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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 221103.XP_007846268.1 |
| ProteomeId | EsuBft468_9 |
| Protein domains | PTHR12100 |
| Protein domains | IPR009976 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | exocyst complex component 5 os:oryza sativa japonica gn:sec10 pe:2 sv:1 [Automatic annotation] |
| Nb exon | 10 |
| Max annot lvl | 4751|Fungi |
| Length | 1498 |
| Hectar predicted targeting category | other localisation |
| Evalue | 4.66e-13 |
| EggNOG OGs | KOG3745@1|root,KOG3745@2759|Eukaryota,38C8R@33154|Opisthokonta,3NUB1@4751|Fungi,3UZGU@5204|Basidiomycota,227PA@155619|Agaricomycetes,3W6QP@5338|Agaricales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | SEC10 |
| KEGG ko | ko:K19984 |
| GOs | GO:0000145,GO:0000920,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005933,GO:0005935,GO:0005937,GO:0005938,GO:0006810,GO:0006886,GO:0006887,GO:0006892,GO:0006893,GO:0006903,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0016192,GO:0030427,GO:0032153,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0042995,GO:0043332,GO:0044424,GO:0044444,GO:0044448,GO:0044463,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051285,GO:0051286,GO:0051301,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090522,GO:0098876,GO:0099022,GO:0099023,GO:0099568,GO:0099738,GO:0120025,GO:0120038,GO:0140029 |
| Description | Exocyst complex component Sec10 |
| COG category | U |
| BRITE | ko00000,ko04131 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0006887 |
| GO | 0005737 |
| GO | 0048278 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft468_9a-0001 ID=EsuBft468_9a-0001|Name=EsuBft468_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1498bp|location=Sequence derived from alignment at Scaffold_189:393652..398777- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCGGCGGCTTTGGCGGCTGCCTTGTCCGTGGTCGTCGCTNCGAGGAGCCG
CTGAAGGTGCAGATGTGGGAGCGCCATTCCTCCGCTGGGAGGGGTAGGTC
ACATTGCCGTCAAGCTGGATAGACATTCGCCGTGAGGAGATTCAGTGTTT
TCGTTTCGAAGGACACCACTTCGACGCCAACCAACCCCTGGCCGAGACAC
TAAGGACTTGCTTGAGGAAGCTCAGGCTGGCGGCGAAACCAACCAAGGGG
GCTCCGCAGTATGATGTTAAGGCTGCATGGGGACACGACGCTCGCGCGTG
CCGCCCTGTGTCTGCTGCTGCTGGCTCGGGCTGCTGCATGGCTGGGTCTT
GTCGTCGCGTTTGTTGATACCACTACAGCCGTTGGGTGTGCACAGCAGGG
CCTTTGAAGGACATCATGTCGGGCATCCGTGGATCGCAGACCCGCGGTAA
GTTGCCTCCGTTGTCTCGACAGGGCGATGCAGCCCACTCGAGGTCACCGT
TCGGGACTAGCAGCAGCAGCAGCGGCAGCAGCAGTATCAGAAGGTCATCC
GGAGGTGGCAGAGGGACAGCAGCTGGTCGAGGGAAGCCTTCAACAAGCCG
CTTGCAGGAAATTAGTATCCCGGAAGGAATGGATGAAGAGCAGGTAGGTG
CTGCGGACGACAGCGACGGTCTGGACCGGAGGGCTAAGCAGCTCGTGCTC
GACAGTGCCTTCGCCTCCATGATCAACGATAGCGACCCCGATAAGTTTGA
CCGCGCCAAGCTGGTGGAAATCTTGACCGCTCCGTACATCGAGGACTCCG
GCGACGGTATTGTAGCTTTGGACCCTCACGCCCTCAAGAAGCTCTTCACC
ACCACCAGTAACCTGTTGCAGGAGATGGGGGTTGAGGGAGAGAGGAAGAG
GCTGGCGATGGCGGGGGAGACAGGGGCGATCGAGGAGGACTACCGACAGG
GATTGACATCCCACGCCACCAGGCTGAACAAGGTACAAGATTCTTTGGAA
GGGGTGGAGCACAGGTTTCGCGAGACGGCCCACAAGGCCGTTCGCATCGG
CGACCGGCTGTCGAAGATGGAGGGGCAGCGGGCGAGGGCGGCGGAGGCTA
TGGATCTCCTAGAGTTCTTCAAGGTTTTCGAAGGCCTTCCGGAGGGATTT
TCCGAGGATCAGGACACCGTGGTGCGGTACATGAAGCTCTTGCCCCCCGT
GTTCTGCGACGAAGACAGAAGACCAGAAGCCGCGACGGTGTTGGCGAAGC
TAAAGAGCATCACGCACGAGCTGGAGTCCAAGGAGCTCGACAAGGCGGCG
AAAAACTTGCAGGCCTACAGCGACTTCTTGGAGCAAGAGCTGCTGGACCT
GTTCGAGCGCGCCGCGGGAAGGTCTCCGCCTGAGGTGGCCTTGATGAGGG
AGTGCTCCGACATACTGTTCGCGCTCAACGAGGGGGATCATCTGCAGAGC
CGCTTCGTCTTCTTCGTCGTCACGCAGGCTGCGTGCAAGCAATGGTAG back to topprotein sequence of EsuBft468_9a-0001 >EsuBft468_9 ID=EsuBft468_9|Name=EsuBft468_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=360bp
MSGIRGSQTRGKLPPLSRQGDAAHSRSPFGTSSSSSGSSSIRRSSGGGRG
TAAGRGKPSTSRLQEISIPEGMDEEQVGAADDSDGLDRRAKQLVLDSAFA
SMINDSDPDKFDRAKLVEILTAPYIEDSGDGIVALDPHALKKLFTTTSNL
LQEMGVEGERKRLAMAGETGAIEEDYRQGLTSHATRLNKVQDSLEGVEHR
FRETAHKAVRIGDRLSKMEGQRARAAEAMDLLEFFKVFEGLPEGFSEDQD
TVVRYMKLLPPVFCDEDRRPEAATVLAKLKSITHELESKELDKAAKNLQA
YSDFLEQELLDLFERAAGRSPPEVALMRECSDILFALNEGDHLQSRFVFF
VVTQAACKQW back to topmRNA from alignment at Scaffold_189:393652..398777- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft468_9a-0001 ID=EsuBft468_9a-0001|Name=EsuBft468_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5126bp|location=Sequence derived from alignment at Scaffold_189:393652..398777- (Ectocarpus subulatus male Bft15b)
