EsuBft1254_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1254_9a-0001
Unique NameEsuBft1254_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:646407..648275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog225117.XP_009356290.1
ProteomeIdEsuBft1254_9
Protein domainsIPR012337
Protein domainsIPR001584
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl35493|Streptophyta
Length1798
Hectar predicted targeting categoryother localisation
Evalue1.67e-15
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37ITA@33090|Viridiplantae,3GHQJ@35493|Streptophyta,4JTP0@91835|fabids
Date last modified2016-06-14
Date creation2016-06-14
Descriptiongag-polypeptide of LTR copia-type
COG categoryO
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0003824
GO0015074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1254_9aEsuBft1254_9aEctocarpus subulatus male Bft15bgeneScaffold_195 646407..648275 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1254_9a-0001-exonagat-exon-9738Ectocarpus subulatus male Bft15bexonScaffold_195 646407..647097 +
EsuBft1254_9a-0001-exonEsuBft1254_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 647169..648275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1254_9a-0001-cdsEsuBft1254_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 646407..647097 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1254_9a-0001-exonagat-three_prime_utr-2410Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_195 647864..648275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1254_9a-0001EsuBft1254_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 646407..647863 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1254_9a-0001 ID=EsuBft1254_9a-0001|Name=EsuBft1254_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1798bp|location=Sequence derived from alignment at Scaffold_195:646407..648275+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGATGAATTGGATTGCCTGGAGGGTTTTGTTGCTGGATGCAGTGA
GCAGCAAACCGTAGCTCCCCCCTCCCTCTCGCATGCCTTGGCGATTATCG
CCCCCGGTGCTTGCCCGTTTTCGGTAGGAAAATCCACGCCGACCATTGAC
AGTTGTTTGTTCCATGCCTCCACCGGCCATGCAAACGAGTTTTTGATGCG
TGAAACGGCCAAGCAGCAGGGCGTACGACTGGTGGGGGAGATGCAGCCAT
GTGTGGGCTGCGTGGAGGCGAAGGGCAGGCGGGAACCGGTGCCGCGGCGT
GGTACCCTCGCGGCGGTACCGTTCGGCAAAGTCCACATCGACCTCACGGG
CCCGTTCTCTGACGCGCTGGACGGCTCCCGGTACCTGATCATGTTCGTGG
ACAGCGCGTCGCGGTGGCAACGGGGGTACGGGATGCGGCCAAAGAGCGAC
ACCCTGAAGTTTGTGCAGCGGTTCTTCGCCGACATGAACGGCATGAGCAC
TCCGGGGTGTTTCCGCAAGTACAACGGCGGCGAGTTCACCGGCTCCGCGT
TCACCTCGTTCTGCGACGCTGCTGGCATTCGGCGCGAGTACACCGCCCCC
GACACCCCCAAGCAAAACGCGGTGGTCGAGAGCGCCATTCCGCCGTACCT
GCGGCCGATGCCGCACCGCCGCCGCCCCTGCCATCAAGAACGATCCTCAG
CCCCGTCGCCGATCTCCGACGCCCCATCATCAGCCCCACCGTCGACCGCA
ACAACGCCGCCCCGTTCCCCCCCGGGCCTGCCGCCGCCGCCGCCGCAGCC
CACCAGCGCCGCCACCCCCGCTCCCCCGCACCCGCCGCTTTCGAAACGAG
CCGTGAAGGAGTTGGGACGAAAGGACACGAGGGTACACGGCCGCACGCGC
GGCGATGGAGTGCGGTTCATGGAGGAACAACAACAACCGCCGTCCGGTAG
CGGCACCGCTCTCCACCAACGTCTTGGTCTGTTGGCGATGATGGACAAGG
ACTCCCTCATCTCGTCGCTCGCCACTCGAGAGGCCGTGGATCAAGGACGC
CGCGACCTGCCGCCCCCGCCGCAGCCGGATCCGAGTCTTGGAGGCCGTGG
AAGCGGGGGGGCTGTGGGAGCTGGGAGGCCCGTGGATTCTGGGAGGGGAT
GGAGACCGCAGATGTTCGCAACGATGTTCGCCACCCGCGAGGATGTGGAC
GCCGCTCTTCGCGCCGAGCGCCCGCCCGACAAGATGGCAGACCTTCCTCA
CTGCCTCGCCAGCGACCTCCGCGTGCCGAAAACGTTCAAGAAGGCCATGC
GGTCTCAGCATTCAGAGTTGTGGGATGATGCAGTCGATCGAGAGCTTTTC
GGTTTATTGGACGCAGGAACTTTTAGTCCGGTGTAGCAACCAGTAGAGAA
CGCCATCAATGCTAAGTGGGTTTTTAACTGTAAGGCAGACGAGTACGGAT
GGCCGACGAAATTCAAGGCAAGACTTGTAGCGCGGGGGGACATGCAGAGG
GCTTCGATTGATTTTGGAGAATTGTTTGCACCCACCGTATCAGTGTCCAG
TGTGCTTGTTGGCAGCATTAGCATGCGAGCAGAATCTTAACTTGTGCCAT
ATCGATATTCAGCAGGCTTTTGTGCAGTCTGAGCTTGATGAGGATGTTTT
CATGCGCTTACCGCAGGGGTGTGGTAGGTTATCTGGCTTGATCGTGAAGC
TATGCAAGAGTCTGTATGGTTTGAAGCAGGCATCACGACATTGGCATTCG
CACCTGACGAGGTGTTTGTTACTTTTAGGTTTTTTGCAGTGTCTGGCA
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protein sequence of EsuBft1254_9a-0001

>EsuBft1254_9 ID=EsuBft1254_9|Name=EsuBft1254_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=461bp
MNDELDCLEGFVAGCSEQQTVAPPSLSHALAIIAPGACPFSVGKSTPTID
SCLFHASTGHANEFLMRETAKQQGVRLVGEMQPCVGCVEAKGRREPVPRR
GTLAAVPFGKVHIDLTGPFSDALDGSRYLIMFVDSASRWQRGYGMRPKSD
TLKFVQRFFADMNGMSTPGCFRKYNGGEFTGSAFTSFCDAAGIRREYTAP
DTPKQNAVVESAIPPYLRPMPHRRRPCHQERSSAPSPISDAPSSAPPSTA
TTPPRSPPGLPPPPPQPTSAATPAPPHPPLSKRAVKELGRKDTRVHGRTR
GDGVRFMEEQQQPPSGSGTALHQRLGLLAMMDKDSLISSLATREAVDQGR
RDLPPPPQPDPSLGGRGSGGAVGAGRPVDSGRGWRPQMFATMFATREDVD
AALRAERPPDKMADLPHCLASDLRVPKTFKKAMRSQHSELWDDAVDRELF
GLLDAGTFSPV
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mRNA from alignment at Scaffold_195:646407..648275+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1254_9a-0001 ID=EsuBft1254_9a-0001|Name=EsuBft1254_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1869bp|location=Sequence derived from alignment at Scaffold_195:646407..648275+ (Ectocarpus subulatus male Bft15b)
ATGAATGATGAATTGGATTGCCTGGAGGGTTTTGTTGCTGGATGCAGTGA
GCAGCAAACCGTAGCTCCCCCCTCCCTCTCGCATGCCTTGGCGATTATCG
CCCCCGGTGCTTGCCCGTTTTCGGTAGGAAAATCCACGCCGACCATTGAC
AGTTGTTTGTTCCATGCCTCCACCGGCCATGCAAACGAGTTTTTGATGCG
TGAAACGGCCAAGCAGCAGGGCGTACGACTGGTGGGGGAGATGCAGCCAT
GTGTGGGCTGCGTGGAGGCGAAGGGCAGGCGGGAACCGGTGCCGCGGCGT
GGTACCCTCGCGGCGGTACCGTTCGGCAAAGTCCACATCGACCTCACGGG
CCCGTTCTCTGACGCGCTGGACGGCTCCCGGTACCTGATCATGTTCGTGG
ACAGCGCGTCGCGGTGGCAACGGGGGTACGGGATGCGGCCAAAGAGCGAC
ACCCTGAAGTTTGTGCAGCGGTTCTTCGCCGACATGAACGGCATGAGCAC
TCCGGGGTGTTTCCGCAAGTACAACGGCGGCGAGTTCACCGGCTCCGCGT
TCACCTCGTTCTGCGACGCTGCTGGCATTCGGCGCGAGTACACCGCCCCC
GACACCCCCAAGCAAAACGCGGTGGTCGAGAGCGCCATTCCGCCGTACCT
GCGGCCGATGCCGCACCGCCGCCGCCCCTGCCATCAAGAACGTACACCTA
CATCCCGCCGTCACCAGCGACCACCGCACCGCCACAGCCCGCTTCCCCGC
CGATCTTCACAGGATCCTCAGCCCCGTCGCCGATCTCCGACGCCCCATCA
TCAGCCCCACCGTCGACCGCAACAACGCCGCCCCGTTCCCCCCCGGGCCT
GCCGCCGCCGCCGCCGCAGCCCACCAGCGCCGCCACCCCCGCTCCCCCGC
ACCCGCCGCTTTCGAAACGAGCCGTGAAGGAGTTGGGACGAAAGGACACG
AGGGTACACGGCCGCACGCGCGGCGATGGAGTGCGGTTCATGGAGGAACA
ACAACAACCGCCGTCCGGTAGCGGCACCGCTCTCCACCAACGTCTTGGTC
TGTTGGCGATGATGGACAAGGACTCCCTCATCTCGTCGCTCGCCACTCGA
GAGGCCGTGGATCAAGGACGCCGCGACCTGCCGCCCCCGCCGCAGCCGGA
TCCGAGTCTTGGAGGCCGTGGAAGCGGGGGGGCTGTGGGAGCTGGGAGGC
CCGTGGATTCTGGGAGGGGATGGAGACCGCAGATGTTCGCAACGATGTTC
GCCACCCGCGAGGATGTGGACGCCGCTCTTCGCGCCGAGCGCCCGCCCGA
CAAGATGGCAGACCTTCCTCACTGCCTCGCCAGCGACCTCCGCGTGCCGA
AAACGTTCAAGAAGGCCATGCGGTCTCAGCATTCAGAGTTGTGGGATGAT
GCAGTCGATCGAGAGCTTTTCGGTTTATTGGACGCAGGAACTTTTAGTCC
GGTGTAGCAACCAGTAGAGAACGCCATCAATGCTAAGTGGGTTTTTAACT
GTAAGGCAGACGAGTACGGATGGCCGACGAAATTCAAGGCAAGACTTGTA
GCGCGGGGGGACATGCAGAGGGCTTCGATTGATTTTGGAGAATTGTTTGC
ACCCACCGTATCAGTGTCCAGTGTGCTTGTTGGCAGCATTAGCATGCGAG
CAGAATCTTAACTTGTGCCATATCGATATTCAGCAGGCTTTTGTGCAGTC
TGAGCTTGATGAGGATGTTTTCATGCGCTTACCGCAGGGGTGTGGTAGGT
TATCTGGCTTGATCGTGAAGCTATGCAAGAGTCTGTATGGTTTGAAGCAG
GCATCACGACATTGGCATTCGCACCTGACGAGGTGTTTGTTACTTTTAGG
TTTTTTGCAGTGTCTGGCA
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Coding sequence (CDS) from alignment at Scaffold_195:646407..648275+

>EsuBft1254_9a-0001 ID=EsuBft1254_9a-0001|Name=EsuBft1254_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1386bp|location=Sequence derived from alignment at Scaffold_195:646407..648275+ (Ectocarpus subulatus male Bft15b)
ATGAATGATGAATTGGATTGCCTGGAGGGTTTTGTTGCTGGATGCAGTGA
GCAGCAAACCGTAGCTCCCCCCTCCCTCTCGCATGCCTTGGCGATTATCG
CCCCCGGTGCTTGCCCGTTTTCGGTAGGAAAATCCACGCCGACCATTGAC
AGTTGTTTGTTCCATGCCTCCACCGGCCATGCAAACGAGTTTTTGATGCG
TGAAACGGCCAAGCAGCAGGGCGTACGACTGGTGGGGGAGATGCAGCCAT
GTGTGGGCTGCGTGGAGGCGAAGGGCAGGCGGGAACCGGTGCCGCGGCGT
GGTACCCTCGCGGCGGTACCGTTCGGCAAAGTCCACATCGACCTCACGGG
CCCGTTCTCTGACGCGCTGGACGGCTCCCGGTACCTGATCATGTTCGTGG
ACAGCGCGTCGCGGTGGCAACGGGGGTACGGGATGCGGCCAAAGAGCGAC
ACCCTGAAGTTTGTGCAGCGGTTCTTCGCCGACATGAACGGCATGAGCAC
TCCGGGGTGTTTCCGCAAGTACAACGGCGGCGAGTTCACCGGCTCCGCGT
TCACCTCGTTCTGCGACGCTGCTGGCATTCGGCGCGAGTACACCGCCCCC
GACACCCCCAAGCAAAACGCGGTGGTCGAGAGCGCCATTCCGCCGTACCT
GCGGCCGATGCCGCACCGCCGCCGCCCCTGCCATCAAGAACGATCCTCAG
CCCCGTCGCCGATCTCCGACGCCCCATCATCAGCCCCACCGTCGACCGCA
ACAACGCCGCCCCGTTCCCCCCCGGGCCTGCCGCCGCCGCCGCCGCAGCC
CACCAGCGCCGCCACCCCCGCTCCCCCGCACCCGCCGCTTTCGAAACGAG
CCGTGAAGGAGTTGGGACGAAAGGACACGAGGGTACACGGCCGCACGCGC
GGCGATGGAGTGCGGTTCATGGAGGAACAACAACAACCGCCGTCCGGTAG
CGGCACCGCTCTCCACCAACGTCTTGGTCTGTTGGCGATGATGGACAAGG
ACTCCCTCATCTCGTCGCTCGCCACTCGAGAGGCCGTGGATCAAGGACGC
CGCGACCTGCCGCCCCCGCCGCAGCCGGATCCGAGTCTTGGAGGCCGTGG
AAGCGGGGGGGCTGTGGGAGCTGGGAGGCCCGTGGATTCTGGGAGGGGAT
GGAGACCGCAGATGTTCGCAACGATGTTCGCCACCCGCGAGGATGTGGAC
GCCGCTCTTCGCGCCGAGCGCCCGCCCGACAAGATGGCAGACCTTCCTCA
CTGCCTCGCCAGCGACCTCCGCGTGCCGAAAACGTTCAAGAAGGCCATGC
GGTCTCAGCATTCAGAGTTGTGGGATGATGCAGTCGATCGAGAGCTTTTC
GGTTTATTGGACGCAGGAACTTTTAGTCCGGTGTAG
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