EsuBft892_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft892_9a-0001
Unique NameEsuBft892_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_196contigScaffold_196:75040..75980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G529
ProteomeIdEsuBft892_9
Protein domainsIPR027806
Protein domainsPTHR22930
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length85
Hectar predicted targeting categoryother localisation
Evalue2.88e-143
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionDDE superfamily endonuclease
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft892_9aEsuBft892_9aEctocarpus subulatus male Bft15bgeneScaffold_196 75040..75980 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft892_9a-0001-exonagat-exon-8601Ectocarpus subulatus male Bft15bexonScaffold_196 75040..75178 -
EsuBft892_9a-0001-exonEsuBft892_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_196 75222..75617 -
EsuBft892_9a-0001-exonagat-exon-8602Ectocarpus subulatus male Bft15bexonScaffold_196 75665..75980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft892_9a-0001-cdsEsuBft892_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_196 75040..75178 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft892_9a-0001-exonagat-five_prime_utr-14785Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_196 75928..75980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft892_9a-0001EsuBft892_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_196 75040..75927 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft892_9a-0001 ID=EsuBft892_9a-0001|Name=EsuBft892_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=851bp|location=Sequence derived from alignment at Scaffold_196:75040..75980- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTACTTCTCCCCCCGCCCGTTTTCGCCCTATAGCACCGAAACTGACGGCA
GCAATGGAACATGACTTTGCTCCTTGTGTCTGTTCGGTCAACAGGGGAGG
GTTTGGAGTTTCCAGGGTTCCTATCGACCTTGCGCTGGCGGTGACGATCT
GGCGCCTGGCATGTCCGACGACGCTGATCCGGGACCGGCTCTTTTGGGGG
ATAGCGGAACAGATGATATGCGATATCTTCAACCTCACCATCGAAGCGAT
CTTTGATCGCTGGGGTCACCTGGTAAACCAGCTGCAACATGATGCAATTC
TATCAAAGATAGATATGGGCTTTGTCGACGGCACTATTCGCGCGATCTCG
CGACCTAAGCGTAATCAGAGATTGTGGTACAATGGTTGGAAGCGAAAGCA
CGCGTTGAAGTATCAAGCGATCGACACCCCCGATGGGATAATTCGCATGC
TTTGGGGTCCCATACTCGGGCGTCGCCACGATGTCGCCATGGTAGGGGAA
AGTGGTCTGCTGCAAGATCTGCAGCAGTGGTTCAACGACGCAGCAGGCAC
CCCTTACTACGTATTCGGCGACCCTGCGTACAGCCTTTCGCCCTGGTTGC
TGGCGCCGTACAAGGGGGTATTGAACGCCTTCGAACAGGCCTTCAACACC
GCAATGAGCTCCGTCAGAGTCTCGGTCAAATGGGGGTTCGGAAAAATCGT
GGCCCTCTGGCCCGCTTGCGGGCTTGGTAAACAGTATGCGGTCGCCGGCA
TTCTGACGAATTGTCACTCGTCCTTCTACCGCAACAACACTTCTTTCTAC
TTCGGTGTAAAACCCCCGTCGCTTCGCAGCTACCTGAACGGCGAAGGGTA
G
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protein sequence of EsuBft892_9a-0001

>EsuBft892_9 ID=EsuBft892_9|Name=EsuBft892_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=265bp
MEHDFAPCVCSVNRGGFGVSRVPIDLALAVTIWRLACPTTLIRDRLFWGI
AEQMICDIFNLTIEAIFDRWGHLVNQLQHDAILSKIDMGFVDGTIRAISR
PKRNQRLWYNGWKRKHALKYQAIDTPDGIIRMLWGPILGRRHDVAMVGES
GLLQDLQQWFNDAAGTPYYVFGDPAYSLSPWLLAPYKGVLNAFEQAFNTA
MSSVRVSVKWGFGKIVALWPACGLGKQYAVAGILTNCHSSFYRNNTSFYF
GVKPPSLRSYLNGEG
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mRNA from alignment at Scaffold_196:75040..75980-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft892_9a-0001 ID=EsuBft892_9a-0001|Name=EsuBft892_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=941bp|location=Sequence derived from alignment at Scaffold_196:75040..75980- (Ectocarpus subulatus male Bft15b)
GTACTTCTCCCCCCGCCCGTTTTCGCCCTATAGCACCGAAACTGACGGCA
GCAATGGAACATGACTTTGCTCCTTGTGTCTGTTCGGTCAACAGGGGAGG
GTTTGGAGTTTCCAGGGTTCCTATCGACCTTGCGCTGGCGGTGACGATCT
GGCGCCTGGCATGTCCGACGACGCTGATCCGGGACCGGCTCTTTTGGGGG
ATAGCGGAACAGATGATATGCGATATCTTCAACCTCACCATCGAAGCGAT
CTTTGATCGCTGGGGTCACCTGGTAAACCAGCTGCAACATGATGCAATTC
TATCAAAGATAGATATGTTCTGTCAGGCGATTTATGAGAAGGTGCCCCGC
TCTCGCGTTGTAGGGGCTTTGTCGACGGCACTATTCGCGCGATCTCGCGA
CCTAAGCGTAATCAGAGATTGTGGTACAATGGTTGGAAGCGAAAGCACGC
GTTGAAGTATCAAGCGATCGACACCCCCGATGGGATAATTCGCATGCTTT
GGGGTCCCATACTCGGGCGTCGCCACGATGTCGCCATGGTAGGGGAAAGT
GGTCTGCTGCAAGATCTGCAGCAGTGGTTCAACGACGCAGCAGGCACCCC
TTACTACGTATTCGGCGACCCTGCGTACAGCCTTTCGCCCTGGTTGCTGG
CGCCGTACAAGGGGGTATTGAACGCCTTCGAACAGGCCTTCAACACCGCA
ATGAGCTCCGTCAGAGTCTCGGTCAAATGGGGGTTCGGAAAAATCGTGGC
CCTCTGGCCGTACGTTGACTAGCTATGCCAAGAAGCAGTAGGTGGCGCTC
AGCGCTTGCGGGCTTGGTAAACAGTATGCGGTCGCCGGCATTCTGACGAA
TTGTCACTCGTCCTTCTACCGCAACAACACTTCTTTCTACTTCGGTGTAA
AACCCCCGTCGCTTCGCAGCTACCTGAACGGCGAAGGGTAG
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Coding sequence (CDS) from alignment at Scaffold_196:75040..75980-

>EsuBft892_9a-0001 ID=EsuBft892_9a-0001|Name=EsuBft892_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=798bp|location=Sequence derived from alignment at Scaffold_196:75040..75980- (Ectocarpus subulatus male Bft15b)
ATGGAACATGACTTTGCTCCTTGTGTCTGTTCGGTCAACAGGGGAGGGTT
TGGAGTTTCCAGGGTTCCTATCGACCTTGCGCTGGCGGTGACGATCTGGC
GCCTGGCATGTCCGACGACGCTGATCCGGGACCGGCTCTTTTGGGGGATA
GCGGAACAGATGATATGCGATATCTTCAACCTCACCATCGAAGCGATCTT
TGATCGCTGGGGTCACCTGGTAAACCAGCTGCAACATGATGCAATTCTAT
CAAAGATAGATATGGGCTTTGTCGACGGCACTATTCGCGCGATCTCGCGA
CCTAAGCGTAATCAGAGATTGTGGTACAATGGTTGGAAGCGAAAGCACGC
GTTGAAGTATCAAGCGATCGACACCCCCGATGGGATAATTCGCATGCTTT
GGGGTCCCATACTCGGGCGTCGCCACGATGTCGCCATGGTAGGGGAAAGT
GGTCTGCTGCAAGATCTGCAGCAGTGGTTCAACGACGCAGCAGGCACCCC
TTACTACGTATTCGGCGACCCTGCGTACAGCCTTTCGCCCTGGTTGCTGG
CGCCGTACAAGGGGGTATTGAACGCCTTCGAACAGGCCTTCAACACCGCA
ATGAGCTCCGTCAGAGTCTCGGTCAAATGGGGGTTCGGAAAAATCGTGGC
CCTCTGGCCCGCTTGCGGGCTTGGTAAACAGTATGCGGTCGCCGGCATTC
TGACGAATTGTCACTCGTCCTTCTACCGCAACAACACTTCTTTCTACTTC
GGTGTAAAACCCCCGTCGCTTCGCAGCTACCTGAACGGCGAAGGGTAG
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