GCGGCGGCTTTGGCGGCTGCCTTGTCCGTGGTCGTCGCTNCGAGGTCATA
GGGCAACTACTGCTGTACCACAAGGGGGCACACACTACATCTCATTCATT
ACTTTTTGGGAAACAAGGAGAACAAGGGAGAGAAGAGCGCAGCCCGTACC
ACGCGAGTGAGGAGCCGCTGAAGGTGCAGATGTGGGAGCGCCATTCCTCC
GCTGGGAGGGGTAGGTCACATTGCCGTCAAGCTGGATAGACATTCGCCGT
GAGGAGATTCAGTGTTTTCGTTTCGAAGGACACCACTTCGACGCCAACCA
ACCCCTGGCCGAGACACTAAGGACTTGCTTGAGGAAGCTCAGGCTGGCGG
CGAAACCAACCAAGGGGGCTCCGCAGTATGATGTTAAGGCTGCATGGGGA
CACGACGCTCGCGCGTGCCGCCCTGTGTCTGCTGCTGCTGGCTCGGGCTG
CTGCATGGCTGGGTCTTGTCGTCGCGTTTGTTGATACCACTACAGCCGTT
GGGTGTGCACAGCAGGGCCTTTGAAGGACATCATGTCGGGCATCCGTGGA
TCGCAGACCCGCGGTAAGTTGCCTCCGTTGTCTCGACAGGGCGATGCAGC
CCACTCGAGGTCACCGTTCGGGACTAGCAGCAGCAGCAGCGGCAGCAGCA
GTATCAGAAGGTCATCCGGAGGTGGCAGAGGGACAGCAGCTGGTCGAGGG
AAGCCTTCAACAAGCCGCTTGCAGGAAATTAGTATCCCGGAAGGAATGGA
TGAAGAGCAGGTGAGCGGGCGTGGCGCCAACTTTCTATGCAAGTGCAGAC
ATACGTTGCCTAGTCGAACAAAGGCTGCGGGTCATGCATGCAGAGAGACG
GCAAAGCAGGTCTCGGAACAATCGGATGTTCTTCGTTCGAGAAGTTGAGC
TGCCAGCAGTGCTGACGTCTTCTGTGACCGTGCAACTGCGCCCAAAAGAT
TAACCCTGGTGACATTTTGGATGCACACGCACGCTCTATTGTTGGAATCC
TTTTGGTGTTGTAATGGTGCCCAGTAGTTACGACGATACTCTCGCAGTGT
TGGAGACCACGAAGACGCTGGTTCCCATACACCACAGCGTTTGTCCGCAC
TTTCGCCGTCCCTGCACAGGGTAGGTAGGTGCTGCGGTACGTGTTCATGC
GGCAGCCCCCAATGCGCACCCTCGAAGATGCTTACCACAACCTAAAACAC
GATACAAGTCACCAACAATTCCGAGCACAGCCTGCGGTCCTTCGTTAGGC
TATCGTAGATTGTTGCGACACCGGTAGGTGCGGGAAAACGAGGACAGCCG
CGTTGCCCTACCTAAGAACTCAGCCTAGCCGATCCAGTTTTGGTATTTTA
GGCTCTTTCGTCCGGTCGCAGATACTGAGCTACAGATGTACTGCTGTGTG
ACAAGTGCAAGTAGCCTGAACGATAACTGCCTCGTGCTTCACACGCATGT
GCGAATGCATATGCCAGAGGGTATTAGCGTCTCGCCCCCCCCTGCCCCCC
CCGTCCTCTCTCTGTCTCTGTCTCTCTTCTTGTTAACCTTTCGTCGTAGG
TTTGCTTGGTGACAGGAAGCATCCATCCCGCCGTTCTCGCGTTGCTGTTG
TGCTGCTCTCTCGCCTCGTCTCGTGTCGTGTGGCCCTGGCAGGACGACAG
CGACGGTCTGGACCGGAGGGCTAAGCAGCTCGTGCTCGACAGTGCCTTCG
CCTCCATGATCAACGTGTGTATACATGCATAGGAACACACAGCAACCTGC
TGCTGTCGAAAGCCACTTTGATAGCAAGGAAACACAACGATGCGTGGTAG
GAAGACGTTTAGTACTCCGTCCGAGCGGCCGAAGATGTAAGTAATCCTGC
TGCTGCTGCTGCTGCTGCTGGGTGCCCTTTGCGTGTGGAGAAAACGAAGG
ACACAGAGAGCAATGGCGGGGGCGACATATCGGTTGCCTGCCAGACTTTC
ACCTTACTCCCCCCTTCGTGCGCAAATCTTGATGCATGGGTGTGTCACGT
CATTTTTTCTGTTGTTCTGTTCGTCGTCGGCTTCGTCATTTCGTTGTCAA
CTGTTGTTGTATGCTGCTGTTGCTGCTTTCGCCGTTACTGTGTGTTGTGC
CGCGCTTTCATCGCCGGAACCAACCAACCTGTTCACAGGATAGCGACCCC
GATAAGTTTGACCGCGCCAAGCTGGTGGAAATCTTGACCGCTCCGTACAT
CGAGGACTCCGGCGACGGTATTGTAGCTTTGGACCCTCACGCCCTCAAGA
AGCTCTTCACCACCACCAGTAACCTGTTGCAGGTGACACCCCTCTTCGCT
TTCGTGCAGTCTTTGCTCCTCTCGGTTGATGTGAGCTCGTTTGGCCCGTC
CGCATGTTTCATGAAAGCCTTTCCACCAACCATGTTTCGTCCTTTTGTGA
GTTTTAGGAGATGGGGGTTGAGGGAGAGAGGAAGAGGCTGGCGATGGCGG
GGGAGACAGGGGCGATCGAGGAGGACTACCGACAGGGATTGACATCCCAC
GCCACCAGGCTGAACAAGGTTCGTTGTGTGTCCTGGGTGTGGATTTATTT
GATATTTCCATTTGGTTGGATGTGTTTACTGTGGCCCCTTCCTGCCCGCG
AGAGATTCCTGTACCCCTTGAGGATATGACACCCCATCCTGCAACTTCTA
GGAGAAATGGCCCCAAAGAGAATACGTCTCTTTCTGGTATGATGGGATAA
TTCATTGTTATAAGTATGTTTTCCTCCTTGGGAACGAAAGTGATGCTTTC
ACACCCAACTGAAGCTCCCTCCCGCTCCAGTGAGACGCAAATCGATCCGG
ATGTGTGCAATTGCAGAGGGGTTCGTATAAAGCATGACCGCTCCTGTCGT
CTATACTGGCCCAGCCACCCACGGCATGCTTGATAGTCACAAGACTATTT
GTTGCGGTCACCATGATTTCCTGCCACCGTGCTGCAATCACACATAGCTA
TTTCGCAGTCGGTGCCATGACCGCAGTCATGACAATACCGTTACCAGAAA
GCATCGAAGCATCATCGTCTGTGTCTGTACCACATAATTGCATCGATTTC
CAAATCTCGGTCTCCAACGTGCAGGTACAAGATTCTTTGGAAGGGGTGGA
GCACAGGTTTCGCGAGACGGCCCACAAGGCCGTTCGCATCGGCGACCGGC
TGTCGAAGATGGAGGGGCAGCGGGCGAGGGCGGCGGAGGCTATGGATCTC
CTAGAGTTCTTCAAGGTGCGGTTTGCCGAAATAATTGTTTTGCTGCGGCT
GCTCAAGCGCACATATTCCCGGGGACGTGAACACAGATACAGATTTAGAG
AACGAGATGACGAAAGAGACAGAGATAGAGATAGAGAGCGACAAGGACAG
AGATAATGACAGAGACTAGAGCATGACCTCGAGCGAGAAAAGGGGAAAGA
AGTGAACGTTCAGAGGTGTACAGTTTTCACTGTACTCTGCGGGGTAGGAT
GTGCCTGTCAATCGGTTGGATAGCTTTCCTGTGAATGTAGAGTTGTCCGC
TCGGTTTTGCCATACGCCTGTTTGCCGATGGTCATGGAGTATGTAGAGGC
AACGGGTAGAGATCGGAGAAAGAAATGACAATAACTTGGCGTCAAGACTG
CAGCAACACCAACAGCAACAGAGAGTCAAGAGGAGAAGCACTCCGGCATT
GCAGGTTTTCGAAGGCCTTCCGGAGGGATTTTCCGAGGATCAGGACACCG
TGGTGCGGTACATGAAGCTCTTGCCCCCCGTGTTCTGCGACGAAGACAGA
AGACCAGAAGCCGCGACGGTAAGAAATGGTTTGCTTTTTCCCGCCGCTTC
TGGAGGGCTTGGCGAGAAACAATGAAATACTCATCTTGTTTCTAGACTGC
ATGTGTGTGTCGCTGCCAGTGGACCATTCCTCGCGTCTCTTCGAAGCCAG
GGCTTAGCGCGTAGGGGTTTTGGAGCGCCCGGGCGGCGGCGGCGGTCGGC
GGGGTAGAGGATGGGGATATGGGAGGCAAAAGCAGGGACAACGTGGATGT
GTTTGTTAGTCGGTTTGTGGGGAAGATTTTTTCGCACGTGAAAGCACTCA
CGAGCGTACGAAAAAATTCGTGCCTCTCCGAAAGCGTCTTGGACGAAGGT
CGACGTCCTAGAGATGAGTACGCTACCTGTGGTATTTTTGAGGGATGTGG
CTGGTTTGTGCGAGAGATTGAGGCCTACGGTGGTGGGATGTAAGGTATTG
TGTATCAATATTTTTTGTGAAGTGTATTATATTTTGGACAACCCCGTCTC
TCCCGGCCGTGGGCTGTTTCATGGCCGGACCGAAGAGTAGTTCATATAGT
AGTCACAAATTTCTAGTTTCCTCTGGCAGAACCACGACCACATGAGGCTG
TCGCTTCCGTGGGGAGTGGGATATGAAACATTTCGATGGGGTAGTAGTCT
GTATATTTCGGTGCTCTATTCTCCGCCAGGCCAAAAATGGGGCTGTAATA
TTATTATCGATTATTATCGAACACGCATGAAACATCTTCGTCTCTGCTAC
GCGTCTCTATTGTGGGGCTCACGATGATGATCTGGACGTGCGTTCTCTTG
GTTTCTGTCATTTGTCCGTGGTTGTCGGTCGTTCGGGTGTCCTTGTTTCC
CGGATGCAGGTGTTGGCGAAGCTAAAGAGCATCACGCACGAGCTGGAGTC
CAAGGAGCTCGACAAGGCGGCGAAAAACTTGCAGGTCTGTGTCGCTGCCG
TCGTTGTTGTGTTACTGTTGCTATTTAACATCTCGATGCTTGTTTCGGCG
GTACTCTTGCACTGCCGGTGTGGCGGCCGCTGCTGGGCCTTGCCGCGAAC
CGTAACCTGCTGTTGCGTTGCTGTGGAAGAGTAATGGTGACGCCAGCTCG
TACACCCCCTTCCCAACAACACCACAGGCCTACAGCGACTTCTTGGAGCA
AGAGCTGCTGGACCTGTTCGAGCGCGCCGCGGGAAGGTCTCCGCCTGAGG
TGGCCTTGATGAGGGAGTGCTCCGACATACTGTTCGCGCTCAACGAGGGG
GATCATCTGCAGAGCCGCTTCGTCTTCTTCGTCGTCACGCAGGTACCTAC
TCTCCTACTATATGTGTGTTTGATGTATATATGTCGATATGCACCATATG
CAGAGGCTGCGTGCAAGCAATGGTAG back to topCoding sequence (CDS) from alignment at Scaffold_189:393652..398777- >EsuBft468_9a-0001 ID=EsuBft468_9a-0001|Name=EsuBft468_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1083bp|location=Sequence derived from alignment at Scaffold_189:393652..398777- (Ectocarpus subulatus male Bft15b)
ATGTCGGGCATCCGTGGATCGCAGACCCGCGGTAAGTTGCCTCCGTTGTC
TCGACAGGGCGATGCAGCCCACTCGAGGTCACCGTTCGGGACTAGCAGCA
GCAGCAGCGGCAGCAGCAGTATCAGAAGGTCATCCGGAGGTGGCAGAGGG
ACAGCAGCTGGTCGAGGGAAGCCTTCAACAAGCCGCTTGCAGGAAATTAG
TATCCCGGAAGGAATGGATGAAGAGCAGGTAGGTGCTGCGGACGACAGCG
ACGGTCTGGACCGGAGGGCTAAGCAGCTCGTGCTCGACAGTGCCTTCGCC
TCCATGATCAACGATAGCGACCCCGATAAGTTTGACCGCGCCAAGCTGGT
GGAAATCTTGACCGCTCCGTACATCGAGGACTCCGGCGACGGTATTGTAG
CTTTGGACCCTCACGCCCTCAAGAAGCTCTTCACCACCACCAGTAACCTG
TTGCAGGAGATGGGGGTTGAGGGAGAGAGGAAGAGGCTGGCGATGGCGGG
GGAGACAGGGGCGATCGAGGAGGACTACCGACAGGGATTGACATCCCACG
CCACCAGGCTGAACAAGGTACAAGATTCTTTGGAAGGGGTGGAGCACAGG
TTTCGCGAGACGGCCCACAAGGCCGTTCGCATCGGCGACCGGCTGTCGAA
GATGGAGGGGCAGCGGGCGAGGGCGGCGGAGGCTATGGATCTCCTAGAGT
TCTTCAAGGTTTTCGAAGGCCTTCCGGAGGGATTTTCCGAGGATCAGGAC
ACCGTGGTGCGGTACATGAAGCTCTTGCCCCCCGTGTTCTGCGACGAAGA
CAGAAGACCAGAAGCCGCGACGGTGTTGGCGAAGCTAAAