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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 55529.EKX50254 |
| ProteomeId | EsuBft1254_5 |
| Protein domains | SignalP-noTM |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | IPR018962 |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 8 |
| Max annot lvl | 2759|Eukaryota |
| Length | 181 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 5.4e-44 |
| EggNOG OGs | 2CISB@1|root,2S3S4@2759|Eukaryota |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-06_003330.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Domain of unknown function (DUF1995) |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1254_5a-0001 ID=EsuBft1254_5a-0001|Name=EsuBft1254_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1817bp|location=Sequence derived from alignment at Scaffold_195:666087..671628+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGCTTGTCTCGTGGTGTGATACCTCCCGCCTCTAGACACCGGCTGTCATG GGAAAGTGCACACCCCTCCTCTACGCGTCCGCACTCCTGCTCTTTCGTGT GCCGCTGGCGAGACCTTTCCTGGTTGGTTCCGGGTCGCGTTTGCAAGCTG GCAAGCCCAGCTGCTACCACTATGGACGACGACATGCATGCTCACGAGCC CCGACGAAGAACATGAAGATGTCCACTCCCAGCACACCTGTACCGCGCAA CATCAAGGATACGGTATCCTGTTTACGGGCCGCTGTGCAGGAAGGGCTCA AGGCGCAGCAGTCGCGCATGGACGTGGACCTGCCCTTCGCCGCTCGCCTA GGCGTGGAGACGTCCGATGAAGACAAAGACAAGAAGAAGTACACGGCTGC GGACGTGGAGCGAGCCGACCGAGAACTGGCGAGGCTGTTCCTCGAAATGT TCGACGTCATCGGAGACCAAGTGGTGGTGGCTTTTCCAACCGACGAAGAC GCGAAAAAGGCCATCAAGGTCTGGAGCAAGGGAGTCCCGTACAAGGGAAA GGTCACGTGCATGGACCCCAGGCCCGCCAAGGGGCCGAAGCTCAAGCGGG GGGACACCAACGCCCTCGCCGGCTTCGCGATGCAGGTCGAGGCCTCCAAG AAGGCCAAGAAAAAGAACAAGAAGGGCGGGAAGCAGCAGGGGGGGGGGGG CAAGGACATCGGGGGCGCCGCGGGCAGGACCGGGACGACGGCTAGAGTTG TCCCTCCAGGGACCGAGGTGTTGCTTGTTGTGGCCCCAAAGCAGCAGGAG CTGAAGGCGGTGCAAAAGATGTCCAACGACCTCGGCCAGGGGTGCTTGAT CGTCTTGCTGAACGCGCGCTTGCATCAGGCAGATTTCTTCGATGACGAAC AGCGGGAGTTCTTTGAGCAGGAGTTTGAGTCGATGTTCCACCTGAGACCT GTGGCGGCCGAAAACGAAGACTTTTTGTACCGGGCGTACCCCAAGGACTG GACGGTAGCGAGAAAGCCCAAGCTGGGACCCCCAAAGGTGTTGAGTGCCC AGAAACAGCGGCCTACGGAGGCGGAGATTCTGACGGCCGTCGAGAAGGGA GACAAAGCCGCCGGCGTCTTCGGCAACATCTTCTGAGGTCGCGTTCGTTG GGCGCCTTCCAAACCCACCTGTGCTTTGCGAGCGAGCGCCCTGAATATGG ACCTCAGCTTCGACAAGGAATGACGCATCGTACACATCGAAACGACTCTC GTGTTTGTTGTCGCTGTTTCGATCGTGGTTCGTTCACGTCGTGTCAACCC GAGCCTCCCACAAACCAACGCTGGTATGTTTCTGTTTCTTTTTCAACGCG CAGGTCAATCAACTGCGGCGTTGCTACACCGCAATGCAACATGCCCGTTG ATTTGTCGATAGAGTCAGATGTATTTGCAAGTCGTCCTCACGTATTGGCG ATCAAGACATGAGGTCTTGTTCGGGAACATGTGCGTAGCTTGCGGCAGAA GGTTCCGTGTCGACGAAGCATATTCGGTGGTAGTGTGGCGCGGTCGGTAC GGACACTTGTTTTTTTGTTGCCAGCTTAAGAAAACGAGGCGAGCTTTTCA GCAATGGCGTATCAATTGGTTCCAAGCGAAATGGGTAGGCCCAGTAGGTG TGAATACAGTGACGGTCGGGATCGGTCTAGGCCTACGTGGGTAGCGTGAG CAGGCTACGGAGGAGAAACCCCGGTGTGGCCGACCCATCACAACAGAGAA ATGTAGTACGCAATCGACACTACCACGAAACTTGAATTGAAAAATGAAAG ATATGCGACTATGTTAT back to topprotein sequence of EsuBft1254_5a-0001 >EsuBft1254_5 ID=EsuBft1254_5|Name=EsuBft1254_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=362bp
MGKCTPLLYASALLLFRVPLARPFLVGSGSRLQAGKPSCYHYGRRHACSR APTKNMKMSTPSTPVPRNIKDTVSCLRAAVQEGLKAQQSRMDVDLPFAAR LGVETSDEDKDKKKYTAADVERADRELARLFLEMFDVIGDQVVVAFPTDE DAKKAIKVWSKGVPYKGKVTCMDPRPAKGPKLKRGDTNALAGFAMQVEAS KKAKKKNKKGGKQQGGGGKDIGGAAGRTGTTARVVPPGTEVLLVVAPKQQ ELKAVQKMSNDLGQGCLIVLLNARLHQADFFDDEQREFFEQEFESMFHLR PVAAENEDFLYRAYPKDWTVARKPKLGPPKVLSAQKQRPTEAEILTAVEK GDKAAGVFGNIF back to topmRNA from alignment at Scaffold_195:666087..671628+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1254_5a-0001 ID=EsuBft1254_5a-0001|Name=EsuBft1254_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5542bp|location=Sequence derived from alignment at Scaffold_195:666087..671628+ (Ectocarpus subulatus male Bft15b) TGCTTGTCTCGTGGTGTGATACCTCCCGCCTCTAGACACCGGCTGTCATG
GGAAAGTGCACACCCCTCCTCTACGCGTCCGCACTCCTGCTCTTTCGTGT
GCCGCTGGCGAGACCTTTCCTGGTTGGTTCCGGGTCGCGTTTGCAAGCTG
GCAAGCCCAGCTGCTACCACTATGGACGACGACATGCATGCTCACGAGCC
CCGACGAAGAACATGAAGATGTCCACTCCCAGCACACCTGTACCGCGCAA
CATCAAGGATACGGTATCCTGTTTACGGGCCGCTGTGCAGGTGTGGTTGT
GCCCTGTCTTGAGGGGTAAAGGATTTTATGATAGCCTCTCTTCGTCGAAG
TTTGTCTTGGATCATGCGCAGAATTTCCAGTTCAACTGCCACCGCACCGC
CGTTACGCCGAACGGGTTGTCGACCGGCTGTAGTGGCAGTACAGATCCGA
AGGCGTGGACAGAAAGGCAAAGGCGATTGTATATATGGTATAATCTTCAA
AGGTGTCTGTTTCCTCGTGTGCTGTTGCACAGGGCAGCAAGGAAGGCAAA
CAAGGAAGCTGACGGTGTATATCAGACCCCCCCCGAATACAATACCCGTC
GGTTGACGCCCACGCGATCGACTTCGAACGCAAAACCCCAAAACACCCAT
CTAGGACGCGAATGCGCAAAGCTCGGATTAGAAACTCCAATGGTTCATCC
TCGGGATCGTATACACACCTCGCCTTCGACAACACCAAACGAGTGGGATC
GTCCCCGGGGAATCTGAAACAAAAATGAAGTACTTGTGTGTGGCGACTTC
AGCTGACGAAAGTGGCGGGCTCTCTGGTTGCCGCCCTCTTGCCTACTTGG
TACTCTGTGTCGCGTGGTACTGGGGCACAATGTTTGTGTCGCACAGGAAG
GGCTCAAGGCGCAGCAGTCGCGCATGGACGTGGACCTGCCCTTCGCCGCT
CGCCTAGGCGTGGAGACGTCCGATGAAGACAAAGACAAGAAGGTATGGTA
CGCATGCATGCACTCTGGCTCCATTGGAGGACTGAGCGCTTTGTGCGTAG
GGAATCGGCACGTGCCGGGTATCACGGTTCTGGGCTGCAATTTCGTCCCA
CCTTCCATGGAGAATCGCTCTAGAACGTTGCTACGGTGCATCTGCGAGTG
ACTCAGGTGGTAGGCTATTGTTGCGATAATAAACAGGGTTGGAAACTGTT
TTCCATTCTTCAGTGTGCGTTTGCATACCTCGATCGAGCATACTTTAATC
GTCAAATTGGTGTTTTACAGCGTGAAAATCTGCTGTGCTATTCCAGAACA
AGTGTACCGTAACCATTCCCGAAATGGACCACAACTTCGATAGTCATATC
TTAGCAAGTTCGACCGTTTTCTTTGGAAGACGCACTCCTTTAAGCCCGCA
AGGCTCGCGTGTTCGACATGAATTCGGGGCAAGTGGCACGCCCAGTACGA
ATGCAGTGACGGACGTTTTTGAAGTGTGAGCGCAAGACACGGAGAAGTTG
GATCTCGACATGATGTATGTTCTGCCGAGGGTTTGGTGATGTGGACGTAC
GCGTGAGTGTTTACGCTGTGATCGTGCAGGTTTCACTGATGATTAACTGC
TCGACGTCTAAATATTTTTATTGCGGTTTTGTCTCCGTCCCCCTCCCTTC
TCTATTCTCTCTCCGCTCTACCTGTTCCGCATGTGTTCTGTTGACGCAAT
TTTCTGTTGTTGTTGTCCCCTCCTGTTGCCTCCTGCTGTTCGGCCTTTGC
AGAAGTACACGGCTGCGGACGTGGAGCGAGCCGACCGAGAACTGGCGAGG
CTGTTCCTCGAAATGTTCGACGTCATCGGAGACCAAGTGGTGAGCATGCA
CGTGCGATTAGGCCTCGAATTTCACAATCTATCCGTTTTATTGGAGGCCT
TTCTGACAGGAGCTCCACATGTGAGCAAACTACTCCGATCGATTACATCA
TCTCTCCCGACACTCTTGTAATTTTGGAGACTATACCTACCCCTCCCATC
TCCTCCGCACCCCGAAAAACAACATCTGAAAAAAAGGTGGTGGCTTTTCC
AACCGACGAAGACGCGAAAAAGGCCATCAAGGTCTGGAGCAAGGGAGTCC
CGTACAAGGGAAAGGTCACGTGCATGGACCCCAGGCCCGCCAAGGGGCCG
AAGCTCAAGCGGGGGGACACCAACGCCCTCGCCGGCTTCGCGATGCAGGT
CGAGGCCTCCAAGAAGGCCAAGAAAAAGAACAAGAAGGGCGGGAAGCAGC
AGGGGGGGGGGGGCAAGGACATCGGGGGCGCCGCGGGCAGGACCGGGACG
ACGGCTAGAGTTGTCCCTCCAGGGACCGAGGTGTTGCTTGTTGTGGCCCC
AAAGCAGCAGGAGCTGAAGGTGCGGCTGCTCTCAAAATGTCGGTTCGGTG
CGGGCATGAGGGGGGATTCGTTGGGGGGTTATTCACGCGTGAACAATTAT
CTTTCGCCATGGAAGGGGGGAGGGGGGGAGGCGATGCATGTTAGGTGAAG
CGCGTGTGGCCAGGTTGCACCCTCGCCAGAGGCAACATGCAATGAGCCCA
CAGACGAGGTGATTGCAAAAAAAAACGAAACAAAAATGGCGCGGAAAGAG
CAAAACTACGGAAGGCAAGCACCCATTATTTTCGCCCGCCCGGGACGTGG
TGGTGGAATTGCTGCTGAAGTGAATTTAAAACCTATTGGGTCAGTGGAAG
CTGGGGCAAATCACCCTGGGACATGTGAAACTGTTGGTGTCCTCTGGAGA
AAGCAAATATTTCGCTGATATCTCTCAACCTTTTCGGTCGACCGCCGATG
GAACCGCTCTTGCGGTCGCGTGGGTGTGCTTGTCGGGGCAGGCGGTGCAA
AAGATGTCCAACGACCTCGGCCAGGGGTGCTTGATCGTCTTGCTGAACGC
GCGCTTGCATCAGGTGGGCTCACGAAGAAGGCGACATGCTCTGCGCGTGG
GAAGTGGGCTCGTTTTGCTGTCTAGCTACTGGCTCGTTGGGCGCAGTGAT
CGTACGCATTGCTGCTGTTGGTGCTGTAGGTGTTGCCTTGTGTTGGTGTT
GTTGTCGGTACAAGATAGGCTAGTTTTTGGTACGAGCGCACTCCTTGGCT
CTTTTCATGTCACCGACCAACCGTTCTAGAGCTTCGGGTGGTTTGTTTAG
ATCTTCGGTGTCTATGATCGAGACCGTGCACATGGTCTTCGACCGCCGGA
TACCATTCCAGCGAGTGCGCCGCTTCAACGTCGATCTGACCGTGGCGTTT
AACTCGACCACAGAGGGGCTCACTCCTCCTCCCCCTCCCGTCCCTCACCA
TTTTATTCAACCCGCACTGCCGCGTTAAAATCCTCCAGGCAGATTTCTTC
GATGACGAACAGCGGGAGTTCTTTGAGCAGGTGAGGCGTTTTCGACTAAT
GCCTTGACGTATGGTACTCCCCAAGGGTTTCGGATCAATGTCGCTCTCGT
GTTTTTGGTGGGTCACACCGCAGCACGGGGTGGATAGATTCAAGATTTTG
TTTGAAATGACAGGAAAAACGCCGCCACAGACGCGCTTTGTTATCCCGTA
GAAGGAGGCGGTCTAGAAATCGTGTATTTCGACCTGCATCGAAGACACCG
ACCGACAGTTTTCCTTCGGTACTTGTGTTTTTTTAGTACCTGCAGCCTCT
TTGTCATGCCCGTGCGGCGAGTATTAGATGCGCGGACGCTAAAAGAACAA
ACAGCGTGCGTTTGTTATACAAGCCTCTTGTTGAATAGAAGTAGTTTCCA
TTTAGAGAAGGCCGCGAAGTCGTTGGCCATGATTCGCTGACAAGAGGGAC
TTTTGACTTTTTCCGTGAAGCTTATTAAGTCTGCCCCCAACTACATAGGG
CCGCCCGCCTATCTCGCTGCCTCCCTCATTCTGTTGCGGAATTCTCTACT
CGTGCTTCTTGATTTGAGGATCTCTTAACATGCGAAGAGGCGATTAGGCC
ACCTCGTGAAACGGGGCCGACGAAAGACTCGCTTTCTTTCCTTGTGCTTA
ATCTCCTTCCAACACGTAATCCCGGTTGTATTTTTCATCCAGGAGTTTGA
GTCGATGTTCCACCTGAGACCTGTGGCGGCCGAAAACGAAGACTTTTTGT
ACCGGGCGTACCCCAAGGACTGGACGGTAGCGAGAAAGCCCAAGCTGGGA
CCCCCAAAGGTAAGAAGGGAGGTCATCGGTACACACCGCCATCTGAACGA
AAGTGGCCACAACCAGAGTCCGATTGAATTCACAATTGCTGTCTCGGCGA
CGCCACGATCAGATCAAACTGACCGCCCACTGCTGCTTTCTTTGTTCGAT
CCACGTTCTCGGAACCGCACTTCGAGACACTCCCACTTGCGCACTTGGTT
GTAGTTGTTTTTCTTTACCTAGCGCTGTACGCCAACGTCTGTCAATATTG
TCGTTCATTGAAGTGATCAGAGTACCAGTACATGTGATGTTGCAAGCGAG
ATTTGAGTTTTCCTCACAATCTGAGATTGGTTTTGAAGGGATAGATGAGA
CAAAAAGATGTACGGTCGACAGGACAACGACGTGAGGCGAGAGGAGGTAA
AACGAAGGGCTCCGGAAAACATAGCAGAGGGGAAAAAACGTGTCGTTTGC
TTGGTACCAATGCCGAGATGCAACTATACGAGTCAGCATTCCAGACCAAC
GTTTTAACCATGTGCACCAACAGTGTCTTGCCGAGCACGTGCGTGGAACC
ACAGCTGCCTGTCTGTCTGCCGATGTGTTCTCGTATCGCCCCGTCCGTCG
ATAATTTCGCAGGTGTTGAGTGCCCAGAAACAGCGGCCTACGGAGGCGGA
GATTCTGACGGCCGTCGAGAAGGGAGACAAAGCCGCCGGCGTCTTCGGCA
ACATCTTCTGAGGTCGCGTTCGTTGGGCGCCTTCCAAACCCACCTGTGCT
TTGCGAGCGAGCGCCCTGAATATGGACCTCAGCTTCGACAAGGAATGACG
CATCGTACACATCGAAACGACTCTCGTGTTTGTTGTCGCTGTTTCGATCG
TGGTTCGTTCACGTCGTGTCAACCCGAGCCTCCCACAAACCAACGCTGGT
ATGTTTCTGTTTCTTTTTCAACGCGCAGGTCAATCAACTGCGGCGTTGCT
ACACCGCAATGCAACATGCCCGTTGATTTGTCGATAGAGTCAGATGTATT
TGCAAGTCGTCCTCACGTATTGGCGATCAAGACATGAGGTCTTGTTCGGG
AACATGTGCGTAGCTTGCGGCAGAAGGTTCCGTGTCGACGAAGCATATTC
GGTGGTAGTGTGGCGCGGTCGGTACGGACACTTGTTTTTTTGTTGCCAGC
TTAAGAAAACGAGGCGAGCTTTTCAGCAATGGCGTATCAATTGGTTCCAA
GCGAAATGGGTAGGCCCAGTAGGTGTGAATACAGTGACGGTCGGGATCGG
TCTAGGCCTACGTGGGTAGCGTGAGCAGGCTACGGAGGAGAAACCCCGGT
GTGGCCGACCCATCACAACAGAGAAATGTAGTACGCAATCGACACTACCA
CGAAACTTGAATTGAAAAATGAAAGATATGCGACTATGTTAT back to topCoding sequence (CDS) from alignment at Scaffold_195:666087..671628+ >EsuBft1254_5a-0001 ID=EsuBft1254_5a-0001|Name=EsuBft1254_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1089bp|location=Sequence derived from alignment at Scaffold_195:666087..671628+ (Ectocarpus subulatus male Bft15b) ATGGGAAAGTGCACACCCCTCCTCTACGCGTCCGCACTCCTGCTCTTTCG TGTGCCGCTGGCGAGACCTTTCCTGGTTGGTTCCGGGTCGCGTTTGCAAG CTGGCAAGCCCAGCTGCTACCACTATGGACGACGACATGCATGCTCACGA GCCCCGACGAAGAACATGAAGATGTCCACTCCCAGCACACCTGTACCGCG CAACATCAAGGATACGGTATCCTGTTTACGGGCCGCTGTGCAGGAAGGGC TCAAGGCGCAGCAGTCGCGCATGGACGTGGACCTGCCCTTCGCCGCTCGC CTAGGCGTGGAGACGTCCGATGAAGACAAAGACAAGAAGAAGTACACGGC TGCGGACGTGGAGCGAGCCGACCGAGAACTGGCGAGGCTGTTCCTCGAAA TGTTCGACGTCATCGGAGACCAAGTGGTGGTGGCTTTTCCAACCGACGAA GACGCGAAAAAGGCCATCAAGGTCTGGAGCAAGGGAGTCCCGTACAAGGG AAAGGTCACGTGCATGGACCCCAGGCCCGCCAAGGGGCCGAAGCTCAAGC GGGGGGACACCAACGCCCTCGCCGGCTTCGCGATGCAGGTCGAGGCCTCC AAGAAGGCCAAGAAAAAGAACAAGAAGGGCGGGAAGCAGCAGGGGGGGGG GGGCAAGGACATCGGGGGCGCCGCGGGCAGGACCGGGACGACGGCTAGAG TTGTCCCTCCAGGGACCGAGGTGTTGCTTGTTGTGGCCCCAAAGCAGCAG GAGCTGAAGGCGGTGCAAAAGATGTCCAACGACCTCGGCCAGGGGTGCTT GATCGTCTTGCTGAACGCGCGCTTGCATCAGGCAGATTTCTTCGATGACG AACAGCGGGAGTTCTTTGAGCAGGAGTTTGAGTCGATGTTCCACCTGAGA CCTGTGGCGGCCGAAAACGAAGACTTTTTGTACCGGGCGTACCCCAAGGA CTGGACGGTAGCGAGAAAGCCCAAGCTGGGACCCCCAAAGGTGTTGAGTG CCCAGAAACAGCGGCCTACGGAGGCGGAGATTCTGACGGCCGTCGAGAAG GGAGACAAAGCCGCCGGCGTCTTCGGCAACATCTTCTGA back to top
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