EsuBft741_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft741_19a-0001
Unique Name	EsuBft741_19a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_195	contig	Scaffold_195:870043..874367 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft741_19
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Length	366
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft741_19a	EsuBft741_19a	Ectocarpus subulatus male Bft15b	gene	Scaffold_195 870043..874367 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft741_19a-0001	EsuBft741_19	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_195 870043..871328 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft741_19a-0001-exon	agat-exon-66308	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 870043..870087 +
EsuBft741_19a-0001-exon	EsuBft741_19a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 870216..870435 +
EsuBft741_19a-0001-exon	agat-exon-66306	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 870702..870948 +
EsuBft741_19a-0001-exon	agat-exon-66307	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 871211..874367 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft741_19a-0001-cds	EsuBft741_19a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_195 870043..870087 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft741_19a-0001-exon	agat-three_prime_utr-20938	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_195 871329..874367 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_195:870043..874367+
coding sequence from alignment at Scaffold_195:870043..874367+

spliced messenger RNA

>EsuBft741_19a-0001 ID=EsuBft741_19a-0001|Name=EsuBft741_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3669bp|location=Sequence derived from alignment at Scaffold_195:870043..874367+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCCCGCTGAGGAGCCCGATGATCTTCAGAGTTCAGTTGTGGCTGC
CATCGCTTCTGCAGGCCAAGTCGGGTGGGCGAGGCCAGGATTAGTCGGGC
CGTGCTGCGAGAGGCACGGCAGGTGCGGCGGGATTTGTGTGTTCCACCTA
GCAGCCACCAAGAGCTGCGTGGTCGTCAGGGAGGGCGACACTGCGGGAGG
AGAGAGCAGCAGTAGGCCGGACGTGGATGGCGCCCAGGTGCGGGCTGTTG
AGGTCCCTGCTGAAGGTGCGGGTCGTGGGAGCAGAGGAGAGTATCCGCTA
CTCCCGAGCCGGTTGCTATATCGGTTTGTCCCCATTAAAAGGGCGTGTAG
GAGGGGGCACGCGGAGGCGGTGGAGTTCTGCCGCCTGCACCCCAGCAGCA
TGGAAGGAACACAAGACCGGGAGATGGCCTGGAGGTATACAACACCAATG
TCTGCTGGGGCGGGTCTGGAGACAAGGCCGGAGCGGGAATGCCCGCGGGT
TGTACCCGCAAGCACGGCAGTGGCCGTGGCTGCCTTCTACCAAGAGCGGG
AAGGGGGCAGCGAACATCAAGGCGCGTGGGGTACCGCGTGCACTCTACAT
CATCAGCTGGCGGGGCCCGGAAATACGTAGCTGTGGGATGGTGGAGTTCA
AAGACACGAGAAAGCCGTCGTGTGCCTGTCTGCTACACCGCTACACCGAG
GAACGTCGGGACGCCGAGGGACGTCGGGTGTGGGCGGGTGGGGAGGGAAG
CAAAACGGACCAGCCGCGCGGTGGATTTCCGCGGGCACTATCTTCATTTT
GGTTGGTACCGGAATGTGTTTTATTTTGTTTTTTTTTCTGATTCTTTTGT
ATGTGGCGTTTAGCAGTAAAGGGCGATAACTTGTATTGCACGTGAATAGT
CGCAAGTGAGGCGCTGTTGCGGACTTGCATAGATCGCTGTTAATTGCTTG
TTGAAATCCATGGGTGTTTCCGCCGCCACATGCTCGAGTTTCACGCGTCA
CCGCTTGTTTTGTGTTCCCTGTGTGGCCTGTGTGGTTGCAGAATAAGGGA
GGGTGGCGCCGTGCGTGGGTTTTTTGTTTTGGAGAGTGTAATGCTCGGAG
AGTTTTGCGCCCGGTCTGCAGATATTCTGCAACGTGACAGAGTTATGGTC
GTCCTCTCATGATTGAGGTGGAACTATTTCGATCTTGCAGTTATTGGATG
ACGGAGGGCGTTGCCTCTTGGGTGTTGTTGGACTCTATTTACGGGAGGAG
TTTGGTCGTGTTTCCACGATGTTGCATGTACCATGTGTCTGATTTGTTGA
TTGAATGCTGGACGATCGCCACGTGTATTTGCTTCTAGGCAACCAAGTGA
CTGAGTAGTCTGGTGAATAAGATCATGTAACGAGTAAGGATACGCCGGGA
GTTCGAAACTCACCAGGCGTCGCCTTTGTTCAAGGAATGAAGAAAGGAAA
GCGCCTTTCCGAGAAGGGGAAAGCGACGCGCGTTGTTTGGCACACTAGAG
AGGGCGTATGAAGTCGTCCCCAACTACTAGGCATGTGTTGCGTAAGGAAG
GGCATACGGCGTGTAGACTATCAGTGTTATTCGAGGAGCGGACAATGAAT
ATCAGGTGCATCGTAGGTTGCTATTTTGGCCAAGTTTGTTGTACGACCTC
ACCAGAAGGGTAGGGGCGTGCTTGATGATTTGTTTTTGTGCTGCGCAGGG
AGGACCTTGTCGAGTCAGCCGAGCGTGGCGTAGAGAGCGAGCCGGGGGCG
GTGGTAGATATTGTCTTGCCTTGATGTTGCAGTACGGCCGTTGGAATCTT
TCATGATATGAACGGCGTGAAGGCGTTGAGATTTGTAAGGGGTTTTGATC
CGATGGCGGGTTTCCCCTTGTTTCTGATTTGCGTTGTTTTAGGTGCTTTT
CGGATGTACTCTTCGACGCACGAGTGATGGTTATTCACTGGCGTAAAGAA
CCAAGGGAGGGTGTTCGTGCGTGGAGGTAGATTAGTCGGATTGTACCAAA
TCACTGGCGGTTTCGTGTACCGCAGATGGGATTGCCTTGAGGGGCGGCTA
GGAGAGACCTTGAGATACGAGTTGCGGGCCCCCTTTTCGACTGGCTTTGG
GCCTGGCACTCTTCCTCCCTCCTTCTCCCTCATGTCCCCCTACGATAATA
CATGCCGTTAACAACACTCTTTGGACTCTGGAGGTTACACAACAAGGGCA
TACCAACAGGAACCACGTCACTGTTGTTGTGGTTGTTGATGTCGTGTTCA
ATGAAAAGCCGGGTTCTGTTCGTGAGGTGGATTATGCCATCCTTACGAAG
GCTACTGTGGTGATATCCATGTGTGGGTTTGAGCTAGATGCAATTGCGCA
AGCAGTGGCTGTTACTCGTTCTTGGATCTTCGGGGTATCTCCGATCATAT
CTTTGACAAGTTGTCACGTGTTCCGCTGTCGCGTGTTCCGAGTCCCGAAT
GCGTCTATACTACGAGGAATTACTTGCGGCTGTTGTACGAGTGCCTCGAT
GTTTGTGATGCATCCTGGTGCTCACTCTCTTCCGTTGCTTGTGTCTACGA
GGACAAGCAATGAAACGACTTTACCATCTCTTCACATTGTCAACCGGGAC
AACCGTGCTCATCCAGCAGCACTCGGCTTGGGGCCAATCAACACTCTAGA
GTTTTTGTGGCGTTAACGCCATAGTCTAGTGCGGGAGACACACACGTCTT
CGGAAGACTCTGGGAACTCTCTCGGGGGCGAGGCCGGCCCGACTCATGAG
