EsuBft1254_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1254_10a-0001
Unique Name	EsuBft1254_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_195	contig	Scaffold_195:640968..643129 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1254_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	189
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1254_10a	EsuBft1254_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_195 640968..643129 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1254_10a-0001	EsuBft1254_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_195 642566..642814 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1254_10a-0001-exon	agat-exon-9739	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 640968..641687 -
EsuBft1254_10a-0001-exon	EsuBft1254_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 641956..643129 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1254_10a-0001-exon	agat-three_prime_utr-2404	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_195 640968..641687 -
EsuBft1254_10a-0001-exon	agat-three_prime_utr-2405	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_195 641956..642565 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1254_10a-0001-cds	EsuBft1254_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_195 642566..642814 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1254_10a-0001-exon	agat-five_prime_utr-1590	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_195 642815..643129 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_195:640968..643129-
coding sequence from alignment at Scaffold_195:640968..643129-

spliced messenger RNA

>EsuBft1254_10a-0001 ID=EsuBft1254_10a-0001|Name=EsuBft1254_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1894bp|location=Sequence derived from alignment at Scaffold_195:640968..643129- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CTAGGCCAGGATGTCATGGTGTACGTGGCTGATACAGCAGCCACGTGCTC
CATGTTCCGATGCGCAAACGCGCTCATGAACTACCGCGAGTGTAGTGGTT
GGGTCAAGGGGATCAGAGGCGACAAGGCCCCCGTTCCTCTCCTAGGGTAC
GGAGACGTGACCGTAGTCTTTCTGACCGAAGGCGGTAGGGTACCAGTGCT
AATCCTGAACGCCGCCCATGTGCCCGAGTCCCCCCACAACCTTCTCTCAC
TGTCGGCGAGTTGAGGAAGGCCACACGTATTCCGGCCAGAAGGGGGGGCT
GACTCTCACTACGAGAGCCGGGGGGAAGGTGTGGTTCCCCCGGACGGGTA
AGCTGCTAACTCAAGAAGGCTATCAAATCGAGCCGAAGGTAGACATCGCC
TGTGCCGCAACAATTGTTCCTGGCGATGCGAAAGCAGCCACCCCCACTGA
CCTCAACTACTACCACAATTCGCACGGCCACACGCACGAGGAACTACTCC
AGAAAACGGCGAAAGAGCAAGGAGTGCAGCTGACGGGAGGACCGCAGCTA
CCATGCCTCGGCTGTTCGATGTCCAAGGGGTAGGTGAAGCCCACTTCAAA
GAGCACGGACACACGCGTAGCTAAGAAATTGTTCCGCCTCTTCCTCGATT
TGGGGGGAAGGATGCACTTCAAAAGCATTGATGGAAACTCGTACACCCTC
ATCATCCGAGATGATTGCACCCGCTGGACACGTGTTTTCTTTCTGAAGCA
CAAGTCTGACGCCGCTGCCGCGTTCGAGCGATATCTGGCGGACTACAGAG
CAGAAACCGTCCCGTGTGAGGTGTTTGTCGCACGTACTGACGGCGGCGGA
GAATTCCAGGGCCAGTTTGCGGAGGTCTGCCGTAGATACGGCATCAAGCA
AGAATTCACGCCCCCCAACACCCCCAAGTACAACGGTGTAGCGGAACGAG
CGTTGGGGTTGCTTGCTGATTCTGCGCTTGCCTCCCGCATCCAAGCGAGA
GAGATGTTCCCCGACGCTTCAGTCAGCCCTGGCTTGTGGGCCGAGGTCAT
TTCTTATGCGTGCCACCAGATTAACTGCACCGCCACTACCGGCAACCCTG
GACACAAATCACCGTACGAGCTGTTGTACGGTACGTCGCCGCCGGTCGGG
TCTACAAACCCGTTCCTCAAACCTCTCGTGTTCAAATCGAGAAGAAAGGC
AAAGTCGCAACCCAAGGGCGCGAAAGGATGGTACCTTGGGCCTGCCCACA
ATCACCCCCGTGACTGCATCCGCTTGTTAACCGAAGCTGGTACCGTGGTC
ACGTCCCGAAATTTCACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

protein sequence of EsuBft1254_10a-0001

>EsuBft1254_10 ID=EsuBft1254_10|Name=EsuBft1254_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=82bp
MVYVADTAATCSMFRCANALMNYRECSGWVKGIRGDKAPVPLLGYGDVTV
VFLTEGGRVPVLILNAAHVPESPHNLLSLSAS

mRNA from alignment at Scaffold_195:640968..643129-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1254_10a-0001 ID=EsuBft1254_10a-0001|Name=EsuBft1254_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2162bp|location=Sequence derived from alignment at Scaffold_195:640968..643129- (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CTAGGCCAGGATGTCATGGTGTACGTGGCTGATACAGCAGCCACGTGCTC
CATGTTCCGATGCGCAAACGCGCTCATGAACTACCGCGAGTGTAGTGGTT
GGGTCAAGGGGATCAGAGGCGACAAGGCCCCCGTTCCTCTCCTAGGGTAC
GGAGACGTGACCGTAGTCTTTCTGACCGAAGGCGGTAGGGTACCAGTGCT
AATCCTGAACGCCGCCCATGTGCCCGAGTCCCCCCACAACCTTCTCTCAC
TGTCGGCGAGTTGAGGAAGGCCACACGTATTCCGGCCAGAAGGGGGGGCT
GACTCTCACTACGAGAGCCGGGGGGAAGGTGTGGTTCCCCCGGACGGGTA
AGCTGCTAACTCAAGAAGGCTATCAAATCGAGCCGAAGGTAGACATCGCC
TGTGCCGCAACAATTGTTCCTGGCGATGCGAAAGCAGCCACCCCCACTGA
CCTCAACTACTACCACAATTCGCACGGCCACACGCACGAGGAACTACTCC
AGAAAACGGCGAAAGAGCAAGGAGTGCAGCTGACGGGAGGACCGCAGCTA
CCATGCCTCGGCTGTTCGATGTCCAAGGGGTAGGTGAAGCCCACTTCAAA
GAGCACGGACACACGCGTAGCTAAGAAATTGTTCCGCCTCTTCCTCGATT
TGGGGGGAAGGATGCACTTCAAAAGCATTGATGGAAACTCGTACACCCTC
ATCATCCGAGATGATTGCACCCGCTGGACACGTGTTTTCTTTCTGAAGCA
CAAGTCTGACGCCGCTGCCGCGTTCGAGCGATATCTGGCGGACTACAGAG
CAGAAACCGTCCCGTGTGAGGTGTTTGTCGCACGTACTGACGGCGGCGGA
GAATTCCAGGGCCAGTTTGCGGAGGTCTGCCGTAGATACGGCATCAAGCA
AGAATTCACGCCCCCCAACACCCCCAAGTACAACGGTGTAGCGGAACGAG
CGTTGGGGTTGCTTGCTGATTCTGCGCTTGCCTCCCGCATCCAAGCGAGA
GAGATGTTCCCCGACGCTTCAGTCAGCCCTGGCTTGTGGGCCGAGGTCAT
TTCTTATNGACTATAGAGCAGAAACCGTCCCGTGTGAGGTGTTTGTCGCA
CGTACTGGCGGTGGCGGAGAATTCCAGGGCCAGTTTGCGGAGGTCTGCCG
TAGATACGGCATCAAGCAAGAATTCACGCCCCCCAACACCCCCAAGTACA
ACGGTGTAGCGGAACGAGCGTTGGGGTTGCTTGCTGATTCTGCGCTTGCC
TCCCGCATCCAAGCGAGAGAGATGTTCCCCGACGCTTCAGTCAGCCCTGG
CTTGTGGGCCGAGGTCATTTCTTATGCGTGCCACCAGATTAACTGCACCG
CCACTACCGGCAACCCTGGACACAAATCACCGTACGAGCTGTTGTACGGT
ACGTCGCCGCCGGTCGGGTCTACAAACCCGTTCCTCAAACCTCTCGTGTT
CAAATCGAGAAGAAAGGCAAAGTCGCAACCCAAGGGCGCGAAAGGATGGT
ACCTTGGGCCTGCCCACAATCACCCCCGTGACTGCATCCGCTTGTTAACC
GAAGCTGGTACCGTGGTCACGTCCCGAAATTTCACCTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_195:640968..643129-

>EsuBft1254_10a-0001 ID=EsuBft1254_10a-0001|Name=EsuBft1254_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=249bp|location=Sequence derived from alignment at Scaffold_195:640968..643129- (Ectocarpus subulatus male Bft15b)
ATGGTGTACGTGGCTGATACAGCAGCCACGTGCTCCATGTTCCGATGCGC
AAACGCGCTCATGAACTACCGCGAGTGTAGTGGTTGGGTCAAGGGGATCA
GAGGCGACAAGGCCCCCGTTCCTCTCCTAGGGTACGGAGACGTGACCGTA
GTCTTTCTGACCGAAGGCGGTAGGGTACCAGTGCTAATCCTGAACGCCGC
CCATGTGCCCGAGTCCCCCCACAACCTTCTCTCACTGTCGGCGAGTTGA