EsuBft1106_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1106_2a-0001
Unique NameEsuBft1106_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_210contigScaffold_210:28653..29752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1106_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length97
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1106_2aEsuBft1106_2aEctocarpus subulatus male Bft15bgeneScaffold_210 28653..29752 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1106_2a-0001-exonEsuBft1106_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_210 28653..28903 +
EsuBft1106_2a-0001-exonagat-exon-91463Ectocarpus subulatus male Bft15bexonScaffold_210 29029..29752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1106_2a-0001-cdsEsuBft1106_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_210 28653..28903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1106_2a-0001EsuBft1106_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_210 28653..29752 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1106_2a-0001 ID=EsuBft1106_2a-0001|Name=EsuBft1106_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=975bp|location=Sequence derived from alignment at Scaffold_210:28653..29752+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGATGGCGCGGGCGGCCTCGGGAGCTCCGGACCGGCAGCACCTGGC
GAGGGCGCGGGCCACAGCGCGGTCCTCGAAGGTGGCGGCGACAGCGACGG
TCCGTCGGTGGCAGCATCAGCGGGCGGCGGTGGAAAGGCGGATATCGATG
GCGCGGGCGGCCTCGGGAACGGCGGAGCGGCAGCACAATGAGGAGGCGGG
GGCCACTACGCGGGCCCCGAAGGCGGCGGCGGCAGCGACCGTCCGGCGGC
GCGACCGTCCGGCGGCGGTAGCAGCAGCGGGCAGCCGTGAGACGGCGGAT
GTCGATGGCGCGGGCGGCCTCGGGAGCTCCGGACCGGCAGCACCAGGCGA
AGGTGCGGGCCACAACGCGGGCCCCGAAGGCGGCGGCGGCAGCGACCGTC
CGGCGGCGGTAGCAGCAGCGGGCAGCCGTGAGACGGCGGATGTCGATGGC
GCGGGCGGCCTCGGGAGCTCCGGACCGGCAGCACCAGGCGAAGGTGCGGG
CCACAACGCGGGCCCCGAAGGCGGCGGCGGCAGCGACCGTCCGGCGGCGG
TAGCAGCAGCGGGCAGCCGTGAGACGGCGGATGTCGATGGCGCGGGCGGC
CTCGGGAGCTCCGGACCGGCAGCACCAGGCGAAGGTGCGGGCCATAACGC
GGGCCCCGAAGGCGGCTGCGGCGCCGATGGTCCGGCGTCGGTAGCATCAC
TGGGCGGCGGTGAAACGGCGGATGTCGATGGCGGAGGTGGCGTCAGGACC
GGCGGAGCGGCAGCACCAGGCGACGGCGCGGGCCACAATGCGGGCCCCGA
AGGCGGCGGCGACAGCGACGGTCCGGTAGTGGCAGCAGCAGTGGGCGGCG
GTGAGACGGCGGATGTCGATGGCGCGGGCGGCCTCGGGAGCGGCGGAGCG
GCAGCACCAGGCGAAGGCGCGGGTCACAACGCGTGCCCCGAAGCCGGCGG
CGCTAGCGATGGTCCGGCGATTTAG
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protein sequence of EsuBft1106_2a-0001

>EsuBft1106_2 ID=EsuBft1106_2|Name=EsuBft1106_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=324bp
MSMARAASGAPDRQHLARARATARSSKVAATATVRRWQHQRAAVERRISM
ARAASGTAERQHNEEAGATTRAPKAAAAATVRRRDRPAAVAAAGSRETAD
VDGAGGLGSSGPAAPGEGAGHNAGPEGGGGSDRPAAVAAAGSRETADVDG
AGGLGSSGPAAPGEGAGHNAGPEGGGGSDRPAAVAAAGSRETADVDGAGG
LGSSGPAAPGEGAGHNAGPEGGCGADGPASVASLGGGETADVDGGGGVRT
GGAAAPGDGAGHNAGPEGGGDSDGPVVAAAVGGGETADVDGAGGLGSGGA
AAPGEGAGHNACPEAGGASDGPAI
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mRNA from alignment at Scaffold_210:28653..29752+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1106_2a-0001 ID=EsuBft1106_2a-0001|Name=EsuBft1106_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1100bp|location=Sequence derived from alignment at Scaffold_210:28653..29752+ (Ectocarpus subulatus male Bft15b)
ATGTCGATGGCGCGGGCGGCCTCGGGAGCTCCGGACCGGCAGCACCTGGC
GAGGGCGCGGGCCACAGCGCGGTCCTCGAAGGTGGCGGCGACAGCGACGG
TCCGTCGGTGGCAGCATCAGCGGGCGGCGGTGGAAAGGCGGATATCGATG
GCGCGGGCGGCCTCGGGAACGGCGGAGCGGCAGCACAATGAGGAGGCGGG
GGCCACTACGCGGGCCCCGAAGGCGGCGGCGGCAGCGACCGTCCGGCGGC
GGTAGCAGCAGCGGGCAGCCGTGAGACGGCGGATGTCGATGGCGCGGGCG
GCCTCGGGAGCTCCGGACCGGCAGCACCAGGCGAAGGTGCGGGCCACAAC
GCGGGCCCCGAAGGCGGCGGCGGCAGCGACCGTCCGGCGGCGGTAGCAGC
AGCGGGCAGCCGTGAGACGGCGGATGTCGATGGCGCGGGCGGCCTCGGGA
GCTCCGGACCGGCAGCACCAGGCGAAGGTGCGGGCCACAACGCGGGCCCC
GAAGGCGGCGGCGGCAGCGACCGTCCGGCGGCGGTAGCAGCAGCGGGCAG
CCGTGAGACGGCGGATGTCGATGGCGCGGGCGGCCTCGGGAGCTCCGGAC
CGGCAGCACCAGGCGAAGGTGCGGGCCACAACGCGGGCCCCGAAGGCGGC
GGCGGCAGCGACCGTCCGGCGGCGGTAGCAGCAGCGGGCAGCCGTGAGAC
GGCGGATGTCGATGGCGCGGGCGGCCTCGGGAGCTCCGGACCGGCAGCAC
CAGGCGAAGGTGCGGGCCATAACGCGGGCCCCGAAGGCGGCTGCGGCGCC
GATGGTCCGGCGTCGGTAGCATCACTGGGCGGCGGTGAAACGGCGGATGT
CGATGGCGGAGGTGGCGTCAGGACCGGCGGAGCGGCAGCACCAGGCGACG
GCGCGGGCCACAATGCGGGCCCCGAAGGCGGCGGCGACAGCGACGGTCCG
GTAGTGGCAGCAGCAGTGGGCGGCGGTGAGACGGCGGATGTCGATGGCGC
GGGCGGCCTCGGGAGCGGCGGAGCGGCAGCACCAGGCGAAGGCGCGGGTC
ACAACGCGTGCCCCGAAGCCGGCGGCGCTAGCGATGGTCCGGCGATTTAG
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Coding sequence (CDS) from alignment at Scaffold_210:28653..29752+

>EsuBft1106_2a-0001 ID=EsuBft1106_2a-0001|Name=EsuBft1106_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=975bp|location=Sequence derived from alignment at Scaffold_210:28653..29752+ (Ectocarpus subulatus male Bft15b)
ATGTCGATGGCGCGGGCGGCCTCGGGAGCTCCGGACCGGCAGCACCTGGC
GAGGGCGCGGGCCACAGCGCGGTCCTCGAAGGTGGCGGCGACAGCGACGG
TCCGTCGGTGGCAGCATCAGCGGGCGGCGGTGGAAAGGCGGATATCGATG
GCGCGGGCGGCCTCGGGAACGGCGGAGCGGCAGCACAATGAGGAGGCGGG
GGCCACTACGCGGGCCCCGAAGGCGGCGGCGGCAGCGACCGTCCGGCGGC
GCGACCGTCCGGCGGCGGTAGCAGCAGCGGGCAGCCGTGAGACGGCGGAT
GTCGATGGCGCGGGCGGCCTCGGGAGCTCCGGACCGGCAGCACCAGGCGA
AGGTGCGGGCCACAACGCGGGCCCCGAAGGCGGCGGCGGCAGCGACCGTC
CGGCGGCGGTAGCAGCAGCGGGCAGCCGTGAGACGGCGGATGTCGATGGC
GCGGGCGGCCTCGGGAGCTCCGGACCGGCAGCACCAGGCGAAGGTGCGGG
CCACAACGCGGGCCCCGAAGGCGGCGGCGGCAGCGACCGTCCGGCGGCGG
TAGCAGCAGCGGGCAGCCGTGAGACGGCGGATGTCGATGGCGCGGGCGGC
CTCGGGAGCTCCGGACCGGCAGCACCAGGCGAAGGTGCGGGCCATAACGC
GGGCCCCGAAGGCGGCTGCGGCGCCGATGGTCCGGCGTCGGTAGCATCAC
TGGGCGGCGGTGAAACGGCGGATGTCGATGGCGGAGGTGGCGTCAGGACC
GGCGGAGCGGCAGCACCAGGCGACGGCGCGGGCCACAATGCGGGCCCCGA
AGGCGGCGGCGACAGCGACGGTCCGGTAGTGGCAGCAGCAGTGGGCGGCG
GTGAGACGGCGGATGTCGATGGCGCGGGCGGCCTCGGGAGCGGCGGAGCG
GCAGCACCAGGCGAAGGCGCGGGTCACAACGCGTGCCCCGAAGCCGGCGG
CGCTAGCGATGGTCCGGCGATTTAG
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