GAGCCTAGGACGGCCATCGACGACGCCGGGGGCGACGCCAGCACCAGACT
GGAGAGGATGGTGACGGAGAAATTGGAGGGCATCATGGACACCTTGTCCC
GTTTAGTGCCCGGGACACCGCCCGCCGGAAGTGCGACCGCAGCAGGCGGC
GGGGGGGAGTCATTGGGGAGGATGCACGCCTTCCCTGGCGCGGGCCAGTT
GGACCACGCGCCGAATACCGGACGAGGGCTCGAGGGAGCGAGAGGACTGC
GAGGCCCGGAATCACGAGAGCCGACACCATACGGTGCTACCTGGCGAGAA
GGAGTCAGCAGAGAGGAGCAAGCTTCACGGTATGCTTTCAGCCCGCATGC
CCGGATACCACGTCTTAAACAGTTGGACGTCATCGGAGATGAAAAGAACC
GGCTGATGTTTTCATTACGCAGGTGCAGACTTGTGAATGGGTCGTGCCTT
GAGTGACAGCAGAGACATTGTGGTCCTAGGCATAGACGATGATGGCTGGT
AGAGCAGGGGGTGGAAGTAGGGGAGATGGCCACAAACATACCGGGATCTG
TGGGGGATGCTGACCCGAGTGATCTTCAACAACTCCACAAAAAGGCTCGT
ATTTGCATGGTTCCCCGATGCGCTTTCCCCGAAATCTGAGATTCAACAGC
AACAGCTACTCGCCCAGAAAACACTCGATGAAGAAGAGATTTTAAGAGTG
CTTCGCTCACGGGCTGGGCAACTGCAAGCGAAGGAAAAGAAGGGGAAGAG
TGATCGGCGAGCGAATCATCATGCGTTCGTAGCAGTAGAGGGGAACGGGA
GAGGGAAGAGACGATCGACACAAACCAGAGGGGACGAAGATGCGTACCTG
GCCAACGATAAGAAGTCAGTCAGGTGCTACATCTGCGATGGGGACCACTT
TGCATATGCATGCCCAGAG

protein sequence of EsuBft741_19a-0001

>EsuBft741_19 ID=EsuBft741_19|Name=EsuBft741_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=209bp
MHPAEEPDDLQSSVVAAIASAGQVGWARPGLVGPCCERHGRCGGICVFHL
AATKSCVVVREGDTAGGESSSRPDVDGAQVRAVEVPAEGAGRGSRGEYPL
LPSRLLYRFVPIKRACRRGHAEAVEFCRLHPSSMEGTQDREMAWRYTTPM
SAGAGLETRPERECPRVVPASTAVAVAAFYQEREGGSEHQGAWGTACTLH
HQLAGPGNT

mRNA from alignment at Scaffold_195:870043..874367+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft741_19a-0001 ID=EsuBft741_19a-0001|Name=EsuBft741_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4325bp|location=Sequence derived from alignment at Scaffold_195:870043..874367+ (Ectocarpus subulatus male Bft15b)
ATGCATCCCGCTGAGGAGCCCGATGATCTTCAGAGTTCAGTTGTGGTGAG
AAGCGGCAGCAGGAGGTTGTGCGTGATCCCGTGGTAAGGACATTACTGAG
TGACACGACGCGCACGTTTTGACTAGGGTTTCGAGTTTTGGCGAGAACCA
GGGGTGTAGGAGATGATGGGCAGGCTGCCATCGCTTCTGCAGGCCAAGTC
GGGTGGGCGAGGCCAGGATTAGTCGGGCCGTGCTGCGAGAGGCACGGCAG
GTGCGGCGGGATTTGTGTGTTCCACCTAGCAGCCACCAAGAGCTGCGTGG
TCGTCAGGGAGGGCGACACTGCGGGAGGAGAGAGCAGCAGTAGGCCGGAC
GTGGATGGCGCCCAGGTGCGGGCTGTTGAGGTCCCTGCTGAAGGTGTGTT
TGGTGCATTCCAGTACACCAACTCTCTCCGTCTGTTGTAGAAGTTGTGGC
AGAGCTGTTGCACAGCAGAGTTGCTACAGCTGGGGGCACTAGCGAAAGTG
TCCCAGCGACCGACTTATCCACTCAGGAGGGGTCGGACGAAGTTAGGCGG
CGCCAAGAGGATGCTGTCGACGGTGGGGATGCTGTGTAGTGCATGTCCAC
CAGGAGTCCCAACGGGGGCTCCATAGAGCGGGAGCACGGAGGCTGCCGCT
CGCCCGCAGGTGCGGGTCGTGGGAGCAGAGGAGAGTATCCGCTACTCCCG
AGCCGGTTGCTATATCGGTTTGTCCCCATTAAAAGGGCGTGTAGGAGGGG
GCACGCGGAGGCGGTGGAGTTCTGCCGCCTGCACCCCAGCAGCATGGAAG
GAACACAAGACCGGGAGATGGCCTGGAGGTATACAACACCAATGTCTGCT
GGGGCGGGTCTGGAGACAAGGCCGGAGCGGGAATGCCCGCGGGTTGTACC
CGCAAGGTATGTGGCCCGCGAACACGGGTGGAGAACACTCGTGTACACTT
GAGAGTAGTGTGTGCTCTCTTGTGTTTATCCCCATTAAGGAGCGTGTAGG
AGGGGGCACGCGAACCCAACCCGTCGTGTGTGCGGGGAAGGGTACCAGAA
AAATCTTGCTGGCCCCGATGGATATGCGGGGAGAGAAGTGCTTCCTGGCC
CCGATGGATAGGCGGGGTATCACGGAAGTTGTGTGAGAAGTGCTGGAGTA
TTTGGCCACACCCAGCAGCACGGCAGTGGCCGTGGCTGCCTTCTACCAAG
AGCGGGAAGGGGGCAGCGAACATCAAGGCGCGTGGGGTACCGCGTGCACT
CTACATCATCAGCTGGCGGGGCCCGGAAATACGTAGCTGTGGGATGGTGG
AGTTCAAAGACACGAGAAAGCCGTCGTGTGCCTGTCTGCTACACCGCTAC
ACCGAGGAACGTCGGGACGCCGAGGGACGTCGGGTGTGGGCGGGTGGGGA
GGGAAGCAAAACGGACCAGCCGCGCGGTGGATTTCCGCGGGCACTATCTT
CATTTTGGTTGGTACCGGAATGTGTTTTATTTTGTTTTTTTTTCTGATTC
TTTTGTATGTGGCGTTTAGCAGTAAAGGGCGATAACTTGTATTGCACGTG
AATAGTCGCAAGTGAGGCGCTGTTGCGGACTTGCATAGATCGCTGTTAAT
TGCTTGTTGAAATCCATGGGTGTTTCCGCCGCCACATGCTCGAGTTTCAC
GCGTCACCGCTTGTTTTGTGTTCCCTGTGTGGCCTGTGTGGTTGCAGAAT
AAGGGAGGGTGGCGCCGTGCGTGGGTTTTTTGTTTTGGAGAGTGTAATGC
TCGGAGAGTTTTGCGCCCGGTCTGCAGATATTCTGCAACGTGACAGAGTT
ATGGTCGTCCTCTCATGATTGAGGTGGAACTATTTCGATCTTGCAGTTAT
TGGATGACGGAGGGCGTTGCCTCTTGGGTGTTGTTGGACTCTATTTACGG
GAGGAGTTTGGTCGTGTTTCCACGATGTTGCATGTACCATGTGTCTGATT
TGTTGATTGAATGCTGGACGATCGCCACGTGTATTTGCTTCTAGGCAACC
AAGTGACTGAGTAGTCTGGTGAATAAGATCATGTAACGAGTAAGGATACG
CCGGGAGTTCGAAACTCACCAGGCGTCGCCTTTGTTCAAGGAATGAAGAA
AGGAAAGCGCCTTTCCGAGAAGGGGAAAGCGACGCGCGTTGTTTGGCACA
CTAGAGAGGGCGTATGAAGTCGTCCCCAACTACTAGGCATGTGTTGCGTA
AGGAAGGGCATACGGCGTGTAGACTATCAGTGTTATTCGAGGAGCGGACA
ATGAATATCAGGTGCATCGTAGGTTGCTATTTTGGCCAAGTTTGTTGTAC
GACCTCACCAGAAGGGTAGGGGCGTGCTTGATGATTTGTTTTTGTGCTGC
GCAGGGAGGACCTTGTCGAGTCAGCCGAGCGTGGCGTAGAGAGCGAGCCG
GGGGCGGTGGTAGATATTGTCTTGCCTTGATGTTGCAGTACGGCCGTTGG
AATCTTTCATGATATGAACGGCGTGAAGGCGTTGAGATTTGTAAGGGGTT
TTGATCCGATGGCGGGTTTCCCCTTGTTTCTGATTTGCGTTGTTTTAGGT
GCTTTTCGGATGTACTCTTCGACGCACGAGTGATGGTTATTCACTGGCGT
AAAGAACCAAGGGAGGGTGTTCGTGCGTGGAGGTAGATTAGTCGGATTGT
ACCAAATCACTGGCGGTTTCGTGTACCGCAGATGGGATTGCCTTGAGGGG
CGGCTAGGAGAGACCTTGAGATACGAGTTGCGGGCCCCCTTTTCGACTGG
CTTTGGGCCTGGCACTCTTCCTCCCTCCTTCTCCCTCATGTCCCCCTACG
ATAATACATGCCGTTAACAACACTCTTTGGACTCTGGAGGTTACACAACA
AGGGCATACCAACAGGAACCACGTCACTGTTGTTGTGGTTGTTGATGTCG
TGTTCAATGAAAAGCCGGGTTCTGTTCGTGAGGTGGATTATGCCATCCTT
ACGAAGGCTACTGTGGTGATATCCATGTGTGGGTTTGAGCTAGATGCAAT
TGCGCAAGCAGTGGCTGTTACTCGTTCTTGGATCTTCGGGGTATCTCCGA
TCATATCTTTGACAAGTTGTCACGTGTTCCGCTGTCGCGTGTTCCGAGTC
CCGAATGCGTCTATACTACGAGGAATTACTTGCGGCTGTTGTACGAGTGC
CTCGATGTTTGTGATGCATCCTGGTGCTCACTCTCTTCCGTTGCTTGTGT
CTACGAGGACAAGCAATGAAACGACTTTACCATCTCTTCACATTGTCAAC
CGGGACAACCGTGCTCATCCAGCAGCACTCGGCTTGGGGCCAATCAACAC
TCTAGAGTTTTTGTGGCGTTAACGCCATAGTCTAGTGCGGGAGACACACA
CGTCTTCGGAAGACTCTGGGAACTCTCTCGGGGGCGAGGCCGGCCCGACT
CATGAGGAGCCTAGGACGGCCATCGACGACGCCGGGGGCGACGCCAGCAC
CAGACTGGAGAGGATGGTGACGGAGAAATTGGAGGGCATCATGGACACCT
TGTCCCGTTTAGTGCCCGGGACACCGCCCGCCGGAAGTGCGACCGCAGCA
GGCGGCGGGGGGGAGTCATTGGGGAGGATGCACGCCTTCCCTGGCGCGGG
CCAGTTGGACCACGCGCCGAATACCGGACGAGGGCTCGAGGGAGCGAGAG
GACTGCGAGGCCCGGAATCACGAGAGCCGACACCATACGGTGCTACCTGG
CGAGAAGGAGTCAGCAGAGAGGAGCAAGCTTCACGGTATGCTTTCAGCCC
GCATGCCCGGATACCACGTCTTAAACAGTTGGACGTCATCGGAGATGAAA
AGAACCGGCTGATGTTTTCATTACGCAGGTGCAGACTTGTGAATGGGTCG
TGCCTTGAGTGACAGCAGAGACATTGTGGTCCTAGGCATAGACGATGATG
GCTGGTAGAGCAGGGGGTGGAAGTAGGGGAGATGGCCACAAACATACCGG
GATCTGTGGGGGATGCTGACCCGAGTGATCTTCAACAACTCCACAAAAAG
GCTCGTATTTGCATGGTTCCCCGATGCGCTTTCCCCGAAATCTGAGATTC
AACAGCAACAGCTACTCGCCCAGAAAACACTCGATGAAGAAGAGATTTTA
AGAGTGCTTCGCTCACGGGCTGGGCAACTGCAAGCGAAGGAAAAGAAGGG
GAAGAGTGATCGGCGAGCGAATCATCATGCGTTCGTAGCAGTAGAGGGGA
ACGGGAGAGGGAAGAGACGATCGACACAAACCAGAGGGGACGAAGATGCG
TACCTGGCCAACGATAAGAAGTCAGTCAGGTGCTACATCTGCGATGGGGA
CCACTTTGCATATGCATGCCCAGAG

Coding sequence (CDS) from alignment at Scaffold_195:870043..874367+

>EsuBft741_19a-0001 ID=EsuBft741_19a-0001|Name=EsuBft741_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=630bp|location=Sequence derived from alignment at Scaffold_195:870043..874367+ (Ectocarpus subulatus male Bft15b)
ATGCATCCCGCTGAGGAGCCCGATGATCTTCAGAGTTCAGTTGTGGCTGC
CATCGCTTCTGCAGGCCAAGTCGGGTGGGCGAGGCCAGGATTAGTCGGGC
CGTGCTGCGAGAGGCACGGCAGGTGCGGCGGGATTTGTGTGTTCCACCTA
GCAGCCACCAAGAGCTGCGTGGTCGTCAGGGAGGGCGACACTGCGGGAGG
AGAGAGCAGCAGTAGGCCGGACGTGGATGGCGCCCAGGTGCGGGCTGTTG
AGGTCCCTGCTGAAGGTGCGGGTCGTGGGAGCAGAGGAGAGTATCCGCTA
CTCCCGAGCCGGTTGCTATATCGGTTTGTCCCCATTAAAAGGGCGTGTAG
GAGGGGGCACGCGGAGGCGGTGGAGTTCTGCCGCCTGCACCCCAGCAGCA
TGGAAGGAACACAAGACCGGGAGATGGCCTGGAGGTATACAACACCAATG
TCTGCTGGGGCGGGTCTGGAGACAAGGCCGGAGCGGGAATGCCCGCGGGT
TGTACCCGCAAGCACGGCAGTGGCCGTGGCTGCCTTCTACCAAGAGCGGG
AAGGGGGCAGCGAACATCAAGGCGCGTGGGGTACCGCGTGCACTCTACAT
CATCAGCTGGCGGGGCCCGGAAATACGTAG