EsuBft967_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft967_10a-0001
Unique Name	EsuBft967_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_228	contig	Scaffold_228:268773..272256 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft967_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	278
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft967_10a	EsuBft967_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_228 268773..272256 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft967_10a-0001	EsuBft967_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_228 268945..269133 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft967_10a-0001-exon	agat-exon-27647	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 268773..269728 +
EsuBft967_10a-0001-exon	EsuBft967_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 270350..271724 +
EsuBft967_10a-0001-exon	agat-exon-27646	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 271801..272256 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft967_10a-0001-exon	agat-five_prime_utr-15341	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_228 268773..268944 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft967_10a-0001-cds	EsuBft967_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_228 268945..269133 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft967_10a-0001-exon	agat-three_prime_utr-23579	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_228 269134..269728 +
EsuBft967_10a-0001-exon	agat-three_prime_utr-23580	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_228 270350..271724 +
EsuBft967_10a-0001-exon	agat-three_prime_utr-23581	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_228 271801..272256 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_228:268773..272256+
coding sequence from alignment at Scaffold_228:268773..272256+

spliced messenger RNA

>EsuBft967_10a-0001 ID=EsuBft967_10a-0001|Name=EsuBft967_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2787bp|location=Sequence derived from alignment at Scaffold_228:268773..272256+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCTTCTTGCATGACGCACTTGCAAATAACAACCAGCACGACTCAAACG
CCTCCAGAACCACACAACCAGAAACCCATTTTCAAACTCAAAACAGAAGC
GAAACAACACAGCACATAACCACCGCCGACAGGCCGCACAGCACGCGCAA
CACAGCAGACCACACTGCAGACATGTCCCTGAAAAGGACGATACGTGACG
ACGAGCATTCAGTTGTCGCCGTAGAGGTAGAGGGCGGCGACGCGTGCATG
GCAACGTGGCAGCGGCGGCGGACTGAAGGTACCTCGTGCAATAGAGAGGT
GCCGGGGGGGGGAGGACAACAATGGCTCAATCCAGAGACTCCGGTGGGGT
ACGGGAGGTGATACCGGGGTTGGCGTAGGTCGTCTCCCACCATCTCCCAT
GGTATCATGGTCACTGAAAAATATATGGCATTGTTCACTTCTTGATTGTG
ATCCTCCATGGCGCTAGCGCTCCACAGCCACGAAGAGGCTACCGAGAATG
TTGGACTGCGAAGCGGGTGACAATTTTTGTGGATGCCATTTTGTTGAATA
CATTCACTCTTTCTTTTAGTGTGGGGGGTAGGGGCTATCTAGACCAGAGT
TGCTTGTTCTTTTCAATAGATCGATTCTATCATGATATCAATGACATGGA
ACTGTATATGACATTGTTCACGTGTTGATTGTGATCCTCCATGGCGCTAG
CGCTCCACCAGCACGAAGAGGCTACGGAAAATGCGAGCTGCGGGGCGGGT
GACTTTGTCTGGATGCCATTTTCGTGAATATATTCATTCTTTTTGGGGGG
GTAAAAGCTAGACTAGAGATGGTTGTGGTTTTCATTTTACCGCAGATGCA
TCTCGTCTCCGTTCTGTTGGGTGTCGGTACGAAATCTTTCGGTCACTCGC
GGCACTTGAGCATGATTGAAATAGGATCGACCCGGATCGAAGCTCTCCGT
TCCAAAGTTTCGTCGTGTATTGGCCGCCTTACAGCTGCAATGAGCAACCG
GTGCGTGCCAAATGAAGCCAACATTGGTACTTTCTATTTTACTTCCTATT
TATTGATACAAAACAATTGTACAAATGTTTCAATAATATCTGTTTCATTT
TTCTCCTAAGAAAATAGCTACCAGCATGGTTGGTTACACAATGATCGCAA
TATCATCAGAAATGTACTGTCTGCATTACAAATGCATCTATCTGTAAGAA
AACATTCACTCGCTAAAATTCGAAACAGCAACTGTTTCTTCTTTTTCTAC
GCCTGTCGCCATAGGCCTCGATCCAAAACGATATCCAACTCCTCGGCGTT
TTCGTCACCTGATGCTCCTTTCGCGGAAATAATGGCCGTCGACACGCGCT
AAAGGGGTCATTCCACGTGGCTAAGCAGCAATGACCAGGACACCTACCGG
CGAGAGAAACGTCATCTCCGCTTACGACATGGCATGGACTATTTTTCATT
GCTTTTCCCACAAGGCAGGGCATCCGGCTGCACGTTGCCATGCAAAGCAC
AACTGAGAATAAAATCACAGGGAAACACAGTTGTTGGTACGGGAACCCCG
ATTTCAAAAGTTGCTCCTTTGGTGAACGAATTCCTCATCGTCGTATTCAG
CCGCAACGAGGATCAACGACTCACCTTTCACGCACATAATCAAGACAACC
AAGACAAGTATCGCACTTCATTACACCACTCACAAGTTGGCGGTGTCACG
GATACCAAGATCCCTCGGGACTACTGTACATCTGCACCAACAGACAAAGT
TATCATTCCGTCCAGCTTTAGCCGTGGCAGAACGGGCGAACAACCTCACG
AAAGAAGCGATGGCCATCTCACGAGTGCTGCATCAGCACAAAACAAACAT
GTTTACACAATGAAACCTTGATTGGTTGATGAACGTTTACATTATATTCC
ACATCCGTCCAACCCTGAGAGGCCACAACCGGGTCGCCCAGAGCTCGCCG
GCGTCATCGATAACTACCATACGTTGGGCACGACCATACCGGCATTTTCA
CTCCCATCTAGTCTTTATAACAGACTTCAACCACCAACAACTTCAGCACT
TCATCGTTCCCGCTCGCAGCACCAGCTGCGAAGATTCCATCCCCCCACTC
GCCGCACGCACCCCTGTCACACTCGCCCCTATCCCCGAATTCTTCTCATT
CGCCATCCCATGGGTTAGACCTCTCCAAGAGCACCTCTAATACTTCCATG
CCCCCCAGCGCAGCAGTACATACATGCAGGAACGGACCCCAGCACGCACC
AGTACCATCTCCACACATAATGACAGACAACGTAAACTCCATACAATCAA
CATACAGACATACTCCGTAAATATACCTCCTACTAATCCCCCTGTCAAAA
CAAATATATATCCTGTCTGAACGTTTATTTTGATGAACCATGATCAAAAT
AAGATCTCACAGTTTCGTCGGGAGCGTCTCCTTCTCCTCCTCCTGCGGTC
TCTCCTTCTTCTCCCTGCTGCTGCTGCTGCTGCTCCTCCTCCTCCTCCTG
CCCCTCCTGCCGTTGTTCTCCGGCTGGGCTTGATCGCATGCACGCGTCGC
CGCCCTCTACCTCTACGGCGACAACTGAATGCTCGTCGTCACGTATCGTC
CTTTTCAGGGACATGTCTGCAGTGTGGTCTGCTGTGTTGCGCGTGCTGTG
CGGCCTGTCGGCGGTGGTTATGTGCTGTGTTGTTTCGCTTCTGTTTTGAG
TTTGAAAATGGGTTTCTGGTTGTGTGGTACTGGAGGCGTTTGAGTCGTGC
TGGTTGTTATTTGCAAGTGCGTCATGCAAATAGGGGT

protein sequence of EsuBft967_10a-0001

>EsuBft967_10 ID=EsuBft967_10|Name=EsuBft967_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=62bp
MSLKRTIRDDEHSVVAVEVEGGDACMATWQRRRTEGTSCNREVPGGGGQQ
WLNPETPVGYGR

mRNA from alignment at Scaffold_228:268773..272256+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft967_10a-0001 ID=EsuBft967_10a-0001|Name=EsuBft967_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3484bp|location=Sequence derived from alignment at Scaffold_228:268773..272256+ (Ectocarpus subulatus male Bft15b)
CCCCTTCTTGCATGACGCACTTGCAAATAACAACCAGCACGACTCAAACG
CCTCCAGAACCACACAACCAGAAACCCATTTTCAAACTCAAAACAGAAGC
GAAACAACACAGCACATAACCACCGCCGACAGGCCGCACAGCACGCGCAA
CACAGCAGACCACACTGCAGACATGTCCCTGAAAAGGACGATACGTGACG
ACGAGCATTCAGTTGTCGCCGTAGAGGTAGAGGGCGGCGACGCGTGCATG
GCAACGTGGCAGCGGCGGCGGACTGAAGGTACCTCGTGCAATAGAGAGGT
GCCGGGGGGGGGAGGACAACAATGGCTCAATCCAGAGACTCCGGTGGGGT
ACGGGAGGTGATACCGGGGTTGGCGTAGGTCGTCTCCCACCATCTCCCAT
GGTATCATGGTCACTGAAAAATATATGGCATTGTTCACTTCTTGATTGTG
ATCCTCCATGGCGCTAGCGCTCCACAGCCACGAAGAGGCTACCGAGAATG
TTGGACTGCGAAGCGGGTGACAATTTTTGTGGATGCCATTTTGTTGAATA
CATTCACTCTTTCTTTTAGTGTGGGGGGTAGGGGCTATCTAGACCAGAGT
TGCTTGTTCTTTTCAATAGATCGATTCTATCATGATATCAATGACATGGA
ACTGTATATGACATTGTTCACGTGTTGATTGTGATCCTCCATGGCGCTAG
CGCTCCACCAGCACGAAGAGGCTACGGAAAATGCGAGCTGCGGGGCGGGT
GACTTTGTCTGGATGCCATTTTCGTGAATATATTCATTCTTTTTGGGGGG
GTAAAAGCTAGACTAGAGATGGTTGTGGTTTTCATTTTACCGCAGATGCA
TCTCGTCTCCGTTCTGTTGGGTGTCGGTACGAAATCTTTCGGTCACTCGC
GGCACTTGAGCATGATTGAAATAGGATCGACCCGGATCGAAGCTCTCCGT
TCCAAAGTAAGCACGACCTCATCAGCCTGAGGGGCGATTCTTTGAGATGA
AAACGACTGAATACCGTTGGTGGCAGCTTGGGCGGGACGAAAAGGGAGGG
AGCTTCATGTGCACTGAGTGAAAGTGAAGCTGATCTGTTTCATCAGACCC
CTTAAAGAACATGGAAGTGGTCGTTGGGGGAAAACACAAAATGATACTCT
CTCCTGAACCCGGCCAAACATCGGGTTTACACATGAAACGGCCCATGCTC
GCCTCCGCATGACACATAAGTGGGCAACACCCCATGAAAATTGGACCACA
AGGAGGTCAGAAGAGTCCGAAGGCTAAACACCCCTGTTCGTGTTTGGCAT
TCCGTTCCTTGTTACTGACGTCATTTCATTACACGCTCATCGGGCTGTTG
ACACCGGAATACAGAGAATGCACACTCAGTCGCTCCTGCACACACTTATC
TCACATAATTCACTCGACGAAACTTTTTCACTTGCGCACTCATTTCATTG
AGCTCTCGTACTTCCCTCGATTCACTAAGGTTCATTTCACGCAGCTTAAT
TCGCTCACTCAGCCAAGCCAACTTACGGTGAACTCGATGAAGCCATGATG
ACAAAGATACGGACGGCTATGCAACAGGTTTCGTCGTGTATTGGCCGCCT
TACAGCTGCAATGAGCAACCGGTGCGTGCCAAATGAAGCCAACATTGGTA
CTTTCTATTTTACTTCCTATTTATTGATACAAAACAATTGTACAAATGTT
TCAATAATATCTGTTTCATTTTTCTCCTAAGAAAATAGCTACCAGCATGG
TTGGTTACACAATGATCGCAATATCATCAGAAATGTACTGTCTGCATTAC
AAATGCATCTATCTGTAAGAAAACATTCACTCGCTAAAATTCGAAACAGC
AACTGTTTCTTCTTTTTCTACGCCTGTCGCCATAGGCCTCGATCCAAAAC
GATATCCAACTCCTCGGCGTTTTCGTCACCTGATGCTCCTTTCGCGGAAA
TAATGGCCGTCGACACGCGCTAAAGGGGTCATTCCACGTGGCTAAGCAGC
AATGACCAGGACACCTACCGGCGAGAGAAACGTCATCTCCGCTTACGACA
TGGCATGGACTATTTTTCATTGCTTTTCCCACAAGGCAGGGCATCCGGCT
GCACGTTGCCATGCAAAGCACAACTGAGAATAAAATCACAGGGAAACACA
GTTGTTGGTACGGGAACCCCGATTTCAAAAGTTGCTCCTTTGGTGAACGA
ATTCCTCATCGTCGTATTCAGCCGCAACGAGGATCAACGACTCACCTTTC
ACGCACATAATCAAGACAACCAAGACAAGTATCGCACTTCATTACACCAC
TCACAAGTTGGCGGTGTCACGGATACCAAGATCCCTCGGGACTACTGTAC
ATCTGCACCAACAGACAAAGTTATCATTCCGTCCAGCTTTAGCCGTGGCA
GAACGGGCGAACAACCTCACGAAAGAAGCGATGGCCATCTCACGAGTGCT
GCATCAGCACAAAACAAACATGTTTACACAATGAAACCTTGATTGGTTGA
TGAACGTTTACATTATATTCCACATCCGTCCAACCCTGAGAGGCCACAAC
CGGGTCGCCCAGAGCTCGCCGGCGTCATCGATAACTACCATACGTTGGGC
ACGACCATACCGGCATTTTCACTCCCATCTAGTCTTTATAACAGACTTCA
ACCACCAACAACTTCAGCACTTCATCGTTCCCGCTCGCAGCACCAGCTGC
GAAGATTCCATCCCCCCACTCGCCGCACGCACCCCTGTCACACTCGCCCC
TATCCCCGAATTCTTCTCATTCGCCATCCCATGGGTTAGACCTCTCCAAG
AGCACCTCTAATACTTCCATGCCCCCCAGCGCAGCAGTACATACATGCAG
GAACGGACCCCAGCACGCACCAGTACCATCTCCACACATAATGACAGACA
ACGTAAACTCCATACAATCAACATACAGACATACTCCGTAAATATACCTC
CTGTCAAACCAAATATCCTGCTGTCTGAACGTTTATTTTGGTGAGCCATG
ATGTGTAGTCTATAGACTATCTATGTAGACTAATCCCCCTGTCAAAACAA
ATATATATCCTGTCTGAACGTTTATTTTGATGAACCATGATCAAAATAAG
ATCTCACAGTTTCGTCGGGAGCGTCTCCTTCTCCTCCTCCTGCGGTCTCT
CCTTCTTCTCCCTGCTGCTGCTGCTGCTGCTCCTCCTCCTCCTCCTGCCC
CTCCTGCCGTTGTTCTCCGGCTGGGCTTGATCGCATGCACGCGTCGCCGC
CCTCTACCTCTACGGCGACAACTGAATGCTCGTCGTCACGTATCGTCCTT
TTCAGGGACATGTCTGCAGTGTGGTCTGCTGTGTTGCGCGTGCTGTGCGG
CCTGTCGGCGGTGGTTATGTGCTGTGTTGTTTCGCTTCTGTTTTGAGTTT
GAAAATGGGTTTCTGGTTGTGTGGTACTGGAGGCGTTTGAGTCGTGCTGG
TTGTTATTTGCAAGTGCGTCATGCAAATAGGGGT

Coding sequence (CDS) from alignment at Scaffold_228:268773..272256+

>EsuBft967_10a-0001 ID=EsuBft967_10a-0001|Name=EsuBft967_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=189bp|location=Sequence derived from alignment at Scaffold_228:268773..272256+ (Ectocarpus subulatus male Bft15b)
ATGTCCCTGAAAAGGACGATACGTGACGACGAGCATTCAGTTGTCGCCGT
AGAGGTAGAGGGCGGCGACGCGTGCATGGCAACGTGGCAGCGGCGGCGGA
CTGAAGGTACCTCGTGCAATAGAGAGGTGCCGGGGGGGGGAGGACAACAA
TGGCTCAATCCAGAGACTCCGGTGGGGTACGGGAGGTGA