EsuBft144_24a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft144_24a-0001
Unique NameEsuBft144_24a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:398851..402944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G8L4
ProteomeIdEsuBft144_24
Protein domainsPTHR22847
Protein domainsIPR017986
Protein domainsIPR001680
Protein domainsIPR015943
Ownerapollo_admin@sb-roscoff.fr
Noteuncharacterized wd repeat-containing protein alr2800 os:nostoc (strain pcc 7120 utex 2576) gn:a [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1376
Hectar predicted targeting categoryother localisation
Evalue1.97e-127
EggNOG OGs28N03@1|root,2S80F@2759|Eukaryota
Ec32 ortholog descriptionQuinonprotein alcohol dehydrogenase-like superfamily
Ec32 orthologEc-00_010930.2
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K14963
KEGG Pathwayko04934,map04934
DescriptionWD40 repeats
COG categoryS
BRITEko00000,ko00001,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft144_24aEsuBft144_24aEctocarpus subulatus male Bft15bgeneScaffold_228 398851..402944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_24a-0001EsuBft144_24Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 399396..402923 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_24a-0001-exonagat-exon-9090Ectocarpus subulatus male Bft15bexonScaffold_228 398851..399519 -
EsuBft144_24a-0001-exonEsuBft144_24a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 399793..399957 -
EsuBft144_24a-0001-exonagat-exon-9088Ectocarpus subulatus male Bft15bexonScaffold_228 400907..401013 -
EsuBft144_24a-0001-exonagat-exon-9089Ectocarpus subulatus male Bft15bexonScaffold_228 401270..401410 -
EsuBft144_24a-0001-exonagat-exon-9092Ectocarpus subulatus male Bft15bexonScaffold_228 401848..401971 -
EsuBft144_24a-0001-exonagat-exon-9091Ectocarpus subulatus male Bft15bexonScaffold_228 402775..402944 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_24a-0001-exonagat-three_prime_utr-3970Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 398851..399395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_24a-0001-cdsEsuBft144_24a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 399396..399519 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_24a-0001-exonagat-five_prime_utr-2613Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_228 402924..402944 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft144_24a-0001 ID=EsuBft144_24a-0001|Name=EsuBft144_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1376bp|location=Sequence derived from alignment at Scaffold_228:398851..402944- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCCTACTTCTAGCGGGCGGCATGGACGGGAGTAGTCACCTCGTCTCCAT
CGATGGCGGCCACGGTGGTGATGCCGGTGATGGTAGCGACGGTGATGATG
GCGAGGAGACGAACGGGGTGGCGTTGTTGGCCTCCATGAAGAACCACGCC
AAATACGTCGTCGTTTGCAGGTGGGCACCTGACGGCAGAGCTTTCGTGAC
GGCCTCCCACGACAAGGTGGTGACCCTGTACACCTTGAGGGGCGGGGGGG
ACGGGACGGGGCAGGGCGGCGTCGGCGGCACGGGTTTTGAGCAGGCGACC
CAGCTGTATTTTCCCGAGGCGGTAGAGAGCGTGGAGTTCGTAAGGGGAGA
AGGCGGTGCGCTGGAGCTGGTGGTGTCGGCCAGGGCGCAGCCGCACCTCA
CGTACGTCAACATCGAGACCCTCCAACAGCGCCGAGTGAGCCTGAACGAG
AAGGAGTGGGATACCCACGTGTCCTTCACGGTGATGTCCATGGCGGCCTC
TGGGGACGGGAAGTACCTCCTCGCCGCCACCGACAAAAGCAGAAACATCC
TCTGGCGGGCGGGAAGCAACGCCCGGGTCCGCACCCTGATGGGCCACACG
ACGGACGACTACTTCCAGCCGCGGGTGCAGTGGGACCCCTCCGGACTGTT
CTCCTACTGCAACAGCTCTGGGGATCACGACGTTCACGTTCACTGCCTAG
CCTCCGGCCGCGCCGTGGAGCAGCTCAAGGGGCACCGTGCCGTCATACGT
GACATCCACCACGACCCTTCTAGAAGAGTTCTCGTTACGGCTTCCTACGA
CAAGACTGTCAAAGTCTGGGGGGAGAGATGAGGGGTCGGCTCTAGCGAGA
ACGGCAGTTATCTTGGGGGGGGGAATATCGATGAAGACTGCTCAAGATGG
CGGAAACTTTATCGTACGTGCACGCCGGATGTCGCCTTAGCTACCGAAGA
TTCGCTTTGGGGTCACGGGGCTCGTGTGCAAGGAATAATAAGAACACCTT
TCGACATGTTCATGTGTGGACTCGTTGTAAGATTGTTTTCACCCCGAAGT
TGTGCGAGCCAAGAGAAACCACTGAGACACAATGGCTACGGTTCTTTCCC
TCCCCCGGAATACTCACGACCCCTGTGCTAGATAGGGTGGGTAATGAGCC
GCGGGTGACGACTCAATAACTCGCAGTAGTCTATCTGCGATGCTGTGCGA
TGTTGTTGTTCCGATCATGGAAGTGCAGCAGAAGGAGGAGCCCCGCTCAC
AACAGAGAGAAAAGGAGCGCGCAGGATTGGTTGGTGGTTTGGAGTGTTGG
GAGTGTGGGATATGCAGGCTTGTGCGACGAGGAAAATGAGCAGCGCTTGT
TTGTACACATAGACTACATGTTGCAT
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protein sequence of EsuBft144_24a-0001

>EsuBft144_24 ID=EsuBft144_24|Name=EsuBft144_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=269bp
MDGSSHLVSIDGGHGGDAGDGSDGDDGEETNGVALLASMKNHAKYVVVCR
WAPDGRAFVTASHDKVVTLYTLRGGGDGTGQGGVGGTGFEQATQLYFPEA
VESVEFVRGEGGALELVVSARAQPHLTYVNIETLQQRRVSLNEKEWDTHV
SFTVMSMAASGDGKYLLAATDKSRNILWRAGSNARVRTLMGHTTDDYFQP
RVQWDPSGLFSYCNSSGDHDVHVHCLASGRAVEQLKGHRAVIRDIHHDPS
RRVLVTASYDKTVKVWGER
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mRNA from alignment at Scaffold_228:398851..402944-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft144_24a-0001 ID=EsuBft144_24a-0001|Name=EsuBft144_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4094bp|location=Sequence derived from alignment at Scaffold_228:398851..402944- (Ectocarpus subulatus male Bft15b)
TGCCTACTTCTAGCGGGCGGCATGGACGGGAGTAGTCACCTCGTCTCCAT
CGATGGCGGCCACGGTGGTGATGCCGGTGATGGTAGCGACGGTGATGATG
GCGAGGAGACGAACGGGGTGGCGTTGTTGGCCTCCATGAAGAACCACGCC
AAATACGTCGTCGTTTGCAGGTACAGTACTTCCCGTAGAACGTTTGGGGA
AGAGCGGCAATCAGGTGTTGCCGCCGTGGCATAAGATGCGCGTTTTTCTG
TGTTTCACTAGCTTCGAAGGGAAGCGCTGTAGCCAACGGGGTAAATAACC
GCCGCCACCCTGCTTACCTCCTAAAGGGGTTCCTCGGGGTTGTAGGAAAT
TTCCAGGAACACTCCCCGTCAACCATTCCTTTCGACCAAGTCATGAGAAC
CCCACTCGTTGTGTTGGGATTATGTGTTTTTGGCCTCCCTTCGAGTACTT
GTGTGTTTGTCTCTCGAGTATGCTCGTACCTCGCCGTTTGCCTGTTTGTG
TTGAGGTTCACAACATGCCTGACACATGCTGCAGCACGCAAACGATCATT
CTTCCACCAGCTTACCATCCGTGTTAAAGATATCATCGAAGAATCAGGAC
CGACAAGTGACGGCGCCAGCAACAGGTTTAGCCGCCCACGTGCGAGCCTC
CCCGTGCCCTCTCCACCACCTAATTTTCCCCAACAACACCACCCCCACTT
CTCAGCCCCCCCGCTTCGCCTCTATGCCCCCCCCCCCCCCCCCCCCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCGTCA
TTTTCCATCTCGCCCGCGCCCCGAGCTCTGCATTCTAATAATTTCTTTTC
CTCTGCGCCCCATATAACTTTTTGCAACATCCCGGCGCCTAAAATCTCCC
CGCCCCCACCCCCCCTATCCTAGGTGGGCACCTGACGGCAGAGCTTTCGT
GACGGCCTCCCACGACAAGGTGGTGACCCTGTACACCTTGAGGGGCGGGG
GGGACGGGACGGGGCAGGGCGGCGTCGGCGGCACGGGTTTTGAGCAGGTG
CACGTCGTGGGTGGGGGTGGGGAACGACACACGACAGCGGTACTGAGTAT
TATTCGGTCATTCGAGTGTTGAATATTTTGTCGTTGATTTCTCTCTGTCT
CTGTCTGTGTCTCTTTCGCTTTCTCCTTCTCTCGATTCGGTTCGCAGCGG
GCGTGACGCGACACCGGAGAGATACAACCTTGCTTGCCGAAATGTGAAAC
GGATGGTTAGCGGGGATGGCCAACCGATCAACCTCATGGCATATCTATTT
GGCTAGAGCAAAACGCAAGGGTGATGGTCAGCTTCGTGTGGCTAATCCTT
GTGGAACGTAGCCCGAGCTGGCGAAAAAACGGCATATCGCTCCGTCCCGG
CATTGTAGGGATGCGAGGTCGACATGGCTTACCGACTACGGCGTGCGTGT
ACATGAGTGCACCACCTCCAAATGCCTTGTGCAGGCGACCCAGCTGTATT
TTCCCGAGGCGGTAGAGAGCGTGGAGTTCGTAAGGGGAGAAGGCGGTGCG
CTGGAGCTGGTGGTGTCGGCCAGGGCGCAGCCGCACCTCACGTACGTCAA
CATCGAGACCCTCCAACAGCGCCGAGTGAGTGGTTACAGCGTAGCGCACG
TGTATGTGTGTGCGGATACCACTCAATCTTTTTTGGTCCTGTGGTAGTGC
TTGGCGTCTGCTGTCGCTGCCCTCGGAGCAGACGTTCTCGTGGTGGTGGC
GGGGGGGGGGGCGCTGTCATCTCCAAGGGGTAGTCGAAAGGGTTGTCACG
AAACCCGGACCCGCTTTTTTTTCCTCAGGCGTTTTCTCTGGATCCCGCCT
ATACGTGTGTTGAAAACCCAAACCTACAAAGGTGAGCCTGAACGAGAAGG
AGTGGGATACCCACGTGTCCTTCACGGTGATGTCCATGGCGGCCTCTGGG
GACGGGAAGTACCTCCTCGCCGCCACCGACAAAAGCAGGTACAACTACCA
CAGCATGATTCTCGAGCCTTTTTTCACCACCAGTCCGTATGGCGAGAACT
TTGCGATCTGAATTTTGGCGGCCATGGACAAGCCAGTCAGAGTGGTACGC
AGAAACCTTCGGCGAAGATGGATTCAAGAGTATCGGAAGTGATCTGTGTA
CCAGGCAATTGTTTGTGTTACTTGCGTTGTATCTCACAGAGAGAGAGAGA
GAGTGAGGGGAGAGAGAGAGAGACGGACAAAAGGAAGCGCTTGTGGCATG
TTTTTCCTTGTGGCATCTATCACCCACACAACAACACACTATCTGATTGT
ACCGGTCTACAAGGCAGGGCGGGTCTTTGCTGTAAAACTGCCGTTGAAGA
AAAAGATGGGTACATCTATGTCATTCTGCTACTAGCCAGGTCATGCTTGT
ACAGTGTGGCGGGTTCTCACTCAGGATGTGAACCAAATTTTGGTCGTTGT
GAGAGACTGGCGCTTTTTGTTGTTGTTGCTGCTGCTGCTGGTGTTACCGC
CTCTGCTATGACACATTTGCCTGACCGTTTCGCCTTCAGTTGATAACATC
CGCCTTTATTTTGGTCCCCGTCCCTCGTAAGAATAATTACTTCTCGCGGC
TGCCGCAAAATGCAAGCAGCAAGACAAGGGCAAGAGCTGCCTGCTTGTAA
CCAGAAGCGCAAGTTTTTTTTTTGTGTGATCCCGTCGGGGCTGACGTCAC
TCTTTCGGGTCCGCAGATTACCGCGGCCGTTGCCGACCAATGAATGCACT
TCTGGTCATACGTCATACGTGCCACATGAGACAGGGATTCGCGTGTTGTC
ATCAGTGGTCAGTCTGTGTGATTGTGAGCGATCGACTCAGGTTTTTCCTC
TCTGGAAACGTTTTTCCGGCGATCGACGCGCGTGACGCTTGTTTCATGCT
TCTTCGCGGCTACACCCACTCATTCTGCCTCTCCCAGAAACATCCTCTGG
CGGGCGGGAAGCAACGCCCGGGTCCGCACCCTGATGGGCCACACGACGGA
CGACTACTTCCAGCCGCGGGTGCAGTGGGACCCCTCCGGACTGTTCTCCT
ACTGCAACAGCTCTGGGGATCACGACGTTCACGTTCACTGCCTAGCCTCC
GGGTGGGTTGTGGTGTTTTCTTTGACAAGTCCTACTAAATATTGCAACAG
ACGCTTTCAATTTTTCTCCGAGTTTAGTTTTAGCGTGTTATGTGCTTTCA
CCGTCCCGTCAACAGGTTCCCCTCGTCGAACCGCAGGTTACTGTTGCCCT
GGCTGGCGCTTGCTCAATTTTCCTCTTGGCTGTGTAAGTTGCTGTTGAGT
TCAAAACCGTTTCTTACTTTTCCCGCTACCGCCGTCCGGCCTGGCATCGT
TCCATTCGATTCTTCGCGTCAACAGCCGCGCCGTGGAGCAGCTCAAGGGG
CACCGTGCCGTCATACGTGACATCCACCACGACCCTTCTAGAAGAGTTCT
CGTTACGGCTTCCTACGACAAGACTGTCAAAGTCTGGGGGGAGAGATGAG
GGGTCGGCTCTAGCGAGAACGGCAGTTATCTTGGGGGGGGGAATATCGAT
GAAGACTGCTCAAGATGGCGGAAACTTTATCGTACGTGCACGCCGGATGT
CGCCTTAGCTACCGAAGATTCGCTTTGGGGTCACGGGGCTCGTGTGCAAG
GAATAATAAGAACACCTTTCGACATGTTCATGTGTGGACTCGTTGTAAGA
TTGTTTTCACCCCGAAGTTGTGCGAGCCAAGAGAAACCACTGAGACACAA
TGGCTACGGTTCTTTCCCTCCCCCGGAATACTCACGACCCCTGTGCTAGA
TAGGGTGGGTAATGAGCCGCGGGTGACGACTCAATAACTCGCAGTAGTCT
ATCTGCGATGCTGTGCGATGTTGTTGTTCCGATCATGGAAGTGCAGCAGA
AGGAGGAGCCCCGCTCACAACAGAGAGAAAAGGAGCGCGCAGGATTGGTT
GGTGGTTTGGAGTGTTGGGAGTGTGGGATATGCAGGCTTGTGCGACGAGG
AAAATGAGCAGCGCTTGTTTGTACACATAGACTACATGTTGCAT
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Coding sequence (CDS) from alignment at Scaffold_228:398851..402944-

>EsuBft144_24a-0001 ID=EsuBft144_24a-0001|Name=EsuBft144_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=810bp|location=Sequence derived from alignment at Scaffold_228:398851..402944- (Ectocarpus subulatus male Bft15b)
ATGGACGGGAGTAGTCACCTCGTCTCCATCGATGGCGGCCACGGTGGTGA
TGCCGGTGATGGTAGCGACGGTGATGATGGCGAGGAGACGAACGGGGTGG
CGTTGTTGGCCTCCATGAAGAACCACGCCAAATACGTCGTCGTTTGCAGG
TGGGCACCTGACGGCAGAGCTTTCGTGACGGCCTCCCACGACAAGGTGGT
GACCCTGTACACCTTGAGGGGCGGGGGGGACGGGACGGGGCAGGGCGGCG
TCGGCGGCACGGGTTTTGAGCAGGCGACCCAGCTGTATTTTCCCGAGGCG
GTAGAGAGCGTGGAGTTCGTAAGGGGAGAAGGCGGTGCGCTGGAGCTGGT
GGTGTCGGCCAGGGCGCAGCCGCACCTCACGTACGTCAACATCGAGACCC
TCCAACAGCGCCGAGTGAGCCTGAACGAGAAGGAGTGGGATACCCACGTG
TCCTTCACGGTGATGTCCATGGCGGCCTCTGGGGACGGGAAGTACCTCCT
CGCCGCCACCGACAAAAGCAGAAACATCCTCTGGCGGGCGGGAAGCAACG
CCCGGGTCCGCACCCTGATGGGCCACACGACGGACGACTACTTCCAGCCG
CGGGTGCAGTGGGACCCCTCCGGACTGTTCTCCTACTGCAACAGCTCTGG
GGATCACGACGTTCACGTTCACTGCCTAGCCTCCGGCCGCGCCGTGGAGC
AGCTCAAGGGGCACCGTGCCGTCATACGTGACATCCACCACGACCCTTCT
AGAAGAGTTCTCGTTACGGCTTCCTACGACAAGACTGTCAAAGTCTGGGG
GGAGAGATGA
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