EsuBft741_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft741_18a-0001
Unique NameEsuBft741_18a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:868302..869670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft741_18
Protein domainsPTHR32134
Protein domainsSSF52058
Protein domainsG3DSA
Protein domainsIPR008615
Ownerapollo_admin@sb-roscoff.fr
Notef-box and fnip repeat-containing protein l60 os:acanthamoeba polyphaga mimivirus gn:mimi [Automatic annotation]
Nb exon5
Length1116
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft741_18aEsuBft741_18aEctocarpus subulatus male Bft15bgeneScaffold_195 868302..869670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft741_18a-0001EsuBft741_18Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 868302..869670 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft741_18a-0001-exonagat-exon-66303Ectocarpus subulatus male Bft15bexonScaffold_195 868302..868613 -
EsuBft741_18a-0001-exonagat-exon-66302Ectocarpus subulatus male Bft15bexonScaffold_195 868713..868979 -
EsuBft741_18a-0001-exonagat-exon-66304Ectocarpus subulatus male Bft15bexonScaffold_195 869034..869219 -
EsuBft741_18a-0001-exonagat-exon-66305Ectocarpus subulatus male Bft15bexonScaffold_195 869280..869627 -
EsuBft741_18a-0001-exonEsuBft741_18a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 869668..869670 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft741_18a-0001-cdsEsuBft741_18a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 868302..868613 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft741_18a-0001 ID=EsuBft741_18a-0001|Name=EsuBft741_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1116bp|location=Sequence derived from alignment at Scaffold_195:868302..869670- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTGCAGTTCATGTCGAAGTGTGCCTAGCCTGGATCTGAGGGTCAA
CCGCTACACGCCCGAACCCCTGTGGGCCCGGCCCCCCGACAGGGAGACCC
GCCGAGCAAAGCAGCGGCAAGTCGGTCGCGTGCCTATCCTTCGGGCGCGT
GTGGTGATCTGGGAGCTCTCGAGTGAAAATCTTCGTCTTGGCGGAGAGGG
CTTGGCTCCGGCGCAGTGCTTTATATTCAACAACCCTGCCAATGACAGGA
TGGATCGAAGGGTGTGGCCGCCGGCGCTCAAGGAGTTGTTCTTCGGGATG
ATGTTCGACAGCCCGTTGGAGAATATGGTGTGGCCGTCGTCGCTGGTGAA
GAATCTCAGCTTTGGCTGGCTGTTCGACCAGCCGATGGACCTCGTCACCT
GGCCTACATCCCTCACGGAATTGTGGATCGGGCGGAGCTTTAACCAGCCC
GTCCATCAAACCGTGTGGCCTCCGTCTCTTGAATTGTTCAAGTTTGGGAG
ATACTTCGACCAGCCTTTAGACGAAGTCGCCTGGCCGTTTCCTTGGCCAG
CATCGCTTCAGAGTATGCTATTTTTAGGCATGGTGAGGAACGCTTCTATC
GACCGCGTGGTGTGGCCCGAGTCACTCAATAATTTAGGGTTGGGAGAGGG
CTTCAACCAGTCACTAAATGGGGTCACTTGGAACGCATCGCTTCGGCACC
TGGACCTGGGCGATGACTTCAACCGGTCAATCGATGGAGTTACGTGGCCC
CCGTCACTGCAGCAGCTTTCCCTCGGGGAGAATTTTGATCAGTCGATTGG
CAAACACTTCAACCACCCCGTTGTTATAGCCACGTGGCCAATGTCCCTGC
AAAATATTTCGCTCGGGTTCGCGTTTAACCAGTCCATCGCCGACGTCGAG
TGGCCTGGATCCCTTCAAAAGTTGGATTTGGGCGAGCTATTCAATCAACC
AATCGCTGAAGCGACGCTGCCGGCCAACCTCCAGCAGCTGCGGTTCGGGT
CGTTGGGTTCCCACTTCAACCAGCCTGTGGACAGGGTCCGTTGGCCTGCG
TCACTGCGATCGCTTGAGTTTGGGATATCCTTCAACCAGGTACAGCGTGT
AGTGGCGACGGTTTAA
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protein sequence of EsuBft741_18a-0001

>EsuBft741_18 ID=EsuBft741_18|Name=EsuBft741_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=371bp
MLCSSCRSVPSLDLRVNRYTPEPLWARPPDRETRRAKQRQVGRVPILRAR
VVIWELSSENLRLGGEGLAPAQCFIFNNPANDRMDRRVWPPALKELFFGM
MFDSPLENMVWPSSLVKNLSFGWLFDQPMDLVTWPTSLTELWIGRSFNQP
VHQTVWPPSLELFKFGRYFDQPLDEVAWPFPWPASLQSMLFLGMVRNASI
DRVVWPESLNNLGLGEGFNQSLNGVTWNASLRHLDLGDDFNRSIDGVTWP
PSLQQLSLGENFDQSIGKHFNHPVVIATWPMSLQNISLGFAFNQSIADVE
WPGSLQKLDLGELFNQPIAEATLPANLQQLRFGSLGSHFNQPVDRVRWPA
SLRSLEFGISFNQVQRVVATV
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mRNA from alignment at Scaffold_195:868302..869670-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft741_18a-0001 ID=EsuBft741_18a-0001|Name=EsuBft741_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1369bp|location=Sequence derived from alignment at Scaffold_195:868302..869670- (Ectocarpus subulatus male Bft15b)
ATGGTATACGTCAACCGCACAACTCCAGTTGGCCTCATTGCAGCTCTGCA
GTTCATGTCGAAGTGTGCCTAGCCTGGATCTGAGGGTCAACCGCTACACG
CCCGAACCCCTGTGGGCCCGGCCCCCCGACAGGGAGACCCGCCGAGCAAA
GCAGCGGCAAGTCGGTCGCGTGCCTATCCTTCGGGCGCGTGTGGTGATCT
GGGAGCTCTCGAGTGAAAATCTTCGTCTTGGCGGAGAGGGCTTGGCTCCG
GCGCAGTGCTTTATATTCAACAACCCTGCCAATGACAGGATGGATCGAAG
GGTGTGGCCGCCGGCGCTCAAGGAGTTGTTCTTCGGGATGATGTTCGACA
GCCCGTTGGAGAATATGGTGTGGCCGTCGTCGCTGGTGAAGGTCTCGCTC
GGGAGTAACTTCAATGCCAATTAACCAATTACTTGGCCAGCATCGCTGCA
GAATCTCAGCTTTGGCTGGCTGTTCGACCAGCCGATGGACCTCGTCACCT
GGCCTACATCCCTCACGGAATTGTGGATCGGGCGGAGCTTTAACCAGCCC
GTCCATCAAACCGTGTGGCCTCCGTCTCTTGAATTGTTCAAGTTTGGGAG
ATACTTCGACCAGCCTTTAGACGAAGTCGCCTGGCCGGTATCCTTGAGAT
AACTGTTTTTCTTCGGTGCAGAGTATCAAGCTCTCGACCAGTTTCCTTGG
CCAGCATCGCTTCAGAGTATGCTATTTTTAGGCATGGTGAGGAACGCTTC
TATCGACCGCGTGGTGTGGCCCGAGTCACTCAATAATTTAGGGTTGGGAG
AGGGCTTCAACCAGTCACTAAATGGGGTCACTTGGAACGCATCGCTTCGG
CACCTGGACCTGGGCGATGACTTCAACCGGTCAATCGATGGAGTTACGTG
GCCCCCGTCACTGCAGCAGCTTTCCCTCGGGGAGAATTTTGATCAGTCGA
TTGGCAAAGTTTCGTGGCCGCCATTTCTGCAGCACCTCAATCTTGGGTAG
GTATGATTTTAATCAACCGGTGGATGAGGTGAAGCGCAAACGCTGGACTT
TGGGAAGCACTTCAACCACCCCGTTGTTATAGCCACGTGGCCAATGTCCC
TGCAAAATATTTCGCTCGGGTTCGCGTTTAACCAGTCCATCGCCGACGTC
GAGTGGCCTGGATCCCTTCAAAAGTTGGATTTGGGCGAGCTATTCAATCA
ACCAATCGCTGAAGCGACGCTGCCGGCCAACCTCCAGCAGCTGCGGTTCG
GGTCGTTGGGTTCCCACTTCAACCAGCCTGTGGACAGGGTCCGTTGGCCT
GCGTCACTGCGATCGCTTGAGTTTGGGATATCCTTCAACCAGGTACAGCG
TGTAGTGGCGACGGTTTAA
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Coding sequence (CDS) from alignment at Scaffold_195:868302..869670-

>EsuBft741_18a-0001 ID=EsuBft741_18a-0001|Name=EsuBft741_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1116bp|location=Sequence derived from alignment at Scaffold_195:868302..869670- (Ectocarpus subulatus male Bft15b)
ATGCTCTGCAGTTCATGTCGAAGTGTGCCTAGCCTGGATCTGAGGGTCAA
CCGCTACACGCCCGAACCCCTGTGGGCCCGGCCCCCCGACAGGGAGACCC
GCCGAGCAAAGCAGCGGCAAGTCGGTCGCGTGCCTATCCTTCGGGCGCGT
GTGGTGATCTGGGAGCTCTCGAGTGAAAATCTTCGTCTTGGCGGAGAGGG
CTTGGCTCCGGCGCAGTGCTTTATATTCAACAACCCTGCCAATGACAGGA
TGGATCGAAGGGTGTGGCCGCCGGCGCTCAAGGAGTTGTTCTTCGGGATG
ATGTTCGACAGCCCGTTGGAGAATATGGTGTGGCCGTCGTCGCTGGTGAA
GAATCTCAGCTTTGGCTGGCTGTTCGACCAGCCGATGGACCTCGTCACCT
GGCCTACATCCCTCACGGAATTGTGGATCGGGCGGAGCTTTAACCAGCCC
GTCCATCAAACCGTGTGGCCTCCGTCTCTTGAATTGTTCAAGTTTGGGAG
ATACTTCGACCAGCCTTTAGACGAAGTCGCCTGGCCGTTTCCTTGGCCAG
CATCGCTTCAGAGTATGCTATTTTTAGGCATGGTGAGGAACGCTTCTATC
GACCGCGTGGTGTGGCCCGAGTCACTCAATAATTTAGGGTTGGGAGAGGG
CTTCAACCAGTCACTAAATGGGGTCACTTGGAACGCATCGCTTCGGCACC
TGGACCTGGGCGATGACTTCAACCGGTCAATCGATGGAGTTACGTGGCCC
CCGTCACTGCAGCAGCTTTCCCTCGGGGAGAATTTTGATCAGTCGATTGG
CAAACACTTCAACCACCCCGTTGTTATAGCCACGTGGCCAATGTCCCTGC
AAAATATTTCGCTCGGGTTCGCGTTTAACCAGTCCATCGCCGACGTCGAG
TGGCCTGGATCCCTTCAAAAGTTGGATTTGGGCGAGCTATTCAATCAACC
AATCGCTGAAGCGACGCTGCCGGCCAACCTCCAGCAGCTGCGGTTCGGGT
CGTTGGGTTCCCACTTCAACCAGCCTGTGGACAGGGTCCGTTGGCCTGCG
TCACTGCGATCGCTTGAGTTTGGGATATCCTTCAACCAGGTACAGCGTGT
AGTGGCGACGGTTTAA
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