EsuBft112_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft112_2a-0001
Unique NameEsuBft112_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_213contigScaffold_213:357923..363003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog42099.EPrPV00000013334
ProteomeIdEsuBft112_2
Protein domainsCoil
Protein domainsIPR019434
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl121069|Pythiales
Length166
Hectar predicted targeting categoryother localisation
Evalue0.000376
EggNOG OGs2E2EM@1|root,2S9NE@2759|Eukaryota,1MHJ6@121069|Pythiales
Ec32 ortholog descriptionUncharacterised protein family UPF0642
Ec32 orthologEc-07_001560.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptionfunction. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft112_2aEsuBft112_2aEctocarpus subulatus male Bft15bgeneScaffold_213 357923..363003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft112_2a-0001EsuBft112_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_213 358224..361994 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft112_2a-0001-exonEsuBft112_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_213 357923..357937 +
EsuBft112_2a-0001-exonagat-exon-7390Ectocarpus subulatus male Bft15bexonScaffold_213 358161..358359 +
EsuBft112_2a-0001-exonagat-exon-7388Ectocarpus subulatus male Bft15bexonScaffold_213 359186..359310 +
EsuBft112_2a-0001-exonagat-exon-7389Ectocarpus subulatus male Bft15bexonScaffold_213 360268..360513 +
EsuBft112_2a-0001-exonagat-exon-7391Ectocarpus subulatus male Bft15bexonScaffold_213 361920..363003 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft112_2a-0001-exonagat-five_prime_utr-787Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_213 357923..357937 +
EsuBft112_2a-0001-exonagat-five_prime_utr-788Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_213 358161..358223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft112_2a-0001-cdsEsuBft112_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_213 358224..358359 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft112_2a-0001-exonagat-three_prime_utr-1243Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_213 361995..363003 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft112_2a-0001 ID=EsuBft112_2a-0001|Name=EsuBft112_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1669bp|location=Sequence derived from alignment at Scaffold_213:357923..363003+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAGAGGGGAGGTCGCCAGCAGCTGCAGCAGGAGCAAGCGAAGACACAGAG
ACGAGTCGTCGAGGAAAGCCAAAACAAGATGGCCAAGAGTATTCGGTCGA
AGGTGAAGAAGAGGAACAGGACGGAGATGCGCAAGAACGTAGGCGACCCC
CACCAGCGGAAGCTGCAGGCACGCTGCACCGCTAAGATCCAGAAATCCGT
CGCATTTAGCGCAGGCGAGAGCGTGACGAAGCTCAAGGGCATGCTGACCG
CGGCGCAGGCGGCCAACCCGCCGTCCAAGGAGGTTTCCAAGAGCGGGTTC
TCTTTCCGGCACCCTGACGCGCCCCCTCCGTTCGACGACGATAAAAATGA
AGCGACGGCACCGGCGCCGTCCCCGTCGCGAAACGCCCGCGGCCGTACCC
GAGGGCGAGCGAGGAGCCTCTCCGACGCCGAAGCCTCCATGGTCGACGAG
GACACGGCCATGGGAGATGCGGGAGATGGTGGCGAGGAGGATGCTGGCGG
GGGACCCGCGGGCGGCGGGGGGGGGGACGGGGTCAGTGGGGGTGCAAAGG
GCGGCGAGGGGGAACGAAACACGGCCTCTGATGTGGCCGCGAAGCTCAAG
AAGAAGCGTCGACAAGCCAAGAGGAGAAATTACGTCGAGTTCCCCGCACA
CGAAAATTGACAAGACAACCACCCTGCATTCCTGTGTACGTCCGTGGACG
ATGCATGCGCCGCGCTCCTGGGTCAAAAGGACAACGTGGTACAGGCGTTT
CCTTGACTGGGCCAAATTTTGTTTTGAGGCGAGGGGCCGTGTACTCATAG
TCGTGCATGCCGTAGTCGTTAGACCATTGACCTCGCATCGCACCAATGCC
GAAGATGGAGCGATTGTCGGGTTCTCGCCGACCTACGCTGCGTTTCACAA
GGATGACCCAGAAGCTGGTCATGATCCTTGCGTTTGCTGTGCCAAACCAG
ATATGCCATGGGTTGAATGGGCATCCCGGGTGTATTACTTGCTTGACGTA
ACCTGATCGAGTGTGTATCGCAGGTGTTGTCTCTTTCTATTTTAATGTGG
CAACAGTTGTGGTGGACGATGTGCTACAATATCAAAGGCGCCTTTTCTCT
TTTTTATTGCTCCTCGGTCGATTAGCTGCTGGATTGTTGTCCTTGACGAC
AGCGTGTGCCGTACCTAGTTTGCACGTTTACCTGCAAGAATAATGGTAAG
AACGAGCTGATTCCGAAGAGGCTGAACGTCGCTATTTGCAGAGAACATTA
CAAGCCGCTAAGAAAACGTACGAAGTGCGTGATTGATTCTTATTGGCCTA
CTACCGAAGCGCGGCTAAATTGTGATTGGCCGAACGGTGCGAATATTACG
TCGTCTTGAAGCGGCGTGTTCCACGCTGGCCATCACCCCCCCCTGTTGCT
TCGGCCGGTGCGTGGATGATTGATAGTCGTATGCAGTTACCCGGTGAGAG
TGGCTTTACCATGGTGTTTGGATATTCAAACGTTGTTCGTCTTGAAACGA
TTCAGCCCTTCGAGTAAACCTTCGCCGTGTTGCCAAGCTTGAGCAGTTTG
TCGGCCGGTGGATGGTGGCTGGGCAACAGGCCAGACGCCGACATCATACC
GCCACTGCTGTGTCGACGAGCAGCGCATATGTATCTCCTTCGAAAATGTT
TTCCTCCGCAGGTTTCTTG
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protein sequence of EsuBft112_2a-0001

>EsuBft112_2 ID=EsuBft112_2|Name=EsuBft112_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=193bp
MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVT
KLKGMLTAAQAANPPSKEVSKSGFSFRHPDAPPPFDDDKNEATAPAPSPS
RNARGRTRGRARSLSDAEASMVDEDTAMGDAGDGGEEDAGGGPAGGGGGD
GVSGGAKGGEGERNTASDVAAKLKKKRRQAKRRNYVEFPAHEN
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mRNA from alignment at Scaffold_213:357923..363003+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft112_2a-0001 ID=EsuBft112_2a-0001|Name=EsuBft112_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5081bp|location=Sequence derived from alignment at Scaffold_213:357923..363003+ (Ectocarpus subulatus male Bft15b)
CAGAGGGGAGGTCGCGTCCCTCGCCCCTCGCCTTAAAGAGACTGGTTAAA
CCTTGCCTGCTGTCTTGAAAGATTGTCGTCATCCTCACGACAAAAAGGCC
CTGCTGATAACGTGTAATTTTAGTAGCAGCAGCAGTAGTAGCAGCAGCAA
AGACTGGTCCCACCCTGCCTGCTGTGATAAGTTTGTCGGCACACTGACGA
CAAGAAGAACTTCCTGATAATGTGTCCCATGAATTCAGCAGCAGCTGCAG
CAGGAGCAAGCGAAGACACAGAGACGAGTCGTCGAGGAAAGCCAAAACAA
GATGGCCAAGAGTATTCGGTCGAAGGTGAAGAAGAGGAACAGGACGGAGA
TGCGCAAGAACGTAGGCGACCCCCACCAGCGGAAGCTGCAGGCACGCTGC
ACCGCTAAGATCCAGAAATCCGTCGCATTTAGCGCAGGTGGGTTGCATCG
CGGCCTTCACAGCGTCGAGGTGCCGGGTCTTGTTAGGTTAGGGTCTTGAG
GCTCGGCGTGAGAGAGGGGGGGTGATATCATAGCCGTGCAGGCCATAGTC
GTCAGGCCATTCACCTCACATGAAGGCAACAACAACAACAACTACACAGC
CGAGACGGAGCACGCCGGGTTCTCACTGGACTAGGGGGTGTATGTGGGTC
AAGTTCATGAGGTGCTGGCAGTGCGGCGTATCGAAATGTTGTGTGTGTGA
TGTTGTTGGAACTGCTTGTTGAATTCCGTAAACGGAGTGGCACACATTGG
ATCACAGTAGATGGGAACCTTTTTTCATGAACAGCTGTCTGTGTACTTGA
ACCGCACGAGCATGGTTGCGCTCTGTTTCCCTTCTCGCTGGTCTCACCAT
GTTTCCATGAGACACACTTAAGACTATCGTACTCCACTGTACTAATACAC
ATGTCTACCCTCAGTAGCAGCGAGTTTGATAGACACGGAAGGCGCAGCGC
ATCTGATGAGCTTCGGTTTTCGTTGGCCCAGGCCTGTGTTGCCCGTGCTG
CTCGTCCCGGGTATTCCGTACGCCCCTGCGCTACCTTCGCTTCCGCCAGT
TCTTGCGCCTTTCCATCAATCCGACATGGGTTTGTAACTACAACTCTTGT
TCCCGGGTGTTTTTGCTTCGTGACCATGGCTACATAGTCGAACGATCCCC
ACAGCCTCTGCGGGCAAGTTAATTTTAAACCGTGCCTCTTTTCTCTTTTT
TTGGGGGGGGGGGCGGCGTGTGCGGTTTTCCTCGTGCGGCGCCGCGCGCA
TACCCACCACCAGGCGAGAGCGTGACGAAGCTCAAGGGCATGCTGACCGC
GGCGCAGGCGGCCAACCCGCCGTCCAAGGAGGTTTCCAAGAGCGGGTTCT
CTTTCCGGCACCCTGACGCGCCCCCTCCGTTCGACGACGTGAGTGCCTTC
AATTTCCGCTGCTGTACAGTAGTAGCCGCTCGAATATGCTATTTGCGTGT
TTTGTCTCATTTTTGGTTGACTTTATTTATTTTCCTGTTCTCGGCTCCTC
TGCATAGCGAACCTGCGTTTCGCCTTGCCTCTGTAGCTGAGCATCTATGT
TCAGGGCGCCGCAGTGTTCCCGATTGGTGGGCTTTTTTCGAAAGGAATGT
TTTTTTTTAATATGGTAAACTTACGTGAAAAATCCCCTGGTCGACCGGTG
ACGTTTTCGTCAGTGTCAGATTGACGCGTGAACGTTCCTGACGCCAGACA
GGCTGTTCGCCACCCACATGTCTTTTACATGCGCGCCTCAGTTATTGGGG
GGCCTTGTGCAAGGCCAGGGAGACGCTCTCTACCCACCGACCGCACTGTC
GTCCCTCACGTAGCGATCCCGCCCGGCAGTTAAACAGTAGTCCCCGCCTG
GTCAACGACTCCGTGACGCCGACAACGGGTCGTTCCAGATGCGCCTTGGA
ACGGGCCGTTTGTTGCCGCCACCGTGTCGCCGAGCCAGGCGTGGAATACT
GCTTTAGTGCCGGCGCCGCTGCTTCGGAGATGAACGCACCTCGCATGCCA
AAACGCACCGCTCGAGAATACTTAAAAAAAGCAGCAGCTGGAGATTTGGT
TGGAGTGGCCGATGCCCAGAAGGCGGCAAAGTAATGGATAGGCCGTCAAC
CTTGGCAAATCCTTGGCGACACCTTGTTGAATTCTCACGTCCTCGCTGAT
CCCTGGCGTGCGCAAATCCATTGGAGTCACTTTTTTTTTGTTTCACCTTT
TTTTTTTCTTTCGGCGGTCACGCTCCTGAGTTTAGTCTTGATCATTTTTT
TATTCTTATTTTGCTCCTGCTTCCCTCGCTCTCTCTCTTTCTCCCTCTCT
CTCTCTCTCTCTCTCTCCCTTCCCCTTGTCTTTCCCCGGCTTAAGGATAA
AAATGAAGCGACGGCACCGGCGCCGTCCCCGTCGCGAAACGCCCGCGGCC
GTACCCGAGGGCGAGCGAGGAGCCTCTCCGACGCCGAAGCCTCCATGGTC
GACGAGGACACGGCCATGGGAGATGCGGGAGATGGTGGCGAGGAGGATGC
TGGCGGGGGACCCGCGGGCGGCGGGGGGGGGGACGGGGTCAGTGGGGGTG
CAAAGGGCGGCGAGGGGGAACGAAACACGGCCTCTGATGTGGTGAGATTT
TGTAGAAGATCGGGATTAACTGCTTCTGCGGGACGGACCCCCCCTGTGTT
TCGCCCCCTCCCCCCGGTGTTGCCGCCCCTCCCGGTGTTTGCCATCGGGG
TTGGGTTTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCGCCCCCCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGATGCGAGGTCAATGGTCTAACGACTACG
GCATGCACGACTATGAGTACCCCCCCCCGGTGTTGCCGCAGCTGACGGAC
GTAACTCCAATTGCCCAAAGTCGGCGATTACGCGTACGTAACATCTTCAT
GTAACATCTTCCAGTCGCAGTAGCCGACATCATTGAGACTTTGTGTCGTG
GTCCCGGGGGCTCCGCCGTTTCGCATTGGATTTCTTCGTAGGCAAGTGGC
GGCGCCCGACCAGGAAATTGTCTGCCTGGTGCATACGCAGGGGCAACCAC
GCAAAAACAATGGAATGGTAACAGCTTTGTTGTTTTCGGGCGTGTGGAAC
ACATTTGACCATGTGGCGGACGTATGCTAGCGCCCCCCTTGAAACGACGC
CCGTGGATCGACTCGACGCCAGCCGTTCGGGTTCTGGTTGTCATTTTTAT
TGAATCCTTCTTTCTGTCTAGCGAAAAATAATATCGCTCCTGAATGAATA
CATCGGGGGAAGCAATAAGGAGGTGACAATAGTGTCCGTGACATCTGTCA
AGGGTGGAAGATCTCCTCTCTCTCTCGTCACATTCAATTGATGACACCGT
CCTGTGCATATCTCGGGTGCATACATGACAGGCGACTCATGCTTCCCCCA
ACCTTTCGTAATTTATTGTTCTCGCCGCCCCTGAGGCTCCCTCCTGACGC
TTGCCTCATTTTCTATTTTTTCCACACGTTACCTCCATGCGTTTTACCAC
CGCCTTCGACAATATGTCCAACCTGGATGTCAACGTCTTGTGCGCAGGCC
GCGAAGCTCAAGAAGAAGCGTCGACAAGCCAAGAGGAGAAATTACGTCGA
GTTCCCCGCACACGAAAATTGACAAGACAACCACCCTGCATTCCTGTGTA
CGTCCGTGGACGATGCATGCGCCGCGCTCCTGGGTCAAAAGGACAACGTG
GTACAGGCGTTTCCTTGACTGGGCCAAATTTTGTTTTGAGGCGAGGGGCC
GTGTACTCATAGTCGTGCATGCCGTAGTCGTTAGACCATTGACCTCGCAT
CGCACCAATGCCGAAGATGGAGCGATTGTCGGGTTCTCGCCGACCTACGC
TGCGTTTCACAAGGATGACCCAGAAGCTGGTCATGATCCTTGCGTTTGCT
GTGCCAAACCAGATATGCCATGGGTTGAATGGGCATCCCGGGTGTATTAC
TTGCTTGACGTAACCTGATCGAGTGTGTATCGCAGGTGTTGTCTCTTTCT
ATTTTAATGTGGCAACAGTTGTGGTGGACGATGTGCTACAATATCAAAGG
CGCCTTTTCTCTTTTTTATTGCTCCTCGGTCGATTAGCTGCTGGATTGTT
GTCCTTGACGACAGCGTGTGCCGTACCTAGTTTGCACGTTTACCTGCAAG
AATAATGGTAAGAACGAGCTGATTCCGAAGAGGCTGAACGTCGCTATTTG
CAGAGAACATTACAAGCCGCTAAGAAAACGTACGAAGTGCGTGATTGATT
CTTATTGGCCTACTACCGAAGCGCGGCTAAATTGTGATTGGCCGAACGGT
GCGAATATTACGTCGTCTTGAAGCGGCGTGTTCCACGCTGGCCATCACCC
CCCCCTGTTGCTTCGGCCGGTGCGTGGATGATTGATAGTCGTATGCAGTT
ACCCGGTGAGAGTGGCTTTACCATGGTGTTTGGATATTCAAACGTTGTTC
GTCTTGAAACGATTCAGCCCTTCGAGTAAACCTTCGCCGTGTTGCCAAGC
TTGAGCAGTTTGTCGGCCGGTGGATGGTGGCTGGGCAACAGGCCAGACGC
CGACATCATACCGCCACTGCTGTGTCGACGAGCAGCGCATATGTATCTCC
TTCGAAAATGTTTTCCTCCGCAGGTTTCTTG
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Coding sequence (CDS) from alignment at Scaffold_213:357923..363003+

>EsuBft112_2a-0001 ID=EsuBft112_2a-0001|Name=EsuBft112_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=582bp|location=Sequence derived from alignment at Scaffold_213:357923..363003+ (Ectocarpus subulatus male Bft15b)
ATGGCCAAGAGTATTCGGTCGAAGGTGAAGAAGAGGAACAGGACGGAGAT
GCGCAAGAACGTAGGCGACCCCCACCAGCGGAAGCTGCAGGCACGCTGCA
CCGCTAAGATCCAGAAATCCGTCGCATTTAGCGCAGGCGAGAGCGTGACG
AAGCTCAAGGGCATGCTGACCGCGGCGCAGGCGGCCAACCCGCCGTCCAA
GGAGGTTTCCAAGAGCGGGTTCTCTTTCCGGCACCCTGACGCGCCCCCTC
CGTTCGACGACGATAAAAATGAAGCGACGGCACCGGCGCCGTCCCCGTCG
CGAAACGCCCGCGGCCGTACCCGAGGGCGAGCGAGGAGCCTCTCCGACGC
CGAAGCCTCCATGGTCGACGAGGACACGGCCATGGGAGATGCGGGAGATG
GTGGCGAGGAGGATGCTGGCGGGGGACCCGCGGGCGGCGGGGGGGGGGAC
GGGGTCAGTGGGGGTGCAAAGGGCGGCGAGGGGGAACGAAACACGGCCTC
TGATGTGGCCGCGAAGCTCAAGAAGAAGCGTCGACAAGCCAAGAGGAGAA
ATTACGTCGAGTTCCCCGCACACGAAAATTGA
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