EsuBft1456_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1456_4a-0001
Unique NameEsuBft1456_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:109980..111502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1456_4
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length61
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_003400.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_4aEsuBft1456_4aEctocarpus subulatus male Bft15bgeneScaffold_228 109980..111502 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_4a-0001-exonagat-exon-78423Ectocarpus subulatus male Bft15bexonScaffold_228 109980..110300 +
EsuBft1456_4a-0001-exonagat-exon-78422Ectocarpus subulatus male Bft15bexonScaffold_228 110853..111011 +
EsuBft1456_4a-0001-exonEsuBft1456_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 111371..111502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_4a-0001-cdsEsuBft1456_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 109980..110300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_4a-0001EsuBft1456_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 109980..111502 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1456_4a-0001 ID=EsuBft1456_4a-0001|Name=EsuBft1456_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=612bp|location=Sequence derived from alignment at Scaffold_228:109980..111502+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTGCATGGGGTCTGTTCCCTTTCCACCAAGCGCAGCTCATAGCTC
GCAACAATCAGAAAGCTATCAAGCCTGCAAAGCCTCTTCGAAGCGCGAGA
CCCGACGGATGTCTCGAGAAAAGGCGGCGTTGCGCCCCTTTGTTCGTTCG
TCTGCCGGTCGGTCGCTTGGCGGTGGCGGTCGCCGTGCTATGCTGGCCTT
GGTGTCAGCCGTCCACGTGGACCTGGTGGAGGGCAAATGTGAGTCGAGTG
TGGCAAGCGTCGCACCGACGATCGTTGTGAAACAGGAGTTCCTTGGCGGT
CATGGTGAAGCTCGGACCCATAGTCGGGGCCTCACGGTTCACGGAATGCC
CTCCGGTTCTTGTCCCGTCCCGTTGCTGATATTCACCCCGTGGCACGCAG
GGCTGATTGAGTTTCCGTCGGGGGTCAGGTGCATGTGGAACGAGCTACCG
CACGGTCTCCAGTTCGCGATTCTCTTTCTGATGCTGGGGATTCTGTACGG
AGTCAACCGACTCTTCGACAAAGCCGACGAGGCTATGTACACTCGCGTGA
CCTGCGCCACGGCAGGGCTACTGAGAGAGAGGAGGCACCACCACGCTCCC
CAAATGTGTTAG
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protein sequence of EsuBft1456_4a-0001

>EsuBft1456_4 ID=EsuBft1456_4|Name=EsuBft1456_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=203bp
MACMGSVPFPPSAAHSSQQSESYQACKASSKRETRRMSREKAALRPFVRS
SAGRSLGGGGRRAMLALVSAVHVDLVEGKCESSVASVAPTIVVKQEFLGG
HGEARTHSRGLTVHGMPSGSCPVPLLIFTPWHAGLIEFPSGVRCMWNELP
HGLQFAILFLMLGILYGVNRLFDKADEAMYTRVTCATAGLLRERRHHHAP
QMC
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mRNA from alignment at Scaffold_228:109980..111502+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1456_4a-0001 ID=EsuBft1456_4a-0001|Name=EsuBft1456_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1523bp|location=Sequence derived from alignment at Scaffold_228:109980..111502+ (Ectocarpus subulatus male Bft15b)
ATGGCTTGCATGGGGTCTGTTCCCTTTCCACCAAGCGCAGCTCATAGCTC
GCAACAATCAGAAAGCTATCAAGCCTGCAAAGCCTCTTCGAAGCGCGAGA
CCCGACGGATGTCTCGAGAAAAGGCGGCGTTGCGCCCCTTTGTTCGTTCG
TCTGCCGGTCGGTCGCTTGGCGGTGGCGGTCGCCGTGCTATGCTGGCCTT
GGTGTCAGCCGTCCACGTGGACCTGGTGGAGGGCAAATGTGAGTCGAGTG
TGGCAAGCGTCGCACCGACGATCGTTGTGAAACAGGAGTTCCTTGGCGGT
CATGGTGAAGCTCGGACCCATGTATAGCGGCAACATGCACGTGTTGGCAT
TCGATTGATTCGTATTATCCTGTCCAACAGACTACGAATGACATGTTGCC
AGTCTTCGTAGGGGAGCAGCGAAGGACAGGATTTTGTGAGATTTTAGGGC
GCACCAGCCGGCCGGGGTACTACTGGAGGAATGCACAGAAGCACCCACCC
TTCTTCGTCTGGTCCTTGCTTCGATGGCGTTTTACTTTATTGTTATTTCT
GGTCACCAGAAGGCCTCAGCATTTTACCCCGCATTGACCGTGAAGATCGA
AACCACCGTGCGCGCGTTTCTGTCAATGCACACGACCTACCGTGCAGTCA
CTGTTCCCAAGCGTTTGGGAGCGACTTGAGGTGCTGGTTCGCGTGATGGC
GCCGAAATTCGAAACACACCGCCAATCTCAGAAAACGTCCAGGGGTGTGA
ACTATCTGAGGTCGACCGGTGGATCTTCCACGAGTTGTTTCTCCTAGCCC
TCCTTCCAAAAACCGATGCAGATATTGGAAACTTGTTTCATGTGTGCGAA
ATCTTCGACCTATTGCTCGACAGAGTCGGGGCCTCACGGTTCACGGAATG
CCCTCCGGTTCTTGTCCCGTCCCGTTGCTGATATTCACCCCGTGGCACGC
AGGGCTGATTGAGTTTCCGTCGGGGGTCAGGTGCATGTGGAACGAGCTAC
CGCACGGTCTCCAGTTCGCGATTCTCTTTCTGGTAAGAGAAGCGGTAGTC
GTCGAGTACGCTATCTTTTTTCAGGCAAAGTTAGTTCACGGCGGTGGTGC
AACAAGCGTGTAGATCTCGATCCTTGCCTACTACGTTCTGTATGCTGCTG
GCGGTTGTGTCGTAAACAGTAGGAAACATCGTGTCGCCTTCTCAAAGTGA
CCACCGGGGTCTCGGTCTCGAAGGCTGGAGAAACTTTGAGCTGTAAACCG
AAGTCTCGGTCTTGACGGCTCGAGAGTCATTGAATTCTCGACCGAATTCT
TCGTTTCGACGGCTGGAGCGTCTTTGAGTGATCGACCGGAGACCGAACCT
GCTCCAATCGTGCACAATAATGTGCTTCGGCTCACGCGCAGATGCTGGGG
ATTCTGTACGGAGTCAACCGACTCTTCGACAAAGCCGACGAGGCTATGTA
CACTCGCGTGACCTGCGCCACGGCAGGGCTACTGAGAGAGAGGAGGCACC
ACCACGCTCCCCAAATGTGTTAG
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Coding sequence (CDS) from alignment at Scaffold_228:109980..111502+

>EsuBft1456_4a-0001 ID=EsuBft1456_4a-0001|Name=EsuBft1456_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=612bp|location=Sequence derived from alignment at Scaffold_228:109980..111502+ (Ectocarpus subulatus male Bft15b)
ATGGCTTGCATGGGGTCTGTTCCCTTTCCACCAAGCGCAGCTCATAGCTC
GCAACAATCAGAAAGCTATCAAGCCTGCAAAGCCTCTTCGAAGCGCGAGA
CCCGACGGATGTCTCGAGAAAAGGCGGCGTTGCGCCCCTTTGTTCGTTCG
TCTGCCGGTCGGTCGCTTGGCGGTGGCGGTCGCCGTGCTATGCTGGCCTT
GGTGTCAGCCGTCCACGTGGACCTGGTGGAGGGCAAATGTGAGTCGAGTG
TGGCAAGCGTCGCACCGACGATCGTTGTGAAACAGGAGTTCCTTGGCGGT
CATGGTGAAGCTCGGACCCATAGTCGGGGCCTCACGGTTCACGGAATGCC
CTCCGGTTCTTGTCCCGTCCCGTTGCTGATATTCACCCCGTGGCACGCAG
GGCTGATTGAGTTTCCGTCGGGGGTCAGGTGCATGTGGAACGAGCTACCG
CACGGTCTCCAGTTCGCGATTCTCTTTCTGATGCTGGGGATTCTGTACGG
AGTCAACCGACTCTTCGACAAAGCCGACGAGGCTATGTACACTCGCGTGA
CCTGCGCCACGGCAGGGCTACTGAGAGAGAGGAGGCACCACCACGCTCCC
CAAATGTGTTAG
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