EsuBft967_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft967_6a-0001
Unique NameEsuBft967_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:313042..318159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft967_6
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length71
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_003540.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft967_6aEsuBft967_6aEctocarpus subulatus male Bft15bgeneScaffold_228 313042..318159 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_6a-0001-exonEsuBft967_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 313042..313083 -
EsuBft967_6a-0001-exonagat-exon-27640Ectocarpus subulatus male Bft15bexonScaffold_228 313136..313586 -
EsuBft967_6a-0001-exonagat-exon-27639Ectocarpus subulatus male Bft15bexonScaffold_228 317935..318159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_6a-0001-cdsEsuBft967_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 313042..313083 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_6a-0001-exonagat-five_prime_utr-15345Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_228 318099..318159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_6a-0001EsuBft967_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 313042..318098 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft967_6a-0001 ID=EsuBft967_6a-0001|Name=EsuBft967_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=718bp|location=Sequence derived from alignment at Scaffold_228:313042..318159- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGACGACTGCTGCTGAGCTTCGTTTTTTGAAGCCAGCAGGGTTCA
TCCAGCACGAGATGAACAGCAGCGACAGCAGTGCTCGAGACGGGGGCTTG
GCGAGGGAGGAAGGGAGGGGAAGCATGGGCGGAAGCAGCAGGAGAAGGAG
GAGAGGATCCAGCGCGAGGACGCTGGCGGCCGGGCTGGCGTTGACCCTGG
CCGCCTGCTCGACTCCGGCGTACGGATTTATGGTCCCCGCGGGGGCGGGA
GGAGCGGACCCGATGACGGGAGCGGCGGCGGCTGTGGCAGCCGGGCAGCA
CCGACAGCAGCAGCAGCAGCAGCAGCAGCAGTTCTCGCGGGGGGCGGTGA
CAGCGACTGCTACGGCAACCGCGACCTCCCCTTCGTGCCCTGGTTGCGCC
GCTCCGACGACATCGATGCTGGGGACGCACGGCGCCGGCGCCGGCGGCGT
GGTTATACCGTCGTCGCGACGCTCGTCGTGGACGGCCGGGGGCGGCGGCG
GATTTGAAGTCGGTGGGGTGGCGGGAGGGCGGAGGGGGGCGGCGGCGGCG
CTGAGGGACACCACGCGGAGACTGATAGCGGCTAGAAGGAAGCGAGGGGA
TGGTACGGAGTCGTTGTCGATGTCGTTGTCGGCAAGAGGCAGCAGCAACT
CGCGAGGAGGGGGTGGCAGCTCGAAGGGCCGCGCTAGATTCAGCAAAGTG
TACAGCGGCACGGAGTAG
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protein sequence of EsuBft967_6a-0001

>EsuBft967_6 ID=EsuBft967_6|Name=EsuBft967_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=218bp
MNSSDSSARDGGLAREEGRGSMGGSSRRRRRGSSARTLAAGLALTLAACS
TPAYGFMVPAGAGGADPMTGAAAAVAAGQHRQQQQQQQQQFSRGAVTATA
TATATSPSCPGCAAPTTSMLGTHGAGAGGVVIPSSRRSSWTAGGGGGFEV
GGVAGGRRGAAAALRDTTRRLIAARRKRGDGTESLSMSLSARGSSNSRGG
GGSSKGRARFSKVYSGTE
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mRNA from alignment at Scaffold_228:313042..318159-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft967_6a-0001 ID=EsuBft967_6a-0001|Name=EsuBft967_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5118bp|location=Sequence derived from alignment at Scaffold_228:313042..318159- (Ectocarpus subulatus male Bft15b)
ATGTACGACGACTGCTGCTGAGCTTCGTTTTTTGAAGCCAGCAGGGTTCA
TCCAGCACGAGATGAACAGCAGCGACAGCAGTGCTCGAGACGGGGGCTTG
GCGAGGGAGGAAGGGAGGGGAAGCATGGGCGGAAGCAGCAGGAGAAGGAG
GAGAGGATCCAGCGCGAGGACGCTGGCGGCCGGGCTGGCGTTGACCCTGG
CCGCCTGCTCGACTCCGGCGTACGGGTGAGAGAGACTGGCGAGCAAGATT
CTGTGTTGGAGACACACGTGACGTGGGCGTTTTTTTTTCACTAGATATTT
GAAGAACATATGCATAATGTGTTCGATGCTTTTTCATGTAGTTCTAGAAG
TATCCTCTCTTCAACAGCTAGCTTCGGTTGAGAGGTTAAGCGCGACTGCT
GTTCCGCCGTAGTGTTTGCCACCGACCCAAGGCGTATCGTGCTCTCGAGT
GTGCGGCCCAGACTCTGTCTGCACTCGAACAACGACACCAGCAGCGGAGA
AGATTCTTTCATTGAGTGGCCTTCAATTTATTCTGGTTGTGTGCATCATG
TGTTATGAGACCCGTTCTTTGGTTTTTCGGGTGTTCTCGTCGAATTGTTC
GCGGAGCCCCTCCGTTCGACACTCTTCGCCTTCCCTGCTGCCTCCAGGGT
TAGCTACTATCACGAGTACGTGATGATGATGCTGTTTGCTTTCACGGTTG
ACTAATGCAGAGTCTGCGCACGCCGCAGGTAGACCCTCGATAAAATGTCG
GAAGAGTGTGCAAAATAGAGGACGTACTTTTTTGCTGTTTTCCGATCGTT
TTTTTTTTGCTTGTGCGCGTTTCTCCTCACACGACGAAAACGAACGCTGT
ACGCCCCCCCGGCACTATTAATACGAGGATATGCAGCATATTATCGTGTG
TCCACTACCCCCAATAGTTCGTACCTTCGCCATCGACCAAGCTCAAGCTT
AGGTCTGCAACTCCACACACAGTTCCCCATGGCATTCCAAATACATTGAA
ACCTGTCTATTGCAACCGAAAGCAGGGTCTCGGCCTTTGAACAAGCTTTA
CAACCACCGCTGTGGCCGTTGGAAGCATCCGGCAGGCACCGGTACCGCTA
CCTCACTACCGAGCGGTCTTTGAACGCACCCTACAACCAATCCCCTTGTA
CCTACCCTCCATCGGAAACGGGAGCGAAAATTAACCATTCTTTGATTGAG
ACGCTGCGTTATTTTTCAAAGACACAAGCTTGACGAATAGGCTGAATATT
AACGAAGCGCCAAGAATCAAAATCCAAGAATTCAAAATCAAAATCGACAT
CCGATTGGTCAAATAAATCATACCTCATGACGACGCCCTTTGACTTTCTG
GAAGATTCTCTCTCCGGGAAGAAGTCCCCGAGGGAGTTTTTTATCAACAT
CAAAGATCAAAGAGGCAGGGAGTTCAAGACTTGGAAGGCTTGGAGCAACT
GCCGCGAGGCCGCTGAAAAAGCAAGTGTACGACACGGCCTGCTGTACACA
GCTCATCGAGGGGCTATGGGCATCCTACCACCGACACCATGGCCATTCGT
TGTAGCCAGAAGACTCTGCTCGCCGGCAAGCCCAAAACCGGGCCGGCTCG
TTGGGTGCTCGAGGAGAAAATACCGATCGTGACAAGCGGTGAACGGACTG
ACGATCCAAGCAGGGCGCGGCGTTGTCGGGGCTGTCCCGTGCGGGAGACG
GTACTCACAACCTTTTTTTCTCCACACTCACGATACCCCAAGGCATCTAG
CCTTGTACGAAAAAGATAGTGGGTAGAGGTACCTCCCGCCGCGTGGCATT
GCTCTCAGTGTTGTTGCTTCCTCCTTCGAAAGGATATCGCTGGAAAACTA
AACTGTGAGCAGACAATCGGCGCGAACTTGAACTATAATACCAGCTCTCT
GACGTGGATATCTTTGGGTCAACCAATTTTCTTCCCGATACGCACGATAC
CCCACGGTAGCAGACCTTGGGCTTGAAAGATGGAGCAGAGAGGTACCTCC
CGCCGCGTGGCGTTGCTGCTGCTGTTGCTTCCTCCTTCGGAAACTTATCG
GTGGAAAACCACCCCCGTGGCGACCCAAAACACCGAATCGAAGTGATCGC
TCGCAACAGTTGGCATTTTTGCTTCAACACAACCTTTTTTTCCGGCGCAT
TCGGCACCTAATGACGCCAAACCCTGGCATCGCCCAACAGCCCATGGCAC
CAGCTCCTTTCGGATACCGTTCTTGAGGCAAGTCGTTTTTCACTTGGCGA
GATATCGGCTAGCAGGTGAACAGAAGAGCGCAAAACCTACCCTAGAAAAT
TCACCGCGTCGCTGCTGGCTCTTCCCCCGGCGCCAGGTCTTGTTAATTAG
TCACCCCATCTGTTTCCTATCCACGTGAACATGTTCGACCCCCTTTTATT
CAGTTCCACGATACATTTTCGAAAAGACCGTTTCGACGCCGCCGTTTTCG
GCGCTGTGACTGTTCCGGCAGTTGAGAAATCGAGCTTCGAAATTCGGTCA
AGGGGGTGTGTTATATTGTGTCATATACGGTGTTCGGCCCTAAGGATGGT
GGAACAATTGTTCATGACCCCTCCCTACCCCCACCCGTTCTTTCGCAGTC
GAGGTGTCTCAGGCCTGATCGGATACAGCAGCTAGCGCCCGCGCTAAAAA
ACTTCGTAGTCAAGAGAGATTCGAGCCTCGAAAAGCTCGAAGTCAATGAA
TACGAACTTCAGCACCGTTTGTGTGCTCGGTCGAAGATACCTGTTCGCTA
GCACCCACCGTACGACGGCCACTCGCATATATGTATGTAGCATCGGCCTA
CGTAGGAACGAAGAACCCCAACCTCCTTGACCAAAAGTAGAGGTTCTTGA
GTGCGGCCGCTAGGCGTACACATGTATTCGTACCGATGTCATGTCTTGTC
ATCACAGGGCACCAACCGTATACGACACAAGATAAGACAAACCCTACACC
AATTTTCGAAGCTTGATTTCCCAGCAGCAGAAAGAGTGGGGGTGCCGAAA
ACGGCGGCGTTGAAGCCGTCTGGTCGAGAGCTCTCCGAAAATGTATCGTT
TCGTTTATGCAGCGTATTCGAGCTTTGAAAATCGGTCCAGGGGGTGTGTT
ATCTTGTGTCACATACGGTAGACGCGCCAACGGCCTACATACAGGCAGAG
CCAAAGGGATGTCCGAGAGGTATACGCAAAGTGCAAAAATGTATGTCACG
GGGGGGGGGAAGGGTACGCGGAGTGCGAAAGGGATGTCGCGAGGAATGTA
CAGGCGGAGAGACCCACAGCACCAAGATGTGGGCTCACAAAAACCTTCCC
TGATTGTGTTCGAGAATTGCGAAAGAGAAAGAGCAGTAGTGTACGCGGAT
TGCGAAAGGGGTGTAATGGGGGGTACACGGAGTGCGAACGGATGCCATGC
GCGTGAGATTGTGAAAAAATGAATATTTCAGCGCCACCCGCTGGGCGGCG
ACGTGGGTGATGTTTCAGTTTTCTCGTGGTGTGTATGTGTGTGATTGGAC
CTTCAGCTCACGGCGACTCTCACCGACACGGTACTGCCTGCATGGCCGAA
AAAGTCAAACAAGAACGCCCGCGCAATCTGTTGTTTTTTGGTACTGCAGT
TTAGTCGCGGGAAGGCTAGGACCATGTATCGCTCGTCCTCGATCGACAGT
AGTAGTCAATTCACATACCAGGCGGCACTTAGTGTCACGAGATCATCTCG
CAACCTCGACATGTCCGATATCCCTCATGCTAGGTCTACAGCAGTAGTCA
AGTCACATACCAGGCGGCACGTTGTGTGCCGAGATCACCTCCGAACCTCG
ACATCTCCGATATCGCTCATCCTAGGTCTGCAGCAGTAGTAGTCAAGTCA
CTTACCAGTCGGCACTTTGTGCCGAGATCGTCTCGTAACCTCGACATCTC
CGTTGGAACATGAAAGAAGCGGGCCGGCTCAGCATGACAGCAGTAACGGC
ACGCAGGCGGGCGGTTGGGTATATGTGAAACATATGTCTCCAGCAACTCA
GATTGAGGGTGTACGAAGGCGCCACTGGCGGCTGCTACTTGCGTGATCTG
TGTTTTACGAGATACCTACCACAGCTCTTTAGAAGCCGAAATTAAACCAA
TTAGACTGGTCAGCGCTGAGAAGTCTATCGGTTATTAGTTTGGGCTTCTA
AAAAAGATAGTCGTGGGATTCGTGAGCCCCGGCACTTTCACTTCCGAGTA
GGCGACCCCCCTTGCCAGCGCTACTCTCCGCCCAATCTTCAGTGCGGTCC
GTACCACTCGCACCCTACAACCTGCTGAATGTTCCAGGGTCTCAGACGAG
TCCTTCCGTCACCCATACTCTGGCCAGGAGTATCCAGGCTTTCAGGAAAA
GAAAACGCTTGAAAAGTGTCCAGCCAGGGTCTCGAACCCACAACTAGCTT
CATTTAAGCCGAAAATAAACCATGGTTTGAGGTCGGCTTCTGTAGCTCCA
AATAAAAGGTTTTCAGAAATCACGGGACATTCCGAAGAATGTTTCAAGAT
CGACGTCCGCCAAAAAAATTGCAGCAGCATCACAAACCCGCACACATGCG
CCTTTCGGCGTTGTCGACCTCAGATTTATGGTCCCCGCGGGGGCGGGAGG
AGCGGACCCGATGACGGGAGCGGCGGCGGCTGTGGCAGCCGGGCAGCACC
GACAGCAGCAGCAGCAGCAGCAGCAGCAGTTCTCGCGGGGGGCGGTGACA
GCGACTGCTACGGCAACCGCGACCTCCCCTTCGTGCCCTGGTTGCGCCGC
TCCGACGACATCGATGCTGGGGACGCACGGCGCCGGCGCCGGCGGCGTGG
TTATACCGTCGTCGCGACGCTCGTCGTGGACGGCCGGGGGCGGCGGCGGA
TTTGAAGTCGGTGGGGTGGCGGGAGGGCGGAGGGGGGCGGCGGCGGCGCT
GAGGGACACCACGCGGAGACTGATAGCGGCTAGAAGGAAGCGAGGGGATG
GTACGGAGTCGTTGTCGATGTCGTTGTCGGCAAGAGGCAGCAGCAACTCG
CGAGGAGGGGGTGGCAGCTCGAAGGTGACTTGTTTTTCTAACGTAGATGT
ATGTTGTACGAACGAGGTACGTGCAGGGCCGCGCTAGATTCAGCAAAGTG
TACAGCGGCACGGAGTAG
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Coding sequence (CDS) from alignment at Scaffold_228:313042..318159-

>EsuBft967_6a-0001 ID=EsuBft967_6a-0001|Name=EsuBft967_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=657bp|location=Sequence derived from alignment at Scaffold_228:313042..318159- (Ectocarpus subulatus male Bft15b)
ATGAACAGCAGCGACAGCAGTGCTCGAGACGGGGGCTTGGCGAGGGAGGA
AGGGAGGGGAAGCATGGGCGGAAGCAGCAGGAGAAGGAGGAGAGGATCCA
GCGCGAGGACGCTGGCGGCCGGGCTGGCGTTGACCCTGGCCGCCTGCTCG
ACTCCGGCGTACGGATTTATGGTCCCCGCGGGGGCGGGAGGAGCGGACCC
GATGACGGGAGCGGCGGCGGCTGTGGCAGCCGGGCAGCACCGACAGCAGC
AGCAGCAGCAGCAGCAGCAGTTCTCGCGGGGGGCGGTGACAGCGACTGCT
ACGGCAACCGCGACCTCCCCTTCGTGCCCTGGTTGCGCCGCTCCGACGAC
ATCGATGCTGGGGACGCACGGCGCCGGCGCCGGCGGCGTGGTTATACCGT
CGTCGCGACGCTCGTCGTGGACGGCCGGGGGCGGCGGCGGATTTGAAGTC
GGTGGGGTGGCGGGAGGGCGGAGGGGGGCGGCGGCGGCGCTGAGGGACAC
CACGCGGAGACTGATAGCGGCTAGAAGGAAGCGAGGGGATGGTACGGAGT
CGTTGTCGATGTCGTTGTCGGCAAGAGGCAGCAGCAACTCGCGAGGAGGG
GGTGGCAGCTCGAAGGGCCGCGCTAGATTCAGCAAAGTGTACAGCGGCAC
GGAGTAG
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