EsuBft4181_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4181_2a-0001
Unique NameEsuBft4181_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:33194..33872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog53485.EFQ92326
ProteomeIdEsuBft4181_2
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon2
Max annot lvl4751|Fungi
Length411
Hectar predicted targeting categoryother localisation
Evalue1.63e-12
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,2061J@147541|Dothideomycetes
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4181_2aEsuBft4181_2aEctocarpus subulatus male Bft15bgeneScaffold_195 33194..33872 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4181_2a-0001-exonEsuBft4181_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 33194..33598 +
EsuBft4181_2a-0001-exonagat-exon-84752Ectocarpus subulatus male Bft15bexonScaffold_195 33867..33872 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4181_2a-0001-exonagat-five_prime_utr-9785Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_195 33194..33391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4181_2a-0001-cdsEsuBft4181_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 33392..33598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4181_2a-0001EsuBft4181_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 33392..33872 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4181_2a-0001 ID=EsuBft4181_2a-0001|Name=EsuBft4181_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=411bp|location=Sequence derived from alignment at Scaffold_195:33194..33872+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTAACTCTAAAATTCAAACCGGATAATTCAGTAGACGCAAGCACACTAG
TGTACGTAGATGCTGACTTTGCCAGCAAGGCCAACGACCGTAGATCAGTT
TCGGGAGCAATAGTGCTTGTGGCTTCGATGCCTGTGGTTGGATTTCTGAA
ACGCAGAAATGCGTTTCACAGTCGACTTCTGAGGCAGAGTATCTTGCGAT
GGGTGACGGTGTAAAGGAGGCTCTGTTTGTGAATGGAATGCTTCAGTTCC
TGAGACCTAGTGCGAAGCCTCGGAAGATAGACGTCCTTGAGGACAACGAA
GGAGCGATTGCGCTCGCAGAGAATCCGCTTAGCTCGAGTAGGAGTAAGCA
CATTGATGTGAGGCATCACTTCCTTAGGAATTTGACAGAGGAGGGTGTTA
TCGAGGTGTAA
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protein sequence of EsuBft4181_2a-0001

>EsuBft4181_2 ID=EsuBft4181_2|Name=EsuBft4181_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=70bp
MGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSK
HIDVRHHFLRNLTEEGVIEV
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mRNA from alignment at Scaffold_195:33194..33872+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4181_2a-0001 ID=EsuBft4181_2a-0001|Name=EsuBft4181_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=679bp|location=Sequence derived from alignment at Scaffold_195:33194..33872+ (Ectocarpus subulatus male Bft15b)
TCTAACTCTAAAATTCAAACCGGATAATTCAGTAGACGCAAGCACACTAG
TGTACGTAGATGCTGACTTTGCCAGCAAGGCCAACGACCGTAGATCAGTT
TCGGGAGCAATAGTGCTTGTGGCTTCGATGCCTGTGGTTGGATTTCTGAA
ACGCAGAAATGCGTTTCACAGTCGACTTCTGAGGCAGAGTATCTTGCGAT
GGGTGACGGTGTAAAGGAGGCTCTGTTTGTGAATGGAATGCTTCAGTTCC
TGAGACCTAGTGCGAAGCCTCGGAAGATAGACGTCCTTGAGGACAACGAA
GGAGCGATTGCGCTCGCAGAGAATCCGCTTAGCTCGAGTAGGAGTAAGCA
CATTGATGTGAGGCATCACTTCCTTAGGAATTTGACAGAGGAGGGTGTTA
TCGAGGTCACGCANGAAGTAGAAGTCTTTTTTTTTTTTTTTGCTGTCATA
CATGCGAAGTAAATGTAGTTGGTCTGGTAGATACAAAACCCCCCTAGGGA
GGGTGTTCGTGGTAGCGGCCTTATGTATCGCCTGAGCTGCGGTAGAACAT
CTGATTGGATATTTTTAATTGCAGAACTGTCGATCGTAGGTTGTCATGCC
GAGTGTTCTGCGAATACTCTTTGTGGTAGTTCGGTAGATTGTACACACGT
AAGGATCGTACAACGGACCGTAGGTGTAA
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Coding sequence (CDS) from alignment at Scaffold_195:33194..33872+

>EsuBft4181_2a-0001 ID=EsuBft4181_2a-0001|Name=EsuBft4181_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=213bp|location=Sequence derived from alignment at Scaffold_195:33194..33872+ (Ectocarpus subulatus male Bft15b)
ATGGGTGACGGTGTAAAGGAGGCTCTGTTTGTGAATGGAATGCTTCAGTT
CCTGAGACCTAGTGCGAAGCCTCGGAAGATAGACGTCCTTGAGGACAACG
AAGGAGCGATTGCGCTCGCAGAGAATCCGCTTAGCTCGAGTAGGAGTAAG
CACATTGATGTGAGGCATCACTTCCTTAGGAATTTGACAGAGGAGGGTGT
TATCGAGGTGTAA
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