EsuBft2071_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2071_6a-0001
Unique NameEsuBft2071_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:18501..20001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2071_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length117
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2071_6aEsuBft2071_6aEctocarpus subulatus male Bft15bgeneScaffold_195 18501..20001 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2071_6a-0001-exonagat-exon-54188Ectocarpus subulatus male Bft15bexonScaffold_195 18501..19182 +
EsuBft2071_6a-0001-exonEsuBft2071_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 19514..20001 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2071_6a-0001-cdsEsuBft2071_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 18501..18656 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2071_6a-0001-exonagat-three_prime_utr-8038Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_195 18657..19182 +
EsuBft2071_6a-0001-exonagat-three_prime_utr-8039Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_195 19514..20001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2071_6a-0001EsuBft2071_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 18501..18656 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2071_6a-0001 ID=EsuBft2071_6a-0001|Name=EsuBft2071_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1170bp|location=Sequence derived from alignment at Scaffold_195:18501..20001+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGAGACCGAGGGGGTGCGCGAGCGGCAGGAGGGGAAGATCAGCGC
GACGCGATGCGTGAGCTGGTTGACCACTTCAAGCAGGCCTTCGCGACATC
AACTCATGACCAGGGGCACCGTGCCCACTCAGGCACGTCTAGCAACCAGA
TCTTAGAACTGAGGCAGAGAGAAAAGACTGATGTACCAGCATGAAGTGAT
GACTATCTGAAGAACAGATCGATCGAAGTTGCATTGCGAGTGTTCACGAG
TGCTTGTGAAGCGTGGCTGGAGAGTGAGGGACTTGCTGGTGTGATGAGGA
GTTCAGAGGTCCCTTTTGGTGCAGCTGGTGTGGATTTGAATTGGTTGAGC
AGCACGTTCGGAGAGGAGAGAGTGAAGCAATCCAGGAAGATTTGGACGTT
TATGCTAGCTAAGATCACAGCACAACCCGTACAAGCCCAAATCTTGGCAT
CAGAATCACCTCAAGCAGGGTACCGCGTGTTTCTCGAACAATACAGCCAG
GACAAGAGTCAGGAGCGACAAACTCTTGACGACGCATGGAACGTCATAGG
CCAGAGGCAAGGAGAGAGTCTTATGGACTTCTACGGTAGGGCAGTTGCGC
TGTGGATGAGACTTCGATCGAATGGTGATAACAGGGATGAAAAGTCGATG
TGCAGGCACATAGTCCGGGGATTTCTCCCAAGGTTTGAGAAAACTAAAGA
CCGTCTTCTGTTTGATTCGATGTTGTCGAGGGCTACAATGCAGGAGATGC
TGAGGTTGGGAGAGCACGAGCTGAGGTACGAGCGGAGAGCCGGAGAGGGG
AAGGAAGAGATGAGGCACGCCCTCGTCGCTGCCGGCGTGGGCCGGGGTGG
CGAGGCGAGGAAACCAGCCGCTGCAGGATCGGAGCAAGGCGGAGATCGAC
TCCAGCAACCACAAAGGTCGGTGCAGTCACATCAGCAGCAACCATCGCAC
TTCTGCAAGCTGCACCGCCCCAACAGCACCCACGAGACCTCCGAATGTCA
CAAGTTACGCAACGAATTCCTCGCTCACTAGAACGAGTTCTGCGCGTACA
CGAGCGGGAGGCGGGAGGCCCAGGCATCGGTCTTCCCTCGAGGCGGAGCC
CAAGACTCGGGGCGGATGGTTGGTGGCCCATATCGACAGCAGCCGTACCA
AAACGAGCAAGGTGCGGGCT
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protein sequence of EsuBft2071_6a-0001

>EsuBft2071_6 ID=EsuBft2071_6|Name=EsuBft2071_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=51bp
MHETEGVRERQEGKISATRCVSWLTTSSRPSRHQLMTRGTVPTQARLATR
S
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mRNA from alignment at Scaffold_195:18501..20001+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2071_6a-0001 ID=EsuBft2071_6a-0001|Name=EsuBft2071_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1501bp|location=Sequence derived from alignment at Scaffold_195:18501..20001+ (Ectocarpus subulatus male Bft15b)
ATGCACGAGACCGAGGGGGTGCGCGAGCGGCAGGAGGGGAAGATCAGCGC
GACGCGATGCGTGAGCTGGTTGACCACTTCAAGCAGGCCTTCGCGACATC
AACTCATGACCAGGGGCACCGTGCCCACTCAGGCACGTCTAGCAACCAGA
TCTTAGAACTGAGGCAGAGAGAAAAGACTGATGTACCAGCATGAAGTGAT
GACTATCTGAAGAACAGATCGATCGAAGTTGCATTGCGAGTGTTCACGAG
TGCTTGTGAAGCGTGGCTGGAGAGTGAGGGACTTGCTGGTGTGATGAGGA
GTTCAGAGGTCCCTTTTGGTGCAGCTGGTGTGGATTTGAATTGGTTGAGC
AGCACGTTCGGAGAGGAGAGAGTGAAGCAATCCAGGAAGATTTGGACGTT
TATGCTAGCTAAGATCACAGCACAACCCGTACAAGCCCAAATCTTGGCAT
CAGAATCACCTCAAGCAGGGTACCGCGTGTTTCTCGAACAATACAGCCAG
GACAAGAGTCAGGAGCGACAAACTCTTGACGACGCATGGAACGTCATAGG
CCAGAGGCAAGGAGAGAGTCTTATGGACTTCTACGGTAGGGCAGTTGCGC
TGTGGATGAGACTTCGATCGAATGGTGATAACAGGGATGAAAAGTCGATG
TGCAGGCACATAGTCCGGGGATTTCTCCCAAGGTTTGAGAAAACTAAAGA
CCGTCTTCTGTTTGATTCGATGTGGAAGAGCACGAGCTGAGGTACGAGCG
GAGAGCTGGAGAGGGGAAGGAAGCGATGAGGCACGCCCTCGTCGCTGCCG
GCGTGGGCCGGGGTGGCGAGGCGAGGAAACCAGCCGCTGCAGGATCGGAG
CAAGGCGGAGATCGACTCCAGCAANCATAGGCCAGAGGCAAGGAGAGAGT
CTTATGGACTTCTACGGTAGGGCAGTTGCGCTGTGGATGAGACTTCGATC
GAATGGTGATAACAGGGATGAAAAGTCGATGTGCAGGCACATAGTCCGGG
GATTTCTCCCAAGGTTTGAGAAAACTAAAGACCGTCTTCTGTTTGATTCG
ATGTTGTCGAGGGCTACAATGCAGGAGATGCTGAGGTTGGGAGAGCACGA
GCTGAGGTACGAGCGGAGAGCCGGAGAGGGGAAGGAAGAGATGAGGCACG
CCCTCGTCGCTGCCGGCGTGGGCCGGGGTGGCGAGGCGAGGAAACCAGCC
GCTGCAGGATCGGAGCAAGGCGGAGATCGACTCCAGCAACCACAAAGGTC
GGTGCAGTCACATCAGCAGCAACCATCGCACTTCTGCAAGCTGCACCGCC
CCAACAGCACCCACGAGACCTCCGAATGTCACAAGTTACGCAACGAATTC
CTCGCTCACTAGAACGAGTTCTGCGCGTACACGAGCGGGAGGCGGGAGGC
CCAGGCATCGGTCTTCCCTCGAGGCGGAGCCCAAGACTCGGGGCGGATGG
TTGGTGGCCCATATCGACAGCAGCCGTACCAAAACGAGCAAGGTGCGGGC
T
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Coding sequence (CDS) from alignment at Scaffold_195:18501..20001+

>EsuBft2071_6a-0001 ID=EsuBft2071_6a-0001|Name=EsuBft2071_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=156bp|location=Sequence derived from alignment at Scaffold_195:18501..20001+ (Ectocarpus subulatus male Bft15b)
ATGCACGAGACCGAGGGGGTGCGCGAGCGGCAGGAGGGGAAGATCAGCGC
GACGCGATGCGTGAGCTGGTTGACCACTTCAAGCAGGCCTTCGCGACATC
AACTCATGACCAGGGGCACCGTGCCCACTCAGGCACGTCTAGCAACCAGA
TCTTAG
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