EsuBft1205_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1205_11a-0001
Unique Name	EsuBft1205_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_210	contig	Scaffold_210:188617..190549 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1205_11
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	177
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1205_11a	EsuBft1205_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_210 188617..190549 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1205_11a-0001	EsuBft1205_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_210 190022..190297 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1205_11a-0001-exon	EsuBft1205_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_210 188617..189024 -
EsuBft1205_11a-0001-exon	agat-exon-37503	Ectocarpus subulatus male Bft15b	exon	Scaffold_210 189183..190549 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1205_11a-0001-exon	agat-three_prime_utr-1961	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_210 188617..189024 -
EsuBft1205_11a-0001-exon	agat-three_prime_utr-1962	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_210 189183..190021 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1205_11a-0001-cds	EsuBft1205_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_210 190022..190297 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1205_11a-0001-exon	agat-five_prime_utr-1287	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_210 190298..190549 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_210:188617..190549-
coding sequence from alignment at Scaffold_210:188617..190549-

spliced messenger RNA

>EsuBft1205_11a-0001 ID=EsuBft1205_11a-0001|Name=EsuBft1205_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1775bp|location=Sequence derived from alignment at Scaffold_210:188617..190549- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCGTGGCGAGGGGGCGGTTGACGTGACCGTCTAGAAGGTCGTGGGTGGC
GAGACCAAGTTAGACTTGTGGATGAACAGAGTGTTCACCAGCATCTGCGA
ACTCCAGGATGGAAGCGAGTCCGCGCGGCCGCCATTGACCTTCAGGGGCT
GTATCCCCACGGACAAATGACAAGGTCCGTCTGTTCGTCCTAACGTTCCT
GGAGCCGGGCTGTGACTACCTCCCGGCAATTTCCGGGCTGCCGTTCGACA
AGATGTGGGTACTGGCCCTCAAGAGCGTGCGAACGGAGGGTTTATTTGAC
AAGCCGCTGTTCTTCGAGGAGCAGCATGGTACGTGGGCCGTGGAAGTCGA
CGAATGCGCGAAGCTTTTGGCGACCATGTTCTTCTACAAGGATGAAGCGG
CAATTGGCACTGCTCATTTGACTCCAGCACAGCTGGTCGAAAGCGTTGAC
GGCGACGTCGAGGGCTACGTGGACGTGATCCGCTACGCCATCCTCCAACT
CCCCAAGAAGAAGACGACAGCCACCTGACCGTCCTTTTTTTCCTTGCGCA
AGCAGGCAGAACGAGGTAACGCCATTATCCGGTACTGGCAGAATGGCCTG
AGGGACACCATGCCGGTGACAGAGTTTGCCGGCGAAGGATGGAGCGTCGA
CCCACGAGGAAAGGGGAGCGACGGCGACGAACTCACAAAGGAGAACTGCG
TGCTTGACCTGTCCGAGTATGCTTACATCGCCCCTGACCGAAAGACAGTG
ACGCTAGCGTGTGTTTGCAATCCGGACACGGCCCTGTGCAACAGGTGCAG
GTGCAAGAACAAGAAGTGCTCGCTCGCTTGCGGCTGCAGAAATCGTTGCA
CCCTACGGCGGGCGGTGCCGGCACCCGTGCGAGCAGGGGGGAGGTCTGCG
TCACGGCCTACAGTGGGTGCTCCTCAAACGAGGCGGGTAGAGGGCACCTC
CCGACCCCAACCGCCCATCGAGAGTCGACCACGGCCATCCTACAGTGTTG
CCAATGCCATGGCACTCTTTGCCGCCTCTTTGAGGCACCAGGTATCGCAC
GGAGCGGAACAGAACGACGTGGAGGCGGGAACCCCCGAGTCGCCTGCGAG
CAACGACGTTTCCGCCGGCGAGGCCGCGGAATCTAAAAACGCAGAGTTGG
AGGACCCCGAGTCGGACGAGAAGTGCGACGGTTCGGTCGGTGCACTCGAC
GATTTGATCCAGTTGGATTCGAGCGAATCTGGTTCCAGCGATGGGGAATC
TGACGGGGTGAGCGAGAAGAGCGTCGATTCCAACTGGAGTGGCGGAGACA
CAGATGATGGTGTTGCGGATCTCGTAACCGACGCCTGGAACTGAGATCTG
GCTACTTCTTCAGGCAGGTCCGTCCGTGCTTGACTTCCGTTGGATACATC
CATCCACGAAATACGACGACCCGGGGTACGAGATATCAGACGGACGAACT
TCAGCCTAATACTGAAAAGCCGGCTAGGGCGCGCGTTTCCGCCCTCGGCG
AATTTTCGTTCCTAATAGTTGCGCACGTAGTTGCGCAGGGAGGTGGACCG
GGGGGGGGTATTATTCTTCGCCCAAACCGGGTGTCCGTTGTTTATTGGTG
TGGTATTCTGTTCTCCGCGTTTTTCCGGCAGACTGCCGGAAACGTATTGT
TGGGGTGCTGTGTGCGTTGGCCCGGTATTGTGTGCGGTGTTCGTGTGTAA
GTATTTCCGGCGTTTTCGCCACACCCAATGCTCAGGGCGTCCTCATGTAC
ATCGAGACAAGTACTTCAATGTGTA

protein sequence of EsuBft1205_11a-0001

>EsuBft1205_11 ID=EsuBft1205_11|Name=EsuBft1205_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=91bp
MWVLALKSVRTEGLFDKPLFFEEQHGTWAVEVDECAKLLATMFFYKDEAA
IGTAHLTPAQLVESVDGDVEGYVDVIRYAILQLPKKKTTAT

mRNA from alignment at Scaffold_210:188617..190549-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1205_11a-0001 ID=EsuBft1205_11a-0001|Name=EsuBft1205_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1933bp|location=Sequence derived from alignment at Scaffold_210:188617..190549- (Ectocarpus subulatus male Bft15b)
CTCGTGGCGAGGGGGCGGTTGACGTGACCGTCTAGAAGGTCGTGGGTGGC
GAGACCAAGTTAGACTTGTGGATGAACAGAGTGTTCACCAGCATCTGCGA
ACTCCAGGATGGAAGCGAGTCCGCGCGGCCGCCATTGACCTTCAGGGGCT
GTATCCCCACGGACAAATGACAAGGTCCGTCTGTTCGTCCTAACGTTCCT
GGAGCCGGGCTGTGACTACCTCCCGGCAATTTCCGGGCTGCCGTTCGACA
AGATGTGGGTACTGGCCCTCAAGAGCGTGCGAACGGAGGGTTTATTTGAC
AAGCCGCTGTTCTTCGAGGAGCAGCATGGTACGTGGGCCGTGGAAGTCGA
CGAATGCGCGAAGCTTTTGGCGACCATGTTCTTCTACAAGGATGAAGCGG
CAATTGGCACTGCTCATTTGACTCCAGCACAGCTGGTCGAAAGCGTTGAC
GGCGACGTCGAGGGCTACGTGGACGTGATCCGCTACGCCATCCTCCAACT
CCCCAAGAAGAAGACGACAGCCACCTGACCGTCCTTTTTTTCCTTGCGCA
AGCAGGCAGAACGAGGTAACGCCATTATCCGGTACTGGCAGAATGGCCTG
AGGGACACCATGCCGGTGACAGAGTTTGCCGGCGAAGGATGGAGCGTCGA
CCCACGAGGAAAGGGGAGCGACGGCGACGAACTCACAAAGGAGAACTGCG
TGCTTGACCTGTCCGAGTATGCTTACATCGCCCCTGACCGAAAGACAGTG
ACGCTAGCGTGTGTTTGCAATCCGGACACGGCCCTGTGCAACAGGTGCAG
GTGCAAGAACAAGAAGTGCTCGCTCGCTTGCGGCTGCAGAAATCGTTGCA
CCCTACGGCGGGCGGTGCCGGCACCCGTGCGAGCAGGGGGGAGGTCTGCG
TCACGGCCTACAGTGGGTGCTCCTCAAACGAGGCGGGTAGAGGGCACCTC
CCGACCCCAACCGCCCATCGAGAGTCGACCACGGCCATCCTACAGTGTTG
CCAATGCCATGGCACTCTTTGCCGCCTCTTTGAGGCACCAGGTATCGCAC
GGAGCGGAACAGAACGACGTGGAGGCGGGAACCCCCGAGTCGCCTGCGAG
CAACGACGTTTCCGCCGGCGAGGCCGCGGAATCTAAAAACGCAGAGTTGG
AGGACCCCGAGTCGGACGAGAAGTGCGACGGTTCGGTCGGTGCACTCGAC
GATTTGATCCAGTTGGATTCGAGCGAATCTGGTTCCAGCGATGGGGAATC
TGACGGGGTGAGCGAGAAGAGCGTCGATTCCAACTGGAGTGGCGGAGACA
CAGATGATGGTGTTGCGGATCTCGTAACCGACGCCTGGAACTGAGATCTG
GCTACTTCTTCAGGCAGGTACATATATCGTTCCTTGGGATTGGGGTTGGG
GATGTCGTGCCCGCCATTATTGCACGTCAGATCTCCACGTCGTAACGAAA
GATCGTGTGGTCTGATTTATGCTTACTCCATGTTTCAACGACATACTTCG
CGCGTCTTTGTTGATGGTTGAACAGGTCCGTCCGTGCTTGACTTCCGTTG
GATACATCCATCCACGAAATACGACGACCCGGGGTACGAGATATCAGACG
GACGAACTTCAGCCTAATACTGAAAAGCCGGCTAGGGCGCGCGTTTCCGC
CCTCGGCGAATTTTCGTTCCTAATAGTTGCGCACGTAGTTGCGCAGGGAG
GTGGACCGGGGGGGGGTATTATTCTTCGCCCAAACCGGGTGTCCGTTGTT
TATTGGTGTGGTATTCTGTTCTCCGCGTTTTTCCGGCAGACTGCCGGAAA
CGTATTGTTGGGGTGCTGTGTGCGTTGGCCCGGTATTGTGTGCGGTGTTC
GTGTGTAAGTATTTCCGGCGTTTTCGCCACACCCAATGCTCAGGGCGTCC
TCATGTACATCGAGACAAGTACTTCAATGTGTA

Coding sequence (CDS) from alignment at Scaffold_210:188617..190549-

>EsuBft1205_11a-0001 ID=EsuBft1205_11a-0001|Name=EsuBft1205_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=276bp|location=Sequence derived from alignment at Scaffold_210:188617..190549- (Ectocarpus subulatus male Bft15b)
ATGTGGGTACTGGCCCTCAAGAGCGTGCGAACGGAGGGTTTATTTGACAA
GCCGCTGTTCTTCGAGGAGCAGCATGGTACGTGGGCCGTGGAAGTCGACG
AATGCGCGAAGCTTTTGGCGACCATGTTCTTCTACAAGGATGAAGCGGCA
ATTGGCACTGCTCATTTGACTCCAGCACAGCTGGTCGAAAGCGTTGACGG
CGACGTCGAGGGCTACGTGGACGTGATCCGCTACGCCATCCTCCAACTCC
CCAAGAAGAAGACGACAGCCACCTGA