EsuBft1254_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1254_7a-0001
Unique NameEsuBft1254_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:652100..656506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LPZ1
ProteomeIdEsuBft1254_7
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsCoil
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length195
Hectar predicted targeting categoryother localisation
Evalue1.99e-99
EggNOG OGsKOG3676@1|root,KOG3676@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptioncalcium ion transmembrane transport
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1254_7aEsuBft1254_7aEctocarpus subulatus male Bft15bgeneScaffold_195 652100..656506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1254_7a-0001EsuBft1254_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 652100..656506 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1254_7a-0001-exonagat-exon-9734Ectocarpus subulatus male Bft15bexonScaffold_195 652100..652107 +
EsuBft1254_7a-0001-exonagat-exon-9735Ectocarpus subulatus male Bft15bexonScaffold_195 653617..654553 +
EsuBft1254_7a-0001-exonagat-exon-9736Ectocarpus subulatus male Bft15bexonScaffold_195 655403..655580 +
EsuBft1254_7a-0001-exonEsuBft1254_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 655638..656147 +
EsuBft1254_7a-0001-exonagat-exon-9733Ectocarpus subulatus male Bft15bexonScaffold_195 656190..656506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1254_7a-0001-cdsEsuBft1254_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 652100..652107 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1254_7a-0001 ID=EsuBft1254_7a-0001|Name=EsuBft1254_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1950bp|location=Sequence derived from alignment at Scaffold_195:652100..656506+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAGCGCTCAATTTTCAATATGGGCTAGTGCTGGACTTGGCAAGTG
GGACGGTATCGCACTGCTTCTGAAGAATTATGCATGTCCGTCTCCTGAAG
ACCTCATTGATCTCTCTCGCAAGCACCCTTCTGACGAGCGGCTGCACGAC
TGCTGTTTGAGAGTTGTAGCCGCGTCAGACAACCTGTTCATTTCCGGCAT
GACTTTGTCTGTGGCACGCGTGGATGTGACGAAGAAAGCTCCAGAGGGAG
AGAGGGGTACCCTTGAGGCCATCCAGGGCCATGTACATGCCTTACTGCTT
GAAATTCTCGAACGCTTGCCTCAAACAGTCAATGGTTTCAACGGAGGAAT
GGCCGACTGCTCAGCCGTGTTAGGGCCAGAGTTCGACAGCAAAACGGGAG
AATCTACGGGCTTCAAGCCACCGCTGGCCCTGCTCCTCCTGGCGAACAGT
ATTCAGACGGAAACGTTTTGCTCGACGCCCTTAATCATGGACTACTTGTC
ACGGAAATTCACGCATGGTCTGCCCGACGTGGGCGACAAGGACGGCGTGC
TTCGGAATGGCACAGAACATGATGTGCTGAGCGGCAGTGGGCCAGGCATG
ATGTCCCTGGTCATTGGTGGTGGCGATGACGAAGAACTGGACGAAAGAGG
TTATCACGAATTCCGACACAAGGATCTTCTGGTCAAGAATGGCCTAAAGG
CCAGCTTTGAATCCCCTCGTGCGTTGCTTCAGGGAGCGAATGATAGGCTT
GCCAGCCTGACGTTTCTTCCTGGGGCTCAATTTGCGATCGCAGGATTTCT
GGCGAAGCCTAACAACTACTATCGAATCCCCGCTGTGAGGATGGTGCTAG
ACGTTGTGGTGTACCTCTTGGTGATCATTGCGTTGAGCATCCTGGTCTTC
CGCGACAGCGGGTCGCTGACACGGGGAGAGGGCATCGCCGCGGCTGTTAT
TTTCGCGATGACGGCTCAGCTCGTGAGGTTCGGGATTGTGATGTTGGTTG
TCATGGTCGGATTCGCCATGTCCCTGCACGTGCTGATTCGCGACTCCAAA
AGCTTTGGTGAAACGTTTGTCGCACTATTCAAAGCGACGCTTGGTGACGT
GGACTACTTCACGGCGTCCTCTGTGCTCAACCTGCTGGTTGCGATATTGA
CCGTATCGCACTCCAAGGTACAGGAGAACGTTCAACGGGAGTTCAAGGTT
TCGAAGGCGCGCATGATCCAGCGATGCCGATGGACTGTAGAAAACGACTG
GCTTCCTGCCCCGTTCAACGTGGCACAGCTACTTTTCTCGGGGCAATACG
CGTTGGTGATGCCCAGCTTTCGGCGGAAACGGTATGATGAAGCAAAGCAA
GCCATTGGTCAGGCAGTGTCCTGGTTTGTGCTCGGTCTAATGGCTTTTGT
GGGGGGATCGATTCTCTGGATATTGTCGGTTGTGTACGCACTCTTTGTGT
GGCATGAGCACTACTACGTAGGGCTAGACACGCATACTGCTCACGTTATA
ATACTTCAAACTGAGCCTGGGAGCAACGATACTGCGGTATATCCTTATCC
CTGTGTGGTGCGTCTTGGATGCTCCGTTGTGTCGTTTCCTGCTCGGGGTC
AAGACGCTTCTACTCGGGCAAGTAGCGGGGGAGATGGCATGCTTAAGAGT
GCCGATCAGGGAGTAGGAATGGCAAAATTGCGCGAATTCCTCGCCGACCC
AATGAACAACAGAGATGTTCGTAAGGCCGGGACGACAAGGAGCACCACCG
TGGAACACCTTAAACTTCTTAGGGACCGCCTAGTGAAAGACATTGTAGGT
AGGCTCTGCAGACTTTTGAGAAAAGGGAAGGCATGGCCCAAACACTTGAT
TGAGGCTTTCGATCAGCGCTTGCAACAACTCGAAGCAAAGGTTGCCGAGA
CCAATGATTACCTAATTGAAATTTTGAAGTTCGTCAAGAACCCACGGTGA
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protein sequence of EsuBft1254_7a-0001

>EsuBft1254_7 ID=EsuBft1254_7|Name=EsuBft1254_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=649bp
MTSAQFSIWASAGLGKWDGIALLLKNYACPSPEDLIDLSRKHPSDERLHD
CCLRVVAASDNLFISGMTLSVARVDVTKKAPEGERGTLEAIQGHVHALLL
EILERLPQTVNGFNGGMADCSAVLGPEFDSKTGESTGFKPPLALLLLANS
IQTETFCSTPLIMDYLSRKFTHGLPDVGDKDGVLRNGTEHDVLSGSGPGM
MSLVIGGGDDEELDERGYHEFRHKDLLVKNGLKASFESPRALLQGANDRL
ASLTFLPGAQFAIAGFLAKPNNYYRIPAVRMVLDVVVYLLVIIALSILVF
RDSGSLTRGEGIAAAVIFAMTAQLVRFGIVMLVVMVGFAMSLHVLIRDSK
SFGETFVALFKATLGDVDYFTASSVLNLLVAILTVSHSKVQENVQREFKV
SKARMIQRCRWTVENDWLPAPFNVAQLLFSGQYALVMPSFRRKRYDEAKQ
AIGQAVSWFVLGLMAFVGGSILWILSVVYALFVWHEHYYVGLDTHTAHVI
ILQTEPGSNDTAVYPYPCVVRLGCSVVSFPARGQDASTRASSGGDGMLKS
ADQGVGMAKLREFLADPMNNRDVRKAGTTRSTTVEHLKLLRDRLVKDIVG
RLCRLLRKGKAWPKHLIEAFDQRLQQLEAKVAETNDYLIEILKFVKNPR
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mRNA from alignment at Scaffold_195:652100..656506+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1254_7a-0001 ID=EsuBft1254_7a-0001|Name=EsuBft1254_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4407bp|location=Sequence derived from alignment at Scaffold_195:652100..656506+ (Ectocarpus subulatus male Bft15b)
ATGACCAGGTAAGTGGTCGTGTAGGTCATCACGTGTGCTATGGTCAACTA TCGTAATGAATGAGCGCCCGCAACTCGTGCGGATGGGTGCGGGCTCGTAG CTCGCGTCGTTCATCATCTTATGACCAGGACACATCTAATGAGTTTGCCA TGACCCTGGTGATCTCACCTCCGAGCACCTTGTGTTCCCGACCCAAGAGA CTACCTTGTCTGGTTTTCGATAGGTGAGCCAGTCCATCGTGATACTCTGT ATTCGCGTCGGCAAATGATCTTGAGCCAATCGACCTGGTTGGCGCAGCTT GTGGTTGTTTCGAAAGTGCTCGGTCCAAAACACCCTCGCTCCGTCGATCG CTCATGGGCACGTTTCATATCTCGTCGCCTTGGGTGAGCTTTTTTTGTCC CTCCCGATTTGCTTGGTTCTGGCCGGTCTAGTTTACCAGTAGGTCAGTTT CCTCCACAAGAGGTTTCTCAATCACCGGCCCGTACTGTAGTTGTTCGTCA TAGTTTGAATGTATCGAAGGAGCCCCACAAGCGCTGGCTACAATCGTCCC GTCGCGTGACACGTGCACTGAAGTTTGTTCCCGCTCGCCATGAGCTCCAA GTGGTGAATGTATCCGTCAACGTTGAATGATGTGAGGGACCATTCGAGGG TCGGAATAACCGAAAGGCAGCGTTTGCACATCGATGGAGGCCCTTCGCTA TCCCCCGTACGCCATGCAGCTCATTGAACTGATCATGGCAAGGGAGGGTT TCGGCATGTCACTCCTGGGTTGCACCGTCGTTACAAGACGCCGTCACTAT GGATATTCCAAGGATACTTTATGTAAGACTGTTTTTTCTTTCTTTTTTCC ATGATAGTCGACAGAGAGGTATCTCTACTGGCAACGTCACCGTCAGGCGG GTGCGAAATGGTTTGCCAGATTGTTGAAACCTAACAAAGTGAAGGAGAGT CCTCCGGTGTGGTAGGAGCGTCGGGAACATCCTTTGGACAAAGGTTTCTC TTGTGGATACGAGTGCTTTGTTTCGTCTATGATGTTTGTGGAAAACTTGA ATCAACGCGTCCCGGATTCTTGAACGTGTGAAAGTTACTTCGAGCACGGT GGTTCCGCTTTATTTCTTTCAGACTTGCTGCGCCATGCGCCTTACCTTGT ATTGTAGGATCTTCCGACTATGTCCTGGTGGACGCAGATTTGATTCAGTT TCCTATCTATTTTGGATGGTATGAAGGTCATGTCTCAAGGTGAACAAAAA TACAATGAACTGATGGTGACAAAAATCGTCTGCTCGCGCAATCGGGCGAA ATATTGACTACATCGTAGTGAGGCTTTTGCTCTCGCTTTCGCATCTTCTT ATTGTGGGGTATTGTGAATCAAGTCGCTCCATTTGGTGGCTGCGCCTTCT CACGGAGATCGGCACGGTGCCAGGTTTTTGCTCATGACCAAGATACCATT CCCGCACGGAGTGTCGGTCCCCTTTTCCACCTTTAGTTGTGCAACTGCAA GTGGCAGACGAACTCAGCGCTCAATTTTCAATATGGGCTAGTGCTGGACT TGGCAAGTGGGACGGTATCGCACTGCTTCTGAAGAATTATGCATGTCCGT CTCCTGAAGACCTCATTGATCTCTCTCGCAAGCACCCTTCTGACGAGCGG CTGCACGACTGCTGTTTGAGAGTTGTAGCCGCGTCAGACAACCTGTTCAT TTCCGGCATGACTTTGTCTGTGGCACGCGTGGATGTGACGAAGAAAGCTC CAGAGGGAGAGAGGGGTACCCTTGAGGCCATCCAGGGCCATGTACATGCC TTACTGCTTGAAATTCTCGAACGCTTGCCTCAAACAGTCAATGGTTTCAA CGGAGGAATGGCCGACTGCTCAGCCGTGTTAGGGCCAGAGTTCGACAGCA AAACGGGAGAATCTACGGGCTTCAAGCCACCGCTGGCCCTGCTCCTCCTG GCGAACAGTATTCAGACGGAAACGTTTTGCTCGACGCCCTTAATCATGGA CTACTTGTCACGGAAATTCACGCATGGTCTGCCCGACGTGGGCGACAAGG ACGGCGTGCTTCGGAATGGCACAGAACATGATGTGCTGAGCGGCAGTGGG CCAGGCATGATGTCCCTGGTCATTGGTGGTGGCGATGACGAAGAACTGGA CGAAAGAGGTTATCACGAATTCCGACACAAGGATCTTCTGGTCAAGAATG GCCTAAAGGCCAGCTTTGAATCCCCTCGTGCGTTGCTTCAGGGAGCGAAT GATAGGCTTGCCAGCCTGACGTTTCTTCCTGGGGCTCAATTTGCGATCGC AGGATTTCTGGCGAAGCCTAACAACTACTATCGAATCCCCGCTGTGAGGA TGGTGCTAGACGTTGTGGTGTACCTCTTGGTGATCATTGCGTTGAGCATC CTGGTCTTCCGCGACAGCGGGTCGCTGACACGGGGAGAGGGCATCGCCGC GGCTGTTTCATAGCGGTGAGTTGAGGTCGCGGGCGGGCGGTCAACCACTG TTGTTGCCAGCGCACTCTCCAGGTTCGATGTGTGGGCACTTCGCCGACTC CTTTATTCGCGAAACCCGTTGAGGTCGGTTTTTGTTTCGATTCTTTTTTG ACTGCAGCCAAATATTCGTGCGGCTGCGTCCGAGCCTCGGTCATGGCCTC GTTGTGCTTGGGAAATTAAACCGCAAACTACCAGATTGTTTGTTTCGCGG CTCATCGGCTTATTCTCGCTTCCGTGCGTACCTCTCCAAAAATCTTGCCG GGTCGGCCGTTTCAGACAAGAACTTTGAGAGAGAAGCGCGAGCTTCACAA CTGCGTCAAGGAACCTGGTGCCTTGTGGACCGGTGTAGGGGTATTCTTCC AAGACCCATGGAACGCTGTTGACGTGATGGGGTGGCAGCTCCAAGTGCCG GCTTGGTCGTCCGCGGCTTAGATGGTGCCAGTTCAATGGGGCAAGGGTTG TACGCCCTAAGTGCTCCGCTGTTCGTTGCACGCGTCCTCTTTTTCGCGCA GATCCTCCCTTCCCAAAGACCAATGATTCAGGCAAGCGGCTATCGTATAC CTGTCTGTGTTTCTCTCGGACCGCCTTCGTTGTTGATGTTGTTCAAAGTG GATCAGACCTGAAATTCCGTCGCCTTTATGCGTTTGGAGGACGTGCGGCC TCCGATCACTTCCCATGGCGGCAAAGGCAGCAAGGGGAAAAGGCACAACG GTCCATTGGTTTTCGTAGCAGTAGCAGTTATGATGTCTTGGAATGTATGA GCATCTCGCAATCCAATGGCCACCACGATGTCCCCTTCGCACTCTTGGCG CAGGTTATTTTCGCGATGACGGCTCAGCTCGTGAGGTTCGGGATTGTGAT GTTGGTTGTCATGGTCGGATTCGCCATGTCCCTGCACGTGCTGATTCGCG ACTCCAAAAGCTTTGGTGAAACGTTTGTCGCACTATTCAAAGCGACGCTT GGTGACGTGGACTACTTCACGGCGTCCTCTGGTGGCCGGCACGAACGGTG GGGACAATTCTTATCGTGACATCTGGTGGTGGTCACAGTGCTCAACCTGC TGGTTGCGATATTGACCGTATCGCACTCCAAGGTACAGGAGAACGTTCAA CGGGAGTTCAAGGTTTCGAAGGCGCGCATGATCCAGCGATGCCGATGGAC TGTAGAAAACGACTGGCTTCCTGCCCCGTTCAACGTGGCACAGCTACTTT TCTCGGGGCAATACGCGTTGGTGATGCCCAGCTTTCGGCGGAAACGGTAT GATGAAGCAAAGCAAGCCATTGGTCAGGCAGTGTCCTGGTTTGTGCTCGG TCTAATGGCTTTTGTGGGGGGATCGATTCTCTGGATATTGTCGGTTGTGT ACGCACTCTTTGTGTGGCATGAGCACTACTACGTAGGGCTAGACACGCAT ACTGCTCACGTTATAATACTTCAAACTGAGCCTGGGAGCAACGATACTGC GGTATATCCTTATCCCTGTGTGGTGCGTCTTGGATGCTCCGTTGTGTCGT TTCCTGCTCGGGGTCAAGACGCTTCTACTCGGGCAAGTAGCGGGGGAGGT ACACCCTGCCGAACCGGGTAGTCTATACCGGTAACAGTAGATGGCATGCT TAAGAGTGCCGATCAGGGAGTAGGAATGGCAAAATTGCGCGAATTCCTCG CCGACCCAATGAACAACAGAGATGTTCGTAAGGCCGGGACGACAAGGAGC ACCACCGTGGAACACCTTAAACTTCTTAGGGACCGCCTAGTGAAAGACAT TGTAGGTAGGCTCTGCAGACTTTTGAGAAAAGGGAAGGCATGGCCCAAAC ACTTGATTGAGGCTTTCGATCAGCGCTTGCAACAACTCGAAGCAAAGGTT GCCGAGACCAATGATTACCTAATTGAAATTTTGAAGTTCGTCAAGAACCC ACGGTGA
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Coding sequence (CDS) from alignment at Scaffold_195:652100..656506+

>EsuBft1254_7a-0001 ID=EsuBft1254_7a-0001|Name=EsuBft1254_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1950bp|location=Sequence derived from alignment at Scaffold_195:652100..656506+ (Ectocarpus subulatus male Bft15b)
ATGACCAGCGCTCAATTTTCAATATGGGCTAGTGCTGGACTTGGCAAGTG
GGACGGTATCGCACTGCTTCTGAAGAATTATGCATGTCCGTCTCCTGAAG
ACCTCATTGATCTCTCTCGCAAGCACCCTTCTGACGAGCGGCTGCACGAC
TGCTGTTTGAGAGTTGTAGCCGCGTCAGACAACCTGTTCATTTCCGGCAT
GACTTTGTCTGTGGCACGCGTGGATGTGACGAAGAAAGCTCCAGAGGGAG
AGAGGGGTACCCTTGAGGCCATCCAGGGCCATGTACATGCCTTACTGCTT
GAAATTCTCGAACGCTTGCCTCAAACAGTCAATGGTTTCAACGGAGGAAT
GGCCGACTGCTCAGCCGTGTTAGGGCCAGAGTTCGACAGCAAAACGGGAG
AATCTACGGGCTTCAAGCCACCGCTGGCCCTGCTCCTCCTGGCGAACAGT
ATTCAGACGGAAACGTTTTGCTCGACGCCCTTAATCATGGACTACTTGTC
ACGGAAATTCACGCATGGTCTGCCCGACGTGGGCGACAAGGACGGCGTGC
TTCGGAATGGCACAGAACATGATGTGCTGAGCGGCAGTGGGCCAGGCATG
ATGTCCCTGGTCATTGGTGGTGGCGATGACGAAGAACTGGACGAAAGAGG
TTATCACGAATTCCGACACAAGGATCTTCTGGTCAAGAATGGCCTAAAGG
CCAGCTTTGAATCCCCTCGTGCGTTGCTTCAGGGAGCGAATGATAGGCTT
GCCAGCCTGACGTTTCTTCCTGGGGCTCAATTTGCGATCGCAGGATTTCT
GGCGAAGCCTAACAACTACTATCGAATCCCCGCTGTGAGGATGGTGCTAG
ACGTTGTGGTGTACCTCTTGGTGATCATTGCGTTGAGCATCCTGGTCTTC
CGCGACAGCGGGTCGCTGACACGGGGAGAGGGCATCGCCGCGGCTGTTAT
TTTCGCGATGACGGCTCAGCTCGTGAGGTTCGGGATTGTGATGTTGGTTG
TCATGGTCGGATTCGCCATGTCCCTGCACGTGCTGATTCGCGACTCCAAA
AGCTTTGGTGAAACGTTTGTCGCACTATTCAAAGCGACGCTTGGTGACGT
GGACTACTTCACGGCGTCCTCTGTGCTCAACCTGCTGGTTGCGATATTGA
CCGTATCGCACTCCAAGGTACAGGAGAACGTTCAACGGGAGTTCAAGGTT
TCGAAGGCGCGCATGATCCAGCGATGCCGATGGACTGTAGAAAACGACTG
GCTTCCTGCCCCGTTCAACGTGGCACAGCTACTTTTCTCGGGGCAATACG
CGTTGGTGATGCCCAGCTTTCGGCGGAAACGGTATGATGAAGCAAAGCAA
GCCATTGGTCAGGCAGTGTCCTGGTTTGTGCTCGGTCTAATGGCTTTTGT
GGGGGGATCGATTCTCTGGATATTGTCGGTTGTGTACGCACTCTTTGTGT
GGCATGAGCACTACTACGTAGGGCTAGACACGCATACTGCTCACGTTATA
ATACTTCAAACTGAGCCTGGGAGCAACGATACTGCGGTATATCCTTATCC
CTGTGTGGTGCGTCTTGGATGCTCCGTTGTGTCGTTTCCTGCTCGGGGTC
AAGACGCTTCTACTCGGGCAAGTAGCGGGGGAGATGGCATGCTTAAGAGT
GCCGATCAGGGAGTAGGAATGGCAAAATTGCGCGAATTCCTCGCCGACCC
AATGAACAACAGAGATGTTCGTAAGGCCGGGACGACAAGGAGCACCACCG
TGGAACACCTTAAACTTCTTAGGGACCGCCTAGTGAAAGACATTGTAGGT
AGGCTCTGCAGACTTTTGAGAAAAGGGAAGGCATGGCCCAAACACTTGAT
TGAGGCTTTCGATCAGCGCTTGCAACAACTCGAAGCAAAGGTTGCCGAGA
CCAATGATTACCTAATTGAAATTTTGAAGTTCGTCAAGAACCCACGGTGA
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