGCCGCCTTTCCTGAAGCGGCTCAAGTTCGGT
TTCTACTTCAACCATCCAATAATCGGAATCGGATGGCCTTCATCCCTACA
GCACCTAGCTTTCGGTGGGGGATTCCACCAGTCAATCGAACGAGTTGTGT
GGCCGCGCTCGGCCCTTGCTCTGAAGATGGCCATTTGGGATGAGTGGCCG
CCCTCGGCACCAGCTCTGTTTTTTAACGGCGAGATTCTTCGCGTACCAGA
AACTTAG

Coding sequence (CDS) from alignment at Scaffold_230:150917..152173-

>EsuBft923_3a-0001 ID=EsuBft923_3a-0001|Name=EsuBft923_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1257bp|location=Sequence derived from alignment at Scaffold_230:150917..152173- (Ectocarpus subulatus male Bft15b)
ATGGAGGCGGCCCTCACGATCGTGAGGTCGACCATGGACCTCCAATGCTC
GCCATTGACGCTCAACGAGGCGTGCCGGCGCGCACCGACTTTGGTGGTGA
TGGTTGTTGGAGACTATATGCCACTCAAACGCCTGGCTGGAAGCAAGAAG
AACCACGAGGCCGGAGTGCCCCCGGCTACGGCCGGTGACATGATGACCGG
GCCAGGCCTCATGCCGGAGTCAAAAAGGGTACCTCAAATCCTTCCGCACG
GTTTGGTGTGGTGCCTGCCCCTGGAGGCGTTCGGGCAGGGTGACGTTGAC
CTCCCAGTTGTGCGTAACCTGCGACTCACCGAGGCAGCCAACCTGCCGGA
TGACCTGAAGTTGCCGCTGTCCATTGAGCACCTGGACGTTGGGGACGAGT
TCGACCACTCCATCGTTGGAGTGGAGTGGCCGGCAGCCCTGAAGCGGCTC
GACTTCGGTATTGCTTTCGACCAATCCATCGTCCAAGTCGCGTGGCCAGC
CTCCTCGCTGCGCCTCCAGTTCGTTTGTCATTTCAATCAACCGCTCGCCG
AGGGCGCGTGGCCGGACTCGTTGCTGCAGATCGAGTTCGAGTATGCGTTT
AACCAGTCAATCGCAGTCGACTGGCCAGCATCGTTGTGCGAGCTAACCTT
GGGGTCGAACTTCGACCAACCAATTTCCGGCGTCACGTGGCCGCCTTCGC
TACACCGGTTCCAGTTCGATGGATATTTCGACCAATCGCTCTTGGAGGTT
GTGTGGCCACCCACACTGCAGCGCCTCCAATTCGGATACGGCTTCAACAA
GCCTATCGCCGGAGTCGCCTGGCCGTCTTCATTGCAGCGCCTCCAGTTCG
GCAGTTATTTCAACCAACCGCTGGTGGAGGTTGCCTGGCGGGCCTCACTG
CTGAAACTCCAGTTCGGGGAATTCTTCAATCAGCCCCTCGCCGGAGTCAC
ATGGCCCTTGTCGCTGCAAGACCTAGAGTTCAATGTTGAATTCAATCAGC
GCCTCACCGGAGTCGTGTGGCCGCCTTTCCTGAAGCGGCTCAAGTTCGGT
TTCTACTTCAACCATCCAATAATCGGAATCGGATGGCCTTCATCCCTACA
GCACCTAGCTTTCGGTGGGGGATTCCACCAGTCAATCGAACGAGTTGTGT
GGCCGCGCTCGGCCCTTGCTCTGAAGATGGCCATTTGGGATGAGTGGCCG
CCCTCGGCACCAGCTCTGTTTTTTAACGGCGAGATTCTTCGCGTACCAGA
AACTTAG