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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 1552758.NC00_15540 |
| ProteomeId | EsuBft1205_9 |
| Protein domains | IPR007621 |
| Protein domains | SSF57850 |
| Protein domains | IPR013083 |
| Protein domains | PTHR30373 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 135614|Xanthomonadales |
| Length | 265 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.34e-08 |
| EggNOG OGs | COG1512@1|root,COG1512@2|Bacteria,1PB41@1224|Proteobacteria,1S7CA@1236|Gammaproteobacteria,1X5J5@135614|Xanthomonadales |
| Ec32 ortholog description | Zinc finger, RING/FYVE/PHD-type |
| Ec32 ortholog | Ec-09_003760.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K06872 |
| Description | Beta-propeller domains of methanol dehydrogenase type |
| COG category | S |
| BRITE | ko00000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1205_9a-0001 ID=EsuBft1205_9a-0001|Name=EsuBft1205_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2657bp|location=Sequence derived from alignment at Scaffold_210:164576..169661- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TCGAGGGCGGGGTGGCGGTCGTATCGCGCATGCTCGCGTCTCCCCCGAGA GGAGGGGCAGGGGGAGGAGGAGTCGGGATCAACGTTCTTAACAAGGGGGG CGGTGTAGTTGGTGGAGGCGAAGAGGTGACGGCGGAGGGGTTTGCACGAG GCGTGCAGGATGGCTGGAGGGTGGGGAAACGGGGCTGCGATAACGGTTTC GTGCTGGTGGCTTCTCGAGAGGACAGAAGTTTCGCCATTTCAGTGGGCAA GGGTCTGGAGCGGTACCTCCCTCCGAGAGACCGCAACGCGGCTCTGAACG CGATGAAGCCGCTGCTGCGCGAGGGCGACTGGGACGGCGCCGTTCTGCTT GGGCTGGAAGAGATCCACCGCCGCCTGTTCGAGAACCTTGCAAAGGCAGC CGGCGGCGGCGACGGCGGCGCGGGGGCTTTGTCCTCTCTTGGATGGGGCT GGGAAGACCTGAAGCGACGGGCGTCGGGCGGGTGGGGGGGTAGCGGGGGC GGCGGTGGTAGCGGCGATGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGG CTTCCGTGGCTTCCATCTCGGTGGCTTCGAGAATTCGTTTGGTGAGAACT GGAAGCTGGACGTCCCCCCTGGCTCCGTGCTGCTGGCGTTGTCGCTGCTG TGGGGAGGAGCCACCGCACGGGCCTCCCTGCAACGGAGGCGGTACGACAG ATTCGAGGCTAAGCTGGCTGGGATCGAGGCTCAAAGAGCGATGCTGCCGC TTTCAGCCGGCGGCGGTTGGTCGGTCGGGCAAGACGCGTTGGCGTCGCGG GGAGTGTGCCCCATCTGCCTAGACGCCTTCTCGGAAGCGGCGGATGGTAG CGGAGCCGACACCAAGGGGCTGGTGGGCGCGGACCGGATGCCGGCGGCGA CACTGCCTGACTGCGGGCACACCTTCTGCCAAAGGCGACTGCCTATCCCG ATGGAACGGAGACGGAAGCGACTCGAGCAGTGGCAACCCCGAAGCCTGCC CGTGTCCTGTCTGCGATGCCCCCACGCCGGCGGTCGGAGACCCGCGGCTC GGCCGCACGAGTAGACGCCGTCGTGCCCCCCGCCCTGGGCCCCTCCGCCT CCGCCGCCGCCGCCGCCGCCATCGGCCTGGGGAGGAGGACGTTGGTTCCT TTGGGTTCAGGTGGCCTGGCTCGTCTTCCTCTTGGGGGGGGGGAGGGTCC CGTCGCGGTCGTGGAGGAGTAAACCTAAGTTTTTCGCCGTCGCCCCGGTC GAGCGGGTGGACTTCAGACGAACCTCGAGGATTGCTGCCGTCACCGATTG CGCCGCCACCGCCGCCCCCACCGCCGCCGCCGCCACCGCCGCCGCCTTCC ACCCCTCCGCCACCGCCGCCGCCGCCGCCGGTACGGCCTCCAAGGGCGAG CGGAAGTCCCGGTGTGTTGAGGACGGGGAGGTTGGGCAAGACCGGCGGTG ACCAGGCAAGGGAACGGGCGCGGCGGGAGGCCGCGTTTCAGCTAGCCTCG CTGGGGTCTCAGTACCCCAAGCTCTTGGACGATCGGACCGTCAACAGGTG GCTCTCCAAGGATTACTCCTCCAGCTGGAGCAGAGACCCAATGCTCGCGC TGAACCGCCCCCCGGATACCGGCTCTGACAACAGCCGTGTTGGGGGCGGC GGCGCTAGGAAAGGAAGCGGGTGGGTCACCAACGGCTCTAGGGGGCTCGG TGGCGGGGAGAGGCGGTCATACGGCGGCGGCTCTTCGTCCTCCGCTACAG GAGGAGGGTGGTAGAAAACTGTGGTATAATAGAGGTGACGCGTTCGGCAG CAGTAGTTGGGCGGACATTTTTTTTGGCGATGGCGCCTGCGGCTCAACTG TACTCTTCCGTCTCGGTGACAATAAATTTGTGATGAGAGATAACGCGTAC ATTAGTAGTTGGGTGGACAAATTTAGTAACCATGGTACCGGCGGCGGCTT GTTTGAACTCTTGCGTCTCGGCGACATACCGCCGTGTGTCTTCGGCTGTT GTTGTTACCCATGAGAAGCGTTGGGTAGGTCATGCGGCGGGATTCTTGCG TGAATTGACCCACCGTTCGCGAGGCCAACTGTCGTCGGCGAAGGTGTTTG TTGTTGTTGAGGAAGCTATTAATAGCTGCGTTGCAGCTCTCTTCACAGCA GTAGTGGCGTTCATATTGTTGTCGCACGCCGACGCCTCTACCAGAAACCC GTGAAGAGAGGGTTGCAAGCAACGCTTCGCGAATCCTGCGCGCCGACTTC GTTGAACGATGGGCCTAGCGGTTGTGGCAGGCGGCGGTCTAGCTTTCCGG TCAGCTCGGTTTGCTTCGTGTACATATTTCGAGACATAATCAGGTTCCGT GGGATGGGTTGATGGAGGGTCGCTGAAGCAGTGGCGCGAACACGACCATG CGGTGTTGTACATACATAATTTGTCGATACGGAGTACATACGTAAGCAGG TACATAGCGGATTTTGATGGCAGTAGATCATTCCCTGTTAGTGGCTGCAA TCAGGTGTGTGCGTGTAACGTATGATCCGGGAAACTACTTCCTGCGCTTG TGTGTTTTCGTGGCAGTTTCTCCTACAGTAACGTCAAACTGGCGCTTAGA AATACACTTTTTTTTGCCTTGGAGAGCGGTGTGCGCTTCTGCCGCAGCAA ACAACAC back to topprotein sequence of EsuBft1205_9a-0001 >EsuBft1205_9 ID=EsuBft1205_9|Name=EsuBft1205_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=344bp
MLASPPRGGAGGGGVGINVLNKGGGVVGGGEEVTAEGFARGVQDGWRVGK RGCDNGFVLVASREDRSFAISVGKGLERYLPPRDRNAALNAMKPLLREGD WDGAVLLGLEEIHRRLFENLAKAAGGGDGGAGALSSLGWGWEDLKRRASG GWGGSGGGGGSGDGGGGGGGGGGGFRGFHLGGFENSFGENWKLDVPPGSV LLALSLLWGGATARASLQRRRYDRFEAKLAGIEAQRAMLPLSAGGGWSVG QDALASRGVCPICLDAFSEAADGSGADTKGLVGADRMPAATLPDCGHTFC QRRLPIPMERRRKRLEQWQPRSLPVSCLRCPHAGGRRPAARPHE back to topmRNA from alignment at Scaffold_210:164576..169661- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1205_9a-0001 ID=EsuBft1205_9a-0001|Name=EsuBft1205_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5086bp|location=Sequence derived from alignment at Scaffold_210:164576..169661- (Ectocarpus subulatus male Bft15b) TCGAGGGCGGGGTGGCGGTCGTATCGCGCATGCTCGCGTCTCCCCCGAGA
GGAGGGGCAGGGGGAGGAGGAGTCGGGATCAACGTTCTTAACAAGGGGGG
CGGTGTAGTTGGTGGAGGCGAAGAGGTGACGGCGGAGGGGTTTGCACGAG
GCGTGCAGGATGGCTGGAGGGTGGGGAAACGGGGCTGCGATAACGGTTTC
GTGCTGGTGGCTTCTCGAGAGGACAGAAGTTTCGCCATTTCAGTGGTGAG
CTGAACAGCGCGCCGACCGGGGTAGGATTCGGCCCAAAGAAAGAGGCATC
GACCGGACTGGGGGGGGACGTACTCCAACGTTTTGCATGCCTTAGCGGTT
AGACCATTGACCACGCGTCCTCTCGAGAGGACGGAGAATTGTTCCCACAG
GACCATCACCAATCACCGGGGTACTTATTGCCAATCATGCCGTAGTCGTT
AGACCATTGGTCTCGCGTCCCTGCCAAGCCGGGACGGAGCACGCCTGGTT
TAACCGGACCGGGGAAGAAATTGTACGCGGTTGTGCACCAAACCCCTCCT
CCGGGCGTTCTCTTTCGTGGCCCTTCTTTAGCATGCCTGTGCACGTGAAC
TCCGTTGGCAAGTAGCCCTTTGGCTCTTGTTTTTCGTCATGTCGATGCAT
CCCAATCTGTTGCCTGCGATCTCTACCGCTGCACATAGCGGTCGCTGGGT
GGCCTGCGGTAGACAAGCTACCGCGGTCAACACTACACATCTCGTCCCCT
CTCCTCCTTCGCACACTGCTTTGCGAGGGGGCGAAAAAACACCACACCGA
AGCAGGCGCTCAAGCAAACGCGTGTCGTTGAACACTAAGTCATGGTGCTG
TTGGGTACTTTCGCCCAAGGTCAATGTTCCCACCACAACGGTATGTAAAA
CATGAGTGGCTTCGTCCTCTCGAGGGCTCGTGGTCTACCCGCGAAGGCAT
GCAAAACATGAAATCAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCCCCCCCCCCCCCCCCCCCCCGCCTATGCGCTACGGTCGGCCTTGC
ACGATACAGGGCAAGGGTCTGGAGCGGTACCTCCCTCCGAGAGACCGCAA
CGCGGCTCTGAACGCGATGAAGCCGCTGCTGCGCGAGGGCGACTGGGACG
GCGCCGTTCTGCTTGGGCTGGAAGAGATCCACCGCCGCCTGTTCGAGAAC
CTTGCAAAGGCAGCCGGCGGCGGCGACGGCGGCGCGGGGGCTTTGTCCTC
TCTTGGATGGGGCTGGGAAGACCTGAAGCGACGGGCGTCGGGCGGGTGGG
GGGGTAGCGGGGGCGGCGGTGGTAGCGGCGATGGCGGTGGCGGTGGCGGT
GGCGGTGGCGGTGGCTTCCGTGGCTTCCATCTCGGTGGCTTCGAGAATTC
GTTTGGTGAGAACTGGAAGCTGGACGTCCCCCCTGGCTCCGTGCTGCTGG
CGTTGTCGCTGCTGTGGGGAGGAGCCACCGCACGGGCCTCCCTGCAACGG
AGGCGGTACGACAGATTCGAGGCTAAGCTGGCTGGGATCGAGGCTCAAAG
GTGCGCGGGCTTGCGCGTGGCCGCAGCAGTCGTCTTGATGTTGTGTGGTG
GTGCTCGGTACAGCTTGCTTGCACTTGGCGCTAAAGGAAAAAAAAAACAC
AGGAGAAACAGCAGTCAAAGTGTTACACATTGGAGTGTTGGTGCTGATAG
CTTTTGGCTTCGAGAGGCGACGAAATGGGGGGAGCGCTTGTCCTTTGGAT
CTGGCGTGTGGGGCTGCTGCCAGGAGTCTTTACCTATCGCCGCCAGAGGC
GAGGAAAGGTCAGCTATCGCTGCAAATGGCGGGGAGGTTGATGCCGAAAA
TTACAGCGGCATTCTTAGGGCGAGGGGCAACAGACCAAGAAGTGACGCCC
GTTTTTCCCCCTTCTTCGTCGTTTTTCTTGCCATCTTCGTTATCCCTCTC
AAGTTATTGAACGCATCGGTACTTCAGCTTGTTTTAGCCCTCGCTCTTCG
TTTGTCACACGCGCCCTTGCGCCCGTTGATTGCCCTACGTCTCAGAGCGA
TGCTGCCGCTTTCAGCCGGCGGCGGTTGGTCGGTCGGGCAAGACGCGTTG
GCGTCGCGGGGAGTGTGCCCCATCTGCCTAGACGCCTTCTCGGAAGCGGC
GGATGGTAGCGGAGCCGACACCAAGGGGCTGGTGGGCGCGGACCGGATGC
CGGCGGCGACACTGCCTGACTGCGGGCACACCTTCTGCCAAAGGCGAGTG
GCTCAGCCTCTGATGATGGAGGACCGCGTGTTCGCGAGAAAATAAAATGA
TGAGGAAACAGAATAGGGAGGGGGTACGCAGACCATAAACCCTACCCGTA
AACCTAACTCAGCTTCCTCAATCGCACACTTTATCCAACATGCTTTTTTC
GTAGAGAAAACGTGCGAATGCTACTGGGTGACAAATGCCCCCTCGTGGTC
GTCGTGAAAGAGTATTTTTGACAGAATCTAGCACATATGAACACGTGGGT
TTCGGGGGGGGATTCCCTCGCCTTGTGACTGCTATACGTGTATCTGTCTT
TTTGGTGTGGTCATCACGCTATCTAGTTTTCAAGCGTTTGAATAAGGACG
CCCCGTGTGTCATCAAGGTACTCTAGTGAAGGAGGTCCACGAACCCTCCC
CGATTGGTGGCGACCGCCCTCACCAGACCGCCCCCCTTTGTCACGACCCC
TCCCCATCCCACCTTTCCCTGGGGCGGAGAACAGCTGCCTATCCCGATGG
AACGGAGACGGAAGCGACTCGAGCAGTGGCAACCCCGAAGCCTGCCCGTG
TCCTGTCTGCGATGCCCCCACGCCGGCGGTCGGAGACCCGCGGCTCGGCC
GCACGAGTAGACGCCGTCGTGCCCCCCGCCCTGGGCCCCTCCGCCTCCGC
CGCCGCCGCCGCCGCCATCGGCCTGGGGAGGAGGACGTTGGTTCCTTTGG
GTTCAGGTGGCCTGGCTCGTCTTCCTCTTGGGGGGGGGGAGGGTCCCGTC
GCGGTCGTGGAGGAGTAAACCTAAGTTTTTCGCCGTCGCCCCGGTCGAGC
GGGTGGACTTCAGACGAACCTCGAGGATTGCTGCCGTCACCGATTGCGCC
GCCACCGCCGCCCCCACCGCCGCCGCCGCCACCGCCGCCGCCTTCCACCC
CTCCGCCACCGCCGCCGCCGCCGCCGGTACGGCCTCCAAGGGCGAGCGGA
AGTCCCGGTGTGTTGAGGACGGGGAGGTTGGGCAAGACCGGCGGTGACCA
GGCAAGGGAACGGGCGCGGCGGGAGGCCGCGTTTCAGCTAGCCTCGCTGG
GGTCTCAGTACCCCAAGCTCTTGGACGATCGGACCGTCAACAGGTGTGGC
CCCTCCTCGTATTATTTGCATGTGTGTGTTAGCCTTGCACCCCGGCATAG
CGAACTTGTGTCCAATCGTACCTTACGCTGCTTGCTACGAAAAAGTAAGC
TACTCCACCTTATTTCCGCGAAACCTTTTGTGTTTTTTTTCTGTTCGTGC
GTTTCTCTGTCTGTACTCTCTCTGGTTCGATGCGCTTGAGATGCCTTGTA
AGCAGCTCCATCGAGCTGAAGAAAATAGCTTGAGAAGAATAGCCATATTG
GTTCGATGATCCACATCGCTATGTACGTGTGTTTGGGGTGTCGGCGCGCG
TACTACGTTATCACGTTCGCGGGCTCTTGTCGAGAGCGTTTCTGCACAAA
GGTGTGCCTCAAGTTCCTTGTATGAACGAGTGAGAGACAAGGGCAAGGCC
AAAAGAGCCTAGCGCGTCAAGCCCCATGATACCCATCACATGTAACTCCC
GGAGATCTGGGAGATCCATATCCTGCCGAGCACACGCACAAATGACGTAC
ATACATCGTGCGCTTACCTTGCACAGGTGGCTCTCCAAGGATTACTCCTC
CAGCTGGAGCAGAGACCCAATGCTCGCGCTGAACCGCCCCCCGGATACCG
GCTCTGACAACAGCCGTGTTGGGGGCGGCGGCGCTAGGAAAGGAAGCGGG
TGGGTCACCAACGGCTCTAGGGGGCTCGGTGGCGGGGAGAGGCGGTCATA
CGGCGGCGGCTCTTCGTCCTCCGCTACAGGAGGAGGGTGGTAGAAAACTG
TGGTATAATAGAGGTGACGCGTTCGGCAGCAGTAGTTGGGCGGACATTTT
TTTTGGCGATGGCGCCTGCGGCTCAACTGTACTCTTCCGTCTCGGTGACA
ATAAATTTGTGATGAGAGATAACGCGTACATTAGTAGTTGGGTGGACAAA
TTTAGTAACCATGGTACCGGCGGCGGCTTGTTTGAACTCTTGCGTCTCGG
CGACATACCGCCGTGTGTCTTCGGCTGTTGTTGTTACCCATGAGAAGCGT
TGGGTAGGTCATGCGGCGGGATTCTTGCGTGAATTGACCCACCGTTCGCG
AGGCCAACTGTCGTCGGCGAAGGTGTTTGTTGTTGTTGAGGAAGCTATTA
ATAGCTGCGTTGCAGCTCTCTTCACAGCAGTAGTGGCGTTCATATTGTTG
TCGCACGCCGACGCCTCTACCAGAAACCCGTGAAGAGAGGGTTGCAAGCA
ACGCTTCGCGAATCCTGCGCGCCGACTTCGTTGAACGATGGGCCTAGCGG
TTGTGGCAGGCGGCGGTCTAGCTTTCCGGTCAGCTCGGTTTGCTTCGTGT
ACATATTTCGAGACATAATCAGGTTCCGTGGGATGGGTTGATGGAGGGTC
GCTGAAGCAGTGGCGCGAACACGACCATGCGGTGTTGTACATACATAATT
TGTCGATACGGAGTACATACGTAAGCAGGTACATAGCGGATTTTGATGGC
AGTAGATCATTCCCTGTTAGTGGCTGCAATCAGGTGTGTGCGTGTAACGT
ATGATCCGGGAAACTACTTCCTGCGCTTGTGTGTTTTCGTGGCAGTTTCT
CCTACAGTAACGTCAAACTGGCGCTTAGAAATACACTTTTTTTTGCCTTG
GAGAGCGGTGTGCGCTTCTGCCGCAGCAAACAACAC back to topCoding sequence (CDS) from alignment at Scaffold_210:164576..169661- >EsuBft1205_9a-0001 ID=EsuBft1205_9a-0001|Name=EsuBft1205_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1035bp|location=Sequence derived from alignment at Scaffold_210:164576..169661- (Ectocarpus subulatus male Bft15b) ATGCTCGCGTCTCCCCCGAGAGGAGGGGCAGGGGGAGGAGGAGTCGGGAT CAACGTTCTTAACAAGGGGGGCGGTGTAGTTGGTGGAGGCGAAGAGGTGA CGGCGGAGGGGTTTGCACGAGGCGTGCAGGATGGCTGGAGGGTGGGGAAA CGGGGCTGCGATAACGGTTTCGTGCTGGTGGCTTCTCGAGAGGACAGAAG TTTCGCCATTTCAGTGGGCAAGGGTCTGGAGCGGTACCTCCCTCCGAGAG ACCGCAACGCGGCTCTGAACGCGATGAAGCCGCTGCTGCGCGAGGGCGAC TGGGACGGCGCCGTTCTGCTTGGGCTGGAAGAGATCCACCGCCGCCTGTT CGAGAACCTTGCAAAGGCAGCCGGCGGCGGCGACGGCGGCGCGGGGGCTT TGTCCTCTCTTGGATGGGGCTGGGAAGACCTGAAGCGACGGGCGTCGGGC GGGTGGGGGGGTAGCGGGGGCGGCGGTGGTAGCGGCGATGGCGGTGGCGG TGGCGGTGGCGGTGGCGGTGGCTTCCGTGGCTTCCATCTCGGTGGCTTCG AGAATTCGTTTGGTGAGAACTGGAAGCTGGACGTCCCCCCTGGCTCCGTG CTGCTGGCGTTGTCGCTGCTGTGGGGAGGAGCCACCGCACGGGCCTCCCT GCAACGGAGGCGGTACGACAGATTCGAGGCTAAGCTGGCTGGGATCGAGG CTCAAAGAGCGATGCTGCCGCTTTCAGCCGGCGGCGGTTGGTCGGTCGGG CAAGACGCGTTGGCGTCGCGGGGAGTGTGCCCCATCTGCCTAGACGCCTT CTCGGAAGCGGCGGATGGTAGCGGAGCCGACACCAAGGGGCTGGTGGGCG CGGACCGGATGCCGGCGGCGACACTGCCTGACTGCGGGCACACCTTCTGC CAAAGGCGACTGCCTATCCCGATGGAACGGAGACGGAAGCGACTCGAGCA GTGGCAACCCCGAAGCCTGCCCGTGTCCTGTCTGCGATGCCCCCACGCCG GCGGTCGGAGACCCGCGGCTCGGCCGCACGAGTAG back to top
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