EsuBft3555_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3555_4a-0001
Unique Name	EsuBft3555_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_211	contig	Scaffold_211:11088..15184 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft3555_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	168
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3555_4a	EsuBft3555_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_211 11088..15184 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3555_4a-0001-exon	agat-exon-96277	Ectocarpus subulatus male Bft15b	exon	Scaffold_211 11088..11139 +
EsuBft3555_4a-0001-exon	EsuBft3555_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_211 13555..15184 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3555_4a-0001-exon	agat-five_prime_utr-8726	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_211 11088..11110 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3555_4a-0001-cds	EsuBft3555_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_211 11111..11139 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3555_4a-0001-exon	agat-three_prime_utr-13756	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_211 14288..15184 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3555_4a-0001	EsuBft3555_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_211 11111..14287 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_211:11088..15184+
coding sequence from alignment at Scaffold_211:11088..15184+

spliced messenger RNA

>EsuBft3555_4a-0001 ID=EsuBft3555_4a-0001|Name=EsuBft3555_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1682bp|location=Sequence derived from alignment at Scaffold_211:11088..15184+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCGGCGGGAGTACGTGGCGAAGATGCTCATCCTGCGAAAGATGATGTCC
ATCCCCGTCCAGGTAGAAACTGTGACGATGGCGAGAGTACGCGACGCGCC
CGAAGGGGGGGGCGCATCTACTGGGGGAGGCGACGACGACGACGTCGTTG
AGGGATGGGCAACCGGTTCGGACCCGCTGTTCTGGCCAGCAGTTCGAAGC
ACGGCGGACGGCAAGGAGGACGTCAAGCACGTGCTAGTTCACGGCGAACT
TCGGGCCGAGGGGGGGGAACGTGGCTGCACGCGTGTACCGGTGGACAAGA
GCGACTTGGTGATGCGCGATGGCAAGGGGGACTACAGCTTGGTGCCCGAT
CTTTTAGTGCGCGACTTTTACGTGACGAAGAAGAAGAAGGAGGAAGCGCT
TTTCTGGCCAGTCCGGCGGATCGTGGATGGAGAGACGGAGTACAAACACG
TGCACGTCCACGACGGCGAGCGTCCCTGCGGGGACTGCGTGCGGATAAAA
CCGAACGCTTTCAACGTCTCACTGCGGTGCGAGTGCCGCGACTGCAAACG
CAAGCCGTTTGACAGCTCTTCGCGGGTCCCTTTCAACCCGCGTGACCTGC
TGGGGCGGGACGGGCGAGGGGATTTCTGCTTGGTGCCCGACCACGAAGTC
CTCGCCCTCTGCTTTCACGACGAGACCACGGCGAAGGAGAACAACGACGG
CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGGCGCATTGGTGGGT
GAGCACGTTGCCCTGAGGCCAGGGGGAGCGCAGGGCACTCTTCGCAATTT
CGAGGACGACGAGGGGAACCCCGTGCACGCCACCTTCAGGGTCGGCGACA
AGCTCCGTTTTACCACGAACGTGTTTGCCCCGAAAACGGAGGAGTAGCTC
GAAGCGGAAAAGAAAGCGGCAGAGGAGGCGGAGGAGAAGGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGT
GAAGAAATCCAAGAAGAACGGCAAGAACCTCGGGAAGTTCAAGAAGGGCG
ACGAGGTCAAGGCGACTGGCCCCACCGCCGTTCGCATCGGCCTGCCAAAA
GGAGGAAAGCAGCTGCTCATGGAGATGGGGCTGTGGGAAGGCGAGCCAAC
CCTACGCGTTCACGAGTGCAGCGCGTGCAGGGCGGAAAAGGCGGCAACAA
GGCAAGCCATTACCGCCTTCAACCGCGGTGGAGAGGGGCGGCAGCAGGTG
GTGGACAACACGGGGCAGGGAGAGGAGGACGGCGGAGAGGACGGGGACTC
GGGTGGGAGCGGGGCAGCTGATGAAGCAGGCAAGAGGCGTCGCTGCTGCG
TCGTGCGCGCGTTCTGTCTGTGCTCAAGGCGT

protein sequence of EsuBft3555_4a-0001

>EsuBft3555_4 ID=EsuBft3555_4|Name=EsuBft3555_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=254bp
MLILRKMMSIPVQVETVTMARVRDAPEGGGASTGGGDDDDVVEGWATGSD
PLFWPAVRSTADGKEDVKHVLVHGELRAEGGERGCTRVPVDKSDLVMRDG
KGDYSLVPDLLVRDFYVTKKKKEEALFWPVRRIVDGETEYKHVHVHDGER
PCGDCVRIKPNAFNVSLRCECRDCKRKPFDSSSRVPFNPRDLLGRDGRGD
FCLVPDHEVLALCFHDETTAKENNDGXXXXXXXXXXXXXXXXXXXXXXXX
XXXX

mRNA from alignment at Scaffold_211:11088..15184+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3555_4a-0001 ID=EsuBft3555_4a-0001|Name=EsuBft3555_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4097bp|location=Sequence derived from alignment at Scaffold_211:11088..15184+ (Ectocarpus subulatus male Bft15b)
CCCGGCGGGAGTACGTGGCGAAGATGCTCATCCTGCGAAAGATGATGTCC
ATGTGAGTGGCGCGGAGAGACTGGCCCGGGGCAGTCTCCTACTTGCGGCA
AATAGTCGTTCAAGGGCAGGCGGAGACAAGCTGTTTGTTGTTTTTTGTCC
TCTAGCGTCGTTCAGTGCCTTGCACGACCAAACCAGACTGCCAGAGTTGA
GCTTGATACCGCGCCGCTACCTGGTACTTTTTTTTTCTCTTGGTGGGTTG
GCACGTTCCTGTACGTGGTTGCTGGTGATGAAAATCGCCGGAAAACTAGA
ATCGTGGCGTGCTTCTTTCACCGCACTGCTGTAGAGGATAAACGTAGTCT
CCCTTGTGATCCCCTGACCCCCAAAAATCGACCGGCCAGTAATCAAAAGC
TTGGACCCCGGGAGGATCGTTGAAAAAAAAACTCCCCCCTCTCGTCCATT
TTTTTTGTTCCCCCGGCAGAGCGATGAAAAAGGAAACAGCAGCAGGGTTC
CACCCGCCGGGACCACCAAGCAAATAGCGGTGTTCTTGAAGTACATGGTA
GCTTTGTCTCGATCGTCTCGTTCGACAACCGCGACACACGTACCAACATT
TTTTTTTGTCTTTTTTCCCCGTGTGTGTTGACAGCCCCGTCCAGGTAGAA
ACTGTGACGATGGCGAGAGTACGCGACGCGCCCGGACGGGGGGGCGCATC
TACTGGGGGAGGCGACGACGACGACGTCGTCGTTGAGGGATGGGCAACCG
GTTCGGACCCGTTGTTCTGGCCAGCAGTTTGAAGCACGGCGGACGGCAAG
GAGGACGTCAAGCACGTGCTAGTTCACGGCGAACTTCGGGCCGAGGGGGG
GAAACGTGGCTGCACGCGTGTACCGGTGGACAAGAGCGACTTGGTGATGC
GCGATGGCAAGGGGGACTACAGCTTGGTGCCCGATCTTCAAGTGCGCGAC
TTGTACGTGGCGAAGAAGAAGAAGGAGGAAGCGCTTTTCTGGCCAGCCCG
GCGGATCGTGGATGGAGAGACGGAGTACAAACACGTGCACGTCCACGACG
GCGAGCGTCCCTGCGGGGACTGCGTGCGGATAAAACCGAACGCTCTCAAC
GTCTCACTGCGGTGCGAGTGCCGCGACTGCAAACGCAAGCCGCTTGACAG
CTCTTCGCGGGTCCCTTTCAACCCGCGTGACCTGCTGGGGCGGGACGGGC
GAGGGGAGTGAAGCACTCATCGTTCCCATGTTGACGTCGTTGCCTTCAGG
ATTGAGAAAGGTGTCAACAAGATGCGGCCCAGCCGCTACGTCGGAGATGT
GGTGAAAACCACAGCGCAGACGGTGCGCAAGTGGGTAAAGGAGTTCTGCC
AAGACGGAAAATTTCTCATCAGAAAACGACTTTACGAGATAAGCCAGGCG
GACTCCTTCATCGACCATGAGGACATCGCCGAGCGTTGCCGGGAGGAAAT
CGACCGGCGGCTTTACCGCCGGAAGAAAACGGATCCGCGGTTTGGTGTCT
CGGACTTTCCGAGTTAAGGGGACGGACGTGAAAATGAGAGAGCGCGCGGT
TAGTGTTCCTGTTGGGTTGAACGGCGTTGGTTTTGTGTTCGTCTTGTGTT
CGCCCGTGTGTTGTGGATACATGTAGACTAATTTCTCCAACTCTCTTCTG
TTACCGCTTTCCTCTCCACTGCAAAATAGGTGGGTGAACACTGTTCTTCT
GCAAGAAATGTTTTCCGGCGGAGGAGGCATCTCTCGGACAACGGCGCACA
GCTGGATCTGCAGACTCGGCTTCAGAAGAGCGGGAAGTGCGTCTACGTCG
ATGGCCACAACCGCCCGGATGTCGTCGAGGCCCGGCGGGAGTACGTGGCG
AAGATGCTCATCCTGCGAAACATGATGTCCATGTGAGTGGCGCGAAGAGA
CTGGCCCGGGGCAGGCTCCTACTTGCGGCAAGTAGTCGTTCAAGGGCAGG
CGGAGACAAGCTGTTTGTTGTTTTTTGTCCTCTAGCGTCGTTCAGTGCCT
TGCACGACCAAACCAGACTGCCAGAGTTGAGCTTGATACCGCGCCGCTAC
CTGGTACTTTTTTTTTTCTCTTGGTGGGTTGGCACGTTCCTGTACGTGGT
TGCTGGTGATGAAAATCACCGGAAAACTATAATCGTGGCGTGCTTCTTTC
ACCGCACTGCTGTACAGGATAAACGTAGTCTCCCTTGTGATCCCCCGACC
CCCAAAAATCGACCGGCCAGTAATCAAAAGCTTGGACCCCGGGAGGATCG
TTGAAAAAAAAAAACTTCCCCCTCTCGTCCATTTTTTTTGTTCCCCCGGC
AGAGCGATGAAAAAGGAAACAGCAGCAGTGTTCCCCCCGCCGGGACCACC
AAGCAAATAGCGGTGTTCTTGAAGTACATGGTAGCTTTGTCTCGATCGTC
TCGTTCGACAACCGCGACACACGTACCAACATTTTTTTTTGTCTTTTTTC
CCCGTGTGTGTTGACAGCCCCGTCCAGGTAGAAACTGTGACGATGGCGAG
AGTACGCGACGCGCCCGAAGGGGGGGGCGCATCTACTGGGGGAGGCGACG
ACGACGACGTCGTTGAGGGATGGGCAACCGGTTCGGACCCGCTGTTCTGG
CCAGCAGTTCGAAGCACGGCGGACGGCAAGGAGGACGTCAAGCACGTGCT
AGTTCACGGCGAACTTCGGGCCGAGGGGGGGGAACGTGGCTGCACGCGTG
TACCGGTGGACAAGAGCGACTTGGTGATGCGCGATGGCAAGGGGGACTAC
AGCTTGGTGCCCGATCTTTTAGTGCGCGACTTTTACGTGACGAAGAAGAA
GAAGGAGGAAGCGCTTTTCTGGCCAGTCCGGCGGATCGTGGATGGAGAGA
CGGAGTACAAACACGTGCACGTCCACGACGGCGAGCGTCCCTGCGGGGAC
TGCGTGCGGATAAAACCGAACGCTTTCAACGTCTCACTGCGGTGCGAGTG
CCGCGACTGCAAACGCAAGCCGTTTGACAGCTCTTCGCGGGTCCCTTTCA
ACCCGCGTGACCTGCTGGGGCGGGACGGGCGAGGGGATTTCTGCTTGGTG
CCCGACCACGAAGTCCTCGCCCTCTGCTTTCACGACGAGACCACGGCGAA
GGAGAACAACGACGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCC
GGCGCATTGGTGGGTGAGCACGTTGCCCTGAGGCCAGGGGGAGCGCAGGG
CACTCTTCGCAATTTCGAGGACGACGAGGGGAACCCCGTGCACGCCACCT
TCAGGGTCGGCGACAAGCTCCGTTTTACCACGAACGTGTTTGCCCCGAAA
ACGGAGGAGTAGCTCGAAGCGGAAAAGAAAGCGGCAGAGGAGGCGGAGGA
GAAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGGTGAAGAAATCCAAGAAGAACGGCAAGAACCTCGGGA
AGTTCAAGAAGGGCGACGAGGTCAAGGCGACTGGCCCCACCGCCGTTCGC
ATCGGCCTGCCAAAAGGAGGAAAGCAGCTGCTCATGGAGATGGGGCTGTG
GGAAGGCGAGCCAACCCTACGCGTTCACGAGTGCAGCGCGTGCAGGGCGG
AAAAGGCGGCAACAAGGCAAGCCATTACCGCCTTCAACCGCGGTGGAGAG
GGGCGGCAGCAGGTGGTGGACAACACGGGGCAGGGAGAGGAGGACGGCGG
AGAGGACGGGGACTCGGGTGGGAGCGGGGCAGCTGATGAAGCAGGCAAGA
GGCGTCGCTGCTGCGTCGTGCGCGCGTTCTGTCTGTGCTCAAGGCGT

Coding sequence (CDS) from alignment at Scaffold_211:11088..15184+

>EsuBft3555_4a-0001 ID=EsuBft3555_4a-0001|Name=EsuBft3555_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=762bp|location=Sequence derived from alignment at Scaffold_211:11088..15184+ (Ectocarpus subulatus male Bft15b)
ATGCTCATCCTGCGAAAGATGATGTCCATCCCCGTCCAGGTAGAAACTGT
GACGATGGCGAGAGTACGCGACGCGCCCGAAGGGGGGGGCGCATCTACTG
GGGGAGGCGACGACGACGACGTCGTTGAGGGATGGGCAACCGGTTCGGAC
CCGCTGTTCTGGCCAGCAGTTCGAAGCACGGCGGACGGCAAGGAGGACGT
CAAGCACGTGCTAGTTCACGGCGAACTTCGGGCCGAGGGGGGGGAACGTG
GCTGCACGCGTGTACCGGTGGACAAGAGCGACTTGGTGATGCGCGATGGC
AAGGGGGACTACAGCTTGGTGCCCGATCTTTTAGTGCGCGACTTTTACGT
GACGAAGAAGAAGAAGGAGGAAGCGCTTTTCTGGCCAGTCCGGCGGATCG
TGGATGGAGAGACGGAGTACAAACACGTGCACGTCCACGACGGCGAGCGT
CCCTGCGGGGACTGCGTGCGGATAAAACCGAACGCTTTCAACGTCTCACT
GCGGTGCGAGTGCCGCGACTGCAAACGCAAGCCGTTTGACAGCTCTTCGC
GGGTCCCTTTCAACCCGCGTGACCTGCTGGGGCGGGACGGGCGAGGGGAT
TTCTGCTTGGTGCCCGACCACGAAGTCCTCGCCCTCTGCTTTCACGACGA
GACCACGGCGAAGGAGAACAACGACGGCANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNN