EsuBft3934_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3934_2a-0001
Unique Name	EsuBft3934_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_106	contig	Scaffold_106:75053..77217 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FIA9
ProteomeId	EsuBft3934_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	5
Max annot lvl	2759\|Eukaryota
Length	183
Hectar predicted targeting category	other localisation
Evalue	4.69e-114
EggNOG OGs	2D5KK@1\|root,2SYVY@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3934_2a	EsuBft3934_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_106 75053..77217 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3934_2a-0001	EsuBft3934_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_106 75053..77217 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3934_2a-0001-exon	agat-exon-17896	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 75053..75310 +
EsuBft3934_2a-0001-exon	agat-exon-17897	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 75402..75711 +
EsuBft3934_2a-0001-exon	agat-exon-17895	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 75866..76401 +
EsuBft3934_2a-0001-exon	agat-exon-17898	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 76442..77129 +
EsuBft3934_2a-0001-exon	EsuBft3934_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 77171..77217 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3934_2a-0001-cds	EsuBft3934_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_106 75053..75310 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_106:75053..77217+
coding sequence from alignment at Scaffold_106:75053..77217+

spliced messenger RNA

>EsuBft3934_2a-0001 ID=EsuBft3934_2a-0001|Name=EsuBft3934_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1839bp|location=Sequence derived from alignment at Scaffold_106:75053..77217+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCTGCAGATGACGATGTGGCGGAGGGGAACGCAACGGTGAGCGA
TGGCCTTTGGTGGTGCGGCCGCTGCTATCAGAAACGGTTGGACGGCATAA
AGAGAGACGAGAAACAGCCAGAGCACACAGCGAACAATACGCATGGATCG
GGGGGTGAGGCGCCGGTGCCTCCAGATCCGTTGGACACGGTGCGCGCTAT
GGTGGAAGATGTCGTCCGTCGAGGTGAGATCCTGTACTGGCAGGACGTCG
CCGCGTGGAGAGCACTCGGCACGAAACTCAAGGGCGCGACGAAGAAAAAT
GTTTTCTCCATCCCGGCTAGGAACAGCATCAACAAGGCCACGAAGAGTCA
AGGGAGGTCGTCTGCACTCAAGGATTCCGTCGGTAATGCCTACGCTGGGG
GGCAAGAGTGGAAGGCCCTCACGCTGAACATGATCGATGCGGCCAGAGAA
GGTGGGGGTGTGGTGACGCAAGACCAGATGCTGGAAATGGTAGCTTCCGT
AGGAGCGGCCACGCCGTACAGCATGGCCAACGCGACAGGAGGTGAGGAAG
AGAGCGTGCGCAATACAGGAGCTAAGCACGCCAACAAGGCGGCAGGTCCA
GGGAAATGGGTCAGAGAGCACTGTGCCGACGGGTTCGCAGACGACCCGTT
TTACGACGCCGACGCTCATGGCGTGGATCTTCCCGTGTCAATCCACCAAG
GGGTGCACCCGGAATATCTCGAGAAGGGAACTGCGGGAGTAATCGACTAC
TTCAAGAGGCAGCTGTTGTCGAAGTGGCTGCAGCCAACCGAGCTACTCAT
GGTGTGCTACGACCGACAGGAACTGGTCCCGGTAATCAAAGGACAAGAGC
AGCTTGGGAGGACCGAGAAACTTGGTGAGTGCTCTCGGACCTTCGACCCG
AAGTCAACGGACCCTGTTCCTTCGTTACAGTATGGACCATGGCTTCGAGC
CGATGGCAAGGCGGCGCGGGACGGAATCGCCGCCAACCTCGCCATGCGCG
TGCTAGCTGATGAAGTCTGGACCGGCGACACCAAGCCGAACGGAATCGTC
GCATTCTATGGCGTCGGAGGTGAGCCTGGTCTGAGAGCTGATCATCCATC
TGGTGTAACTCGGAGGCGCTTTCCGGAACCGTACCACTCCTTCACTTTCG
AAACGGAAANGGCGCGGGACGGAATCGCCGCCAACCTCGCCATGCGCGTG
CTAGCTGATGAAGTCTGGACCGGCGACACCAAGCCGAACGGAATCGTCGC
ATTCTATGGCGTCGGAGGTGAGCCTGGTCTGAGAGCTGATCATCCAGCTG
GTGTAGATGCGGAGGGCGTAGGCCTTGAGATGGGAGGGGTAGGTGCCACG
GAGGCGCTTTCCGGAACCGAACCACTCCTTCACTTTCGAAACGGAAACGA
TCCGGTACTCGGCGTCGAGCGGCAGCGAGGGCCAGACATCGGCGAGGCGG
AGCTCTCCGTGATACACTTCATCGTTTGGGCGAAGAGGTACTGGGGGAAA
AACTTCCACAAGTGGATCGTTTCATCGGTAGACACGGACCTATGGATGAT
CATTCTACTGGCGATGACCACTGGTTGGCTCCGGCCTCGTGGCGAGGGGG
CGGTTGACGTGACCGTCCAGAAGGTCGTGGGTGGCGAGACCAAGTTCCTG
TGGATGAACAGAGTGTTCGCCAGCATCTGCGAGCTCCAGGACGGAAGCGA
GTCCGCGTGGCCGCCATTGACCTTCAGGGGATGGATTCCCACGGACAATG
ACAAGGTCCGTCTGTTCGTCCTAACGTTCCTGGAGTCGGGCTATGTGGGT
ACTGGCCCTCAAGAGCGTGCGGACGGAGGGATTGTTTGA

protein sequence of EsuBft3934_2a-0001

>EsuBft3934_2 ID=EsuBft3934_2|Name=EsuBft3934_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=612bp
MDAADDDVAEGNATVSDGLWWCGRCYQKRLDGIKRDEKQPEHTANNTHGS
GGEAPVPPDPLDTVRAMVEDVVRRGEILYWQDVAAWRALGTKLKGATKKN
VFSIPARNSINKATKSQGRSSALKDSVGNAYAGGQEWKALTLNMIDAARE
GGGVVTQDQMLEMVASVGAATPYSMANATGGEEESVRNTGAKHANKAAGP
GKWVREHCADGFADDPFYDADAHGVDLPVSIHQGVHPEYLEKGTAGVIDY
FKRQLLSKWLQPTELLMVCYDRQELVPVIKGQEQLGRTEKLGECSRTFDP
KSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIV
AFYGVGGEPGLRADHPSGVTRRRFPEPYHSFTFETEXARDGIAANLAMRV
LADEVWTGDTKPNGIVAFYGVGGEPGLRADHPAGVDAEGVGLEMGGVGAT
EALSGTEPLLHFRNGNDPVLGVERQRGPDIGEAELSVIHFIVWAKRYWGK
NFHKWIVSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVVGGETKFL
WMNRVFASICELQDGSESAWPPLTFRGWIPTDNDKVRLFVLTFLESGYVG
TGPQERADGGIV

mRNA from alignment at Scaffold_106:75053..77217+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3934_2a-0001 ID=EsuBft3934_2a-0001|Name=EsuBft3934_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2165bp|location=Sequence derived from alignment at Scaffold_106:75053..77217+ (Ectocarpus subulatus male Bft15b)
ATGGATGCTGCAGATGACGATGTGGCGGAGGGGAACGCAACGGTGAGCGA
TGGCCTTTGGTGGTGCGGCCGCTGCTATCAGAAACGGTTGGACGGCATAA
AGAGAGACGAGAAACAGCCAGAGCACACAGCGAACAATACGCATGGATCG
GGGGGTGAGGCGCCGGTGCCTCCAGATCCGTTGGACACGGTGCGCGCTAT
GGTGGAAGATGTCGTCCGTCGAGGTGAGATCCTGTACTGGCAGGACGTCG
CCGCGTGGGTAACAGCGGAACGCGCGAAGCTTGGCATGGAAGAGTTACAA
GGGAGATACCCAAGAAAAATCGTCCGGGACATATTTGCAAATGGGTCAGA
GAGCACTCGGCACGAAACTCAAGGGCGCGACGAAGAAAAATGTTTTCTCC
ATCCCGGCTAGGAACAGCATCAACAAGGCCACGAAGAGTCAAGGGAGGTC
GTCTGCACTCAAGGATTCCGTCGGTAATGCCTACGCTGGGGGGCAAGAGT
GGAAGGCCCTCACGCTGAACATGATCGATGCGGCCAGAGAAGGTGGGGGT
GTGGTGACGCAAGACCAGATGCTGGAAATGGTAGCTTCCGTAGGAGCGGC
CACGCCGTACAGCATGGCCAACGCGACAGGAGGTGAGGAAGAGAGCGTGC
GCAATACAGGTTGTCATCTCGTGCTCTCGCTCCCAGCCGAAGCTCACCCA
CTCTCCACACCCGTGTTTCTGAGTGCTATTATCATAATGCATACCGCATC
ACATTGTGTTCACCCCCCCATCCCCAAACACCCCTGTTGGTAATCTCTCC
CCAAACGTATCAGGAGCTAAGCACGCCAACAAGGCGGCAGGTCCAGGGAA
ATGGGTCAGAGAGCACTGTGCCGACGGGTTCGCAGACGACCCGTTTTACG
ACGCCGACGCTCATGGCGTGGATCTTCCCGTGTCAATCCACCAAGGGGTG
CACCCGGAATATCTCGAGAAGGGAACTGCGGGAGTAATCGACTACTTCAA
GAGGCAGCTGTTGTCGAAGTGGCTGCAGCCAACCGAGCTACTCATGGTGT
GCTACGACCGACAGGAACTGGTCCCGGTAATCAAAGGACAAGAGCAGCTT
GGGAGGACCGAGAAACTTGGTGAGTGCTCTCGGACCTTCGACCCGAAGTC
AACGGACCCTGTTCCTTCGTTACAGTATGGACCATGGCTTCGAGCCGATG
GCAAGGCGGCGCGGGACGGAATCGCCGCCAACCTCGCCATGCGCGTGCTA
GCTGATGAAGTCTGGACCGGCGACACCAAGCCGAACGGAATCGTCGCATT
CTATGGCGTCGGAGGTGAGCCTGGTCTGAGAGCTGATCATCCATCTGGTG
TAGATGCGGAGGGCGTAGGCCTTGAGATGGGAGGGGTAGGTAACTCGGAG
GCGCTTTCCGGAACCGTACCACTCCTTCACTTTCGAAACGGAAANGGCGC
GGGACGGAATCGCCGCCAACCTCGCCATGCGCGTGCTAGCTGATGAAGTC
TGGACCGGCGACACCAAGCCGAACGGAATCGTCGCATTCTATGGCGTCGG
AGGTGAGCCTGGTCTGAGAGCTGATCATCCAGCTGGTGTAGATGCGGAGG
GCGTAGGCCTTGAGATGGGAGGGGTAGGTGCCACGGAGGCGCTTTCCGGA
ACCGAACCACTCCTTCACTTTCGAAACGGAAACGATCCGGTACTCGGCGT
CGAGCGGCAGCGAGGGCCAGACATCGGCGAGGCGGAGCTCTCCGTGATAC
ACTTCATCGTTTGGGCGAAGAGGTACTGGGGGAAAAACTTCCACAAGTGG
ATCGTTTCATCGGTAGACACGGACCTATGGATGATCATTCTACTGGCGAT
GACCACTGGTTGGCTCCGGCCTCGTGGCGAGGGGGCGGTTGACGTGACCG
TCCAGAAGGTCGTGGGTGGCGAGACCAAGTTCCTGTGGATGAACAGAGTG
TTCGCCAGCATCTGCGAGCTCCAGGACGGAAGCGAGTCCGCGTGGCCGCC
ATTGACCTTCAGGGGATGGATTCCCACGGACAATGACAAGGTCCGTCTGT
TCGTCCTAACGTTCCTGGAGTCGGGCTGTGACTACCTCCCGGCAATTTCC
GGGCTGCCGTTCGACAAGATGTGGGTACTGGCCCTCAAGAGCGTGCGGAC
GGAGGGATTGTTTGA

Coding sequence (CDS) from alignment at Scaffold_106:75053..77217+

>EsuBft3934_2a-0001 ID=EsuBft3934_2a-0001|Name=EsuBft3934_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1839bp|location=Sequence derived from alignment at Scaffold_106:75053..77217+ (Ectocarpus subulatus male Bft15b)
ATGGATGCTGCAGATGACGATGTGGCGGAGGGGAACGCAACGGTGAGCGA
TGGCCTTTGGTGGTGCGGCCGCTGCTATCAGAAACGGTTGGACGGCATAA
AGAGAGACGAGAAACAGCCAGAGCACACAGCGAACAATACGCATGGATCG
GGGGGTGAGGCGCCGGTGCCTCCAGATCCGTTGGACACGGTGCGCGCTAT
GGTGGAAGATGTCGTCCGTCGAGGTGAGATCCTGTACTGGCAGGACGTCG
CCGCGTGGAGAGCACTCGGCACGAAACTCAAGGGCGCGACGAAGAAAAAT
GTTTTCTCCATCCCGGCTAGGAACAGCATCAACAAGGCCACGAAGAGTCA
AGGGAGGTCGTCTGCACTCAAGGATTCCGTCGGTAATGCCTACGCTGGGG
GGCAAGAGTGGAAGGCCCTCACGCTGAACATGATCGATGCGGCCAGAGAA
GGTGGGGGTGTGGTGACGCAAGACCAGATGCTGGAAATGGTAGCTTCCGT
AGGAGCGGCCACGCCGTACAGCATGGCCAACGCGACAGGAGGTGAGGAAG
AGAGCGTGCGCAATACAGGAGCTAAGCACGCCAACAAGGCGGCAGGTCCA
GGGAAATGGGTCAGAGAGCACTGTGCCGACGGGTTCGCAGACGACCCGTT
TTACGACGCCGACGCTCATGGCGTGGATCTTCCCGTGTCAATCCACCAAG
GGGTGCACCCGGAATATCTCGAGAAGGGAACTGCGGGAGTAATCGACTAC
TTCAAGAGGCAGCTGTTGTCGAAGTGGCTGCAGCCAACCGAGCTACTCAT
GGTGTGCTACGACCGACAGGAACTGGTCCCGGTAATCAAAGGACAAGAGC
AGCTTGGGAGGACCGAGAAACTTGGTGAGTGCTCTCGGACCTTCGACCCG
AAGTCAACGGACCCTGTTCCTTCGTTACAGTATGGACCATGGCTTCGAGC
CGATGGCAAGGCGGCGCGGGACGGAATCGCCGCCAACCTCGCCATGCGCG
TGCTAGCTGATGAAGTCTGGACCGGCGACACCAAGCCGAACGGAATCGTC
GCATTCTATGGCGTCGGAGGTGAGCCTGGTCTGAGAGCTGATCATCCATC
TGGTGTAACTCGGAGGCGCTTTCCGGAACCGTACCACTCCTTCACTTTCG
AAACGGAAANGGCGCGGGACGGAATCGCCGCCAACCTCGCCATGCGCGTG
CTAGCTGATGAAGTCTGGACCGGCGACACCAAGCCGAACGGAATCGTCGC
ATTCTATGGCGTCGGAGGTGAGCCTGGTCTGAGAGCTGATCATCCAGCTG
GTGTAGATGCGGAGGGCGTAGGCCTTGAGATGGGAGGGGTAGGTGCCACG
GAGGCGCTTTCCGGAACCGAACCACTCCTTCACTTTCGAAACGGAAACGA
TCCGGTACTCGGCGTCGAGCGGCAGCGAGGGCCAGACATCGGCGAGGCGG
AGCTCTCCGTGATACACTTCATCGTTTGGGCGAAGAGGTACTGGGGGAAA
AACTTCCACAAGTGGATCGTTTCATCGGTAGACACGGACCTATGGATGAT
CATTCTACTGGCGATGACCACTGGTTGGCTCCGGCCTCGTGGCGAGGGGG
CGGTTGACGTGACCGTCCAGAAGGTCGTGGGTGGCGAGACCAAGTTCCTG
TGGATGAACAGAGTGTTCGCCAGCATCTGCGAGCTCCAGGACGGAAGCGA
GTCCGCGTGGCCGCCATTGACCTTCAGGGGATGGATTCCCACGGACAATG
ACAAGGTCCGTCTGTTCGTCCTAACGTTCCTGGAGTCGGGCTATGTGGGT
ACTGGCCCTCAAGAGCGTGCGGACGGAGGGATTGTTTGA