EsuBft2491_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2491_2a-0001
Unique Name	EsuBft2491_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_195	contig	Scaffold_195:627100..629015 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	42099.EPrPV00000023519
ProteomeId	EsuBft2491_2
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	121069\|Pythiales
Length	1916
Hectar predicted targeting category	other localisation
Evalue	3.13e-26
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,1MIKP@121069\|Pythiales
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0043170
GO	0003824
GO	0044238

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2491_2a	EsuBft2491_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_195 627100..629015 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2491_2a-0001-exon	EsuBft2491_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 627100..629015 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2491_2a-0001-cds	EsuBft2491_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_195 627100..627579 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2491_2a-0001-exon	agat-three_prime_utr-10057	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_195 627580..629015 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2491_2a-0001	EsuBft2491_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_195 627100..627579 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_195:627100..629015+
coding sequence from alignment at Scaffold_195:627100..629015+

spliced messenger RNA

>EsuBft2491_2a-0001 ID=EsuBft2491_2a-0001|Name=EsuBft2491_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1916bp|location=Sequence derived from alignment at Scaffold_195:627100..629015+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGTGTTCGCAGACGCAGACTATGCAAGGAAGGCTGCCGATAGGAG
GTCTGTGTCAGAAGGCTTGGTAATGTGGGGGGGGGGATGTATTTCTTGGT
TGTCAAGGACGCAGAAGTGCGTTACGTTGAGCACGACAGAGGCTGAGTAT
GTCTCCCTTGCGGATGTGATGAAGAAGGAAGTGTTGTTTCTGAGGAAGGT
ATGGCGTTTCATGTTGCCAGAAGCAGGTATGCCGTGTATTCCGGTGTTCG
AGGATAACCAGGGGGCTATTCAGTTGGCGCAGAACCCGATTAGCAACAGT
AACTCGAAGCACATCGACGTAAGGCACCACTTTATCAGGGAACTGGTAGG
CAGGAAGGGGATTTCGATTTTTCACGTGGAATCAGCGTATCAACATGCTG
GCTTCCTCACGAAGGCATTTCACGTCGGAAATTTTGAGTTTCATCGTAAT
TTCGCGATGAGTGTGGGACAGGAACGGTAGATTTGGATTTACTTGTGTTT
GATCAAAGAACTAGGGTGGCATTGTTTTACATTTTTCCCTATGGTCTTCT
CAATGAATGGTGCTCTAGGATGGGGGGCACTTGGGTCGCTATGATTCTCG
AAGAACTACAACTGGAATGATCGGGGATGGAAATATATTTCTAGCCCAGA
AGGCTATTGTTGCAGGTTTGAGTTTTGTTTTAGATTATTTTCTTGTGTTT
TGGAGTTACTGAATACATGAAGACATGGCATAGTCACAAGCAGGGGGGCT
GATAGATATACTTGTAGCAATGCCAAGTGGTTGGTGCTGGATGTTCCGAT
GGAATGAGGTAGAGCGGAATACCGGGTGACATGTGTGGTACGTAGAATGG
ATTCCAGGGATGTACAAGGTACCCCTGTTGTATACGGCGTCGCCCCTTCA
ACGGGGCTTGTGTGTGTGTATGGTCCGTGCACAACAATTTGTCCAATTCA
GTTTTGGGTGAAAAAAAAAAAGAATTGGAACGTGACACAACGTCGGTCGT
GACGGCCTCATCGAGTTATTACGTCGATATCCGAGGAGTGTTTGAATTTG
GTGAAAATGCAACATGTTCGGAAAAAATGATCCACGGTGCCCCCTTATGT
ACCCCCCGTACCCTCTCATGACATCACGGGCCCCCCTGAACACCACTACC
CACTACTGTATAAATGTTACAGAGACCACCTACACGCCAATAAATTTCTG
CAAACAAACATCTCTACTGCAGCTGCTGCTGACGGGTGTTTGCTGTGTCT
ACACCACCACACGGGAACAAGTACGAACTTCTCCGGAAAAAATACACATG
CAACACTCTGCGTTAAGGGTCAGAAAAATACTGGCCAGATACAGTCAACT
CCATGGAAGGGCCAGAAAAACAACGAAGAACAATAATCTGCTGCCGTCGC
GCACTATCCAGAAACATCCCCATAGTGTTGGCCAAGCCCACGACTTGGCG
CCCCAAAGCTGCTTTTCGGCGGCGGGATTGCTGGCTTCGTGAGCGAGAAA
ACACGGCGGGTTTTGTTTTTCTCGCCGCGTTTGCTGCCGAGCGAGCTGCG
GATACCACAGCACGCCCTGCGAACCTCAGTATCGACTGACCCCCACCACT
GCTGTGTGTCCTGCTGGGTTCCTCATCGCACCAGTCTTCGTCGTTTGCCG
CAGCCCCTTCCTCATCTTCATCCATAGAATTAGCGCTGCCGCCACAAGCG
TTGCTGTCGTCGGGTGCGTCCCCAACGGAAGGCACATCGGCGGCAGACGC
CGGAGAATCATGCTGCTGTGCCGGGGCATTCGAAACTATCCGCCCATGCG
ACCCACGGCCGAGCTTCCTCTTCTTCGCCCGTGGCATGGGCCTGTGTGTG
TCCGCGTGTGGGTGTTTGTGGCTGTGTGTGCACAGCGGCTGCTGCTGGCG
ATTTTTTCTCCCATGG

protein sequence of EsuBft2491_2a-0001

>EsuBft2491_2 ID=EsuBft2491_2|Name=EsuBft2491_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=159bp
MEVFADADYARKAADRRSVSEGLVMWGGGCISWLSRTQKCVTLSTTEAEY
VSLADVMKKEVLFLRKVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNS
NSKHIDVRHHFIRELVGRKGISIFHVESAYQHAGFLTKAFHVGNFEFHRN
FAMSVGQER

mRNA from alignment at Scaffold_195:627100..629015+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2491_2a-0001 ID=EsuBft2491_2a-0001|Name=EsuBft2491_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1916bp|location=Sequence derived from alignment at Scaffold_195:627100..629015+ (Ectocarpus subulatus male Bft15b)
ATGGAGGTGTTCGCAGACGCAGACTATGCAAGGAAGGCTGCCGATAGGAG
GTCTGTGTCAGAAGGCTTGGTAATGTGGGGGGGGGGATGTATTTCTTGGT
TGTCAAGGACGCAGAAGTGCGTTACGTTGAGCACGACAGAGGCTGAGTAT
GTCTCCCTTGCGGATGTGATGAAGAAGGAAGTGTTGTTTCTGAGGAAGGT
ATGGCGTTTCATGTTGCCAGAAGCAGGTATGCCGTGTATTCCGGTGTTCG
AGGATAACCAGGGGGCTATTCAGTTGGCGCAGAACCCGATTAGCAACAGT
AACTCGAAGCACATCGACGTAAGGCACCACTTTATCAGGGAACTGGTAGG
CAGGAAGGGGATTTCGATTTTTCACGTGGAATCAGCGTATCAACATGCTG
GCTTCCTCACGAAGGCATTTCACGTCGGAAATTTTGAGTTTCATCGTAAT
TTCGCGATGAGTGTGGGACAGGAACGGTAGATTTGGATTTACTTGTGTTT
GATCAAAGAACTAGGGTGGCATTGTTTTACATTTTTCCCTATGGTCTTCT
CAATGAATGGTGCTCTAGGATGGGGGGCACTTGGGTCGCTATGATTCTCG
AAGAACTACAACTGGAATGATCGGGGATGGAAATATATTTCTAGCCCAGA
AGGCTATTGTTGCAGGTTTGAGTTTTGTTTTAGATTATTTTCTTGTGTTT
TGGAGTTACTGAATACATGAAGACATGGCATAGTCACAAGCAGGGGGGCT
GATAGATATACTTGTAGCAATGCCAAGTGGTTGGTGCTGGATGTTCCGAT
GGAATGAGGTAGAGCGGAATACCGGGTGACATGTGTGGTACGTAGAATGG
ATTCCAGGGATGTACAAGGTACCCCTGTTGTATACGGCGTCGCCCCTTCA
ACGGGGCTTGTGTGTGTGTATGGTCCGTGCACAACAATTTGTCCAATTCA
GTTTTGGGTGAAAAAAAAAAAGAATTGGAACGTGACACAACGTCGGTCGT
GACGGCCTCATCGAGTTATTACGTCGATATCCGAGGAGTGTTTGAATTTG
GTGAAAATGCAACATGTTCGGAAAAAATGATCCACGGTGCCCCCTTATGT
ACCCCCCGTACCCTCTCATGACATCACGGGCCCCCCTGAACACCACTACC
CACTACTGTATAAATGTTACAGAGACCACCTACACGCCAATAAATTTCTG
CAAACAAACATCTCTACTGCAGCTGCTGCTGACGGGTGTTTGCTGTGTCT
ACACCACCACACGGGAACAAGTACGAACTTCTCCGGAAAAAATACACATG
CAACACTCTGCGTTAAGGGTCAGAAAAATACTGGCCAGATACAGTCAACT
CCATGGAAGGGCCAGAAAAACAACGAAGAACAATAATCTGCTGCCGTCGC
GCACTATCCAGAAACATCCCCATAGTGTTGGCCAAGCCCACGACTTGGCG
CCCCAAAGCTGCTTTTCGGCGGCGGGATTGCTGGCTTCGTGAGCGAGAAA
ACACGGCGGGTTTTGTTTTTCTCGCCGCGTTTGCTGCCGAGCGAGCTGCG
GATACCACAGCACGCCCTGCGAACCTCAGTATCGACTGACCCCCACCACT
GCTGTGTGTCCTGCTGGGTTCCTCATCGCACCAGTCTTCGTCGTTTGCCG
CAGCCCCTTCCTCATCTTCATCCATAGAATTAGCGCTGCCGCCACAAGCG
TTGCTGTCGTCGGGTGCGTCCCCAACGGAAGGCACATCGGCGGCAGACGC
CGGAGAATCATGCTGCTGTGCCGGGGCATTCGAAACTATCCGCCCATGCG
ACCCACGGCCGAGCTTCCTCTTCTTCGCCCGTGGCATGGGCCTGTGTGTG
TCCGCGTGTGGGTGTTTGTGGCTGTGTGTGCACAGCGGCTGCTGCTGGCG
ATTTTTTCTCCCATGG

Coding sequence (CDS) from alignment at Scaffold_195:627100..629015+

>EsuBft2491_2a-0001 ID=EsuBft2491_2a-0001|Name=EsuBft2491_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=480bp|location=Sequence derived from alignment at Scaffold_195:627100..629015+ (Ectocarpus subulatus male Bft15b)
ATGGAGGTGTTCGCAGACGCAGACTATGCAAGGAAGGCTGCCGATAGGAG
GTCTGTGTCAGAAGGCTTGGTAATGTGGGGGGGGGGATGTATTTCTTGGT
TGTCAAGGACGCAGAAGTGCGTTACGTTGAGCACGACAGAGGCTGAGTAT
GTCTCCCTTGCGGATGTGATGAAGAAGGAAGTGTTGTTTCTGAGGAAGGT
ATGGCGTTTCATGTTGCCAGAAGCAGGTATGCCGTGTATTCCGGTGTTCG
AGGATAACCAGGGGGCTATTCAGTTGGCGCAGAACCCGATTAGCAACAGT
AACTCGAAGCACATCGACGTAAGGCACCACTTTATCAGGGAACTGGTAGG
CAGGAAGGGGATTTCGATTTTTCACGTGGAATCAGCGTATCAACATGCTG
GCTTCCTCACGAAGGCATTTCACGTCGGAAATTTTGAGTTTCATCGTAAT
TTCGCGATGAGTGTGGGACAGGAACGGTAG