EsuBft741_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft741_9a-0001
Unique NameEsuBft741_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:774331..775954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7029.ACYPI067270-PA
ProteomeIdEsuBft741_9
Protein domainsSSF56672
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon os:drosophila melanogaster gn:pol pe:3 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl33208|Metazoa
Length1035
Evalue5.01e-46
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,41WI3@6656|Arthropoda,3SIRK@50557|Insecta,3ECJT@33342|Paraneoptera
Date last modified2016-06-14
Date creation2016-06-14
DescriptionK02A2.6-like
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft741_9aEsuBft741_9aEctocarpus subulatus male Bft15bgeneScaffold_195 774331..775954 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft741_9a-0001-exonagat-exon-66244Ectocarpus subulatus male Bft15bexonScaffold_195 774331..775153 +
EsuBft741_9a-0001-exonEsuBft741_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 775638..775785 +
EsuBft741_9a-0001-exonagat-exon-66243Ectocarpus subulatus male Bft15bexonScaffold_195 775891..775954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft741_9a-0001-cdsEsuBft741_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 774331..775153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft741_9a-0001EsuBft741_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 774331..775954 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft741_9a-0001 ID=EsuBft741_9a-0001|Name=EsuBft741_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1035bp|location=Sequence derived from alignment at Scaffold_195:774331..775954+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGAGTTCTTTAAACGATTGCGCCAGTACAACCTCAAGCTGTCTCC
TGGGAAAGCTCGTGTTGGTGCCACTCACGCCAACTTCCTCGGACACACCA
TCTCCCCGGCAGGCGTTAGCCCGGACGGCGTCAAGGTTCGAGCGCTCACA
CACATGCCACCGCCGACGAATGTCAAACAGCTTCGGAGCCTTCTCGGTGG
ACTCAGCTACTACAGGAAGTTTCTCAAGAACCTCGCCACCAAGGTACGGC
CCCTCAACGCCCTTCTCAAACAAGGTGTCCTCTTCAAGTACACCCCGAGC
ATGATCAAAGTTGTCAAGACGTTGTTGAGCGAACTCACGTGCCCTCCGAT
TCTAGTTTTTCCTGATTGGGCGGCGGTCGAAGACAACAGCCGTCCTCTCC
GGTTATGCTCTGACGCGTGTATCGATGGCTTCGGCGCCTCTTTAGAACAA
GAACAGCTGGATGGCTCCGTGCGCCCCATCGTATACATCAGCCGTGCTAC
CCTCCCTGCGGAGCGCAACTGGACCGTTTTGGATCTGGAGGCTGGTGGGA
TTGTTTGGGCAATCAAACGCCTTCGCGGCTATCTGTGGTCGACCAAGTTC
GTCATCTACTCGGACCACAAAGCCTTAGAGAGCATCGGCAAGGTGGGGGA
ACACAACGCACGGGTGCAACGATGGCTCGAGTTTCTGTCCAACTTCACGT
ATACGCTGAAGTATCGGAAAGGTTCAGCGAATGGTAACGCCGATTTTCTT
TCGCGGATGCCTTTGCCGGCACAAGACACGGACAAGACTGGCCAGGATTG
CATTGATGGTGTTGACCACGCGGGTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTCGTCTCCCGCGGCGCCGTCGTCGAGCGTGGA
GGTTTCGGCTGCTTCTGCAGCCGACACATCATCCTGCCGCTGACGCCATA
TGCGAAGGTGTACCGATTCAGGATGCAGCACACCCTTCATGAGAGTCGCC
GGATATCTCACGGCGCTTCGCGCTTGGTGATGTNN
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protein sequence of EsuBft741_9a-0001

>EsuBft741_9 ID=EsuBft741_9|Name=EsuBft741_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=345bp
MIEFFKRLRQYNLKLSPGKARVGATHANFLGHTISPAGVSPDGVKVRALT
HMPPPTNVKQLRSLLGGLSYYRKFLKNLATKVRPLNALLKQGVLFKYTPS
MIKVVKTLLSELTCPPILVFPDWAAVEDNSRPLRLCSDACIDGFGASLEQ
EQLDGSVRPIVYISRATLPAERNWTVLDLEAGGIVWAIKRLRGYLWSTKF
VIYSDHKALESIGKVGEHNARVQRWLEFLSNFTYTLKYRKGSANGNADFL
SRMPLPAQDTDKTGQDCIDGVDHAGXXXXXXXXXXXXXXXVSRGAVVERG
GFGCFCSRHIILPLTPYAKVYRFRMQHTLHESRRISHGASRLVMX
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mRNA from alignment at Scaffold_195:774331..775954+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft741_9a-0001 ID=EsuBft741_9a-0001|Name=EsuBft741_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1624bp|location=Sequence derived from alignment at Scaffold_195:774331..775954+ (Ectocarpus subulatus male Bft15b)
ATGATCGAGTTCTTTAAACGATTGCGCCAGTACAACCTCAAGCTGTCTCC
TGGGAAAGCTCGTGTTGGTGCCACTCACGCCAACTTCCTCGGACACACCA
TCTCCCCGGCAGGCGTTAGCCCGGACGGCGTCAAGGTTCGAGCGCTCACA
CACATGCCACCGCCGACGAATGTCAAACAGCTTCGGAGCCTTCTCGGTGG
ACTCAGCTACTACAGGAAGTTTCTCAAGAACCTCGCCACCAAGGTACGGC
CCCTCAACGCCCTTCTCAAACAAGGTGTCCTCTTCAAGTACACCCCGAGC
ATGATCAAAGTTGTCAAGACGTTGTTGAGCGAACTCACGTGCCCTCCGAT
TCTAGTTTTTCCTGATTGGGCGGCGGTCGAAGACAACAGCCGTCCTCTCC
GGTTATGCTCTGACGCGTGTATCGATGGCTTCGGCGCCTCTTTAGAACAA
GAACAGCTGGATGGCTCCGTGCGCCCCATCGTATACATCAGCCGTGCTAC
CCTCCCTGCGGAGCGCAACTGGACCGTTTTGGATCTGGAGGCTGGTGGGA
TTGTTTGGGCAATCAAACGCCTTCGCGGCTATCTGTGGTCGACCAAGTTC
GTCATCTACTCGGACCACAAAGCCTTAGAGAGCATCGGCAAGGTGGGGGA
ACACAACGCACGGGTGCAACGATGGCTCGAGTTTCTGTCCAACTTCACGT
ATACGCTGAAGTATCGGAAAGGTTCAGCGAATGGTAACGCCGATTTTCTT
TCGCGGATGCCTTTGCCGGCACAAGACACGGACAAGACTGGCCAGGATTG
CATTGATGGTGTTGACCACGCGGGTGTGTTTCTCATTCGAGCTTGCGGGC
TTCACTACCACTCGTCCTCCACGCCGGACGTCGGTTTGGGTGGGCTCACC
CCTCCTTGCTCTGCCGGAGTCTTCTCGCCCCCACCACTACAGCCTTCCGA
CTTTGGAGACTTTCGTCGACACGCCCCACGGATGATGGACGTCTCACCAC
CTTCGTCCTCTACTTGCACGGGTCATCAGCGACCTTCGGGAGTCTTCGCA
GTTTCCGAACTTGTCGGCTCTGCCCCGCGGCTGCCCTCTGTCGCATCTCG
TTTGGTGCCCTCTGTTGCATCCTCAGCGAACAAATATGTGCACGTCTTGT
CCTCGCTTCCGGAGCGTGGACCACTCATCTCCTCACGGACTCGGGCCAAG
ACTACCACTGCTTCCGGTGGTACCGTCACCGGCCCAGCTTACTTCGGACG
TCAACCGCGGGCTACCATCGTTCCTCGAACGCCGTCGCCTGTCCGTCGCT
CTAACAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTCGTCTCCCGCGGCGCCGTCGTCGAGCGTGGAGGTTTCGGCTGCTTCT
GCAGCCGACACATCATCCTGCCGCTGACGCCATATGCGAAGGTGTACCGA
TTCAGGTAAAAGTCAATCGACGGATACCCTGCGAACCGGGTCCTCCTTAA
CATACAGCTGTCAATGCGTTCGCAAGGAAATAAGCACAAGATGCCGAACA
CCCTTAGCAGGATGCAGCACACCCTTCATGAGAGTCGCCGGATATCTCAC
GGCGCTTCGCGCTTGGTGATGTNN
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Coding sequence (CDS) from alignment at Scaffold_195:774331..775954+

>EsuBft741_9a-0001 ID=EsuBft741_9a-0001|Name=EsuBft741_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1035bp|location=Sequence derived from alignment at Scaffold_195:774331..775954+ (Ectocarpus subulatus male Bft15b)
ATGATCGAGTTCTTTAAACGATTGCGCCAGTACAACCTCAAGCTGTCTCC
TGGGAAAGCTCGTGTTGGTGCCACTCACGCCAACTTCCTCGGACACACCA
TCTCCCCGGCAGGCGTTAGCCCGGACGGCGTCAAGGTTCGAGCGCTCACA
CACATGCCACCGCCGACGAATGTCAAACAGCTTCGGAGCCTTCTCGGTGG
ACTCAGCTACTACAGGAAGTTTCTCAAGAACCTCGCCACCAAGGTACGGC
CCCTCAACGCCCTTCTCAAACAAGGTGTCCTCTTCAAGTACACCCCGAGC
ATGATCAAAGTTGTCAAGACGTTGTTGAGCGAACTCACGTGCCCTCCGAT
TCTAGTTTTTCCTGATTGGGCGGCGGTCGAAGACAACAGCCGTCCTCTCC
GGTTATGCTCTGACGCGTGTATCGATGGCTTCGGCGCCTCTTTAGAACAA
GAACAGCTGGATGGCTCCGTGCGCCCCATCGTATACATCAGCCGTGCTAC
CCTCCCTGCGGAGCGCAACTGGACCGTTTTGGATCTGGAGGCTGGTGGGA
TTGTTTGGGCAATCAAACGCCTTCGCGGCTATCTGTGGTCGACCAAGTTC
GTCATCTACTCGGACCACAAAGCCTTAGAGAGCATCGGCAAGGTGGGGGA
ACACAACGCACGGGTGCAACGATGGCTCGAGTTTCTGTCCAACTTCACGT
ATACGCTGAAGTATCGGAAAGGTTCAGCGAATGGTAACGCCGATTTTCTT
TCGCGGATGCCTTTGCCGGCACAAGACACGGACAAGACTGGCCAGGATTG
CATTGATGGTGTTGACCACGCGGGTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTCGTCTCCCGCGGCGCCGTCGTCGAGCGTGGA
GGTTTCGGCTGCTTCTGCAGCCGACACATCATCCTGCCGCTGACGCCATA
TGCGAAGGTGTACCGATTCAGGATGCAGCACACCCTTCATGAGAGTCGCC
GGATATCTCACGGCGCTTCGCGCTTGGTGATGTNN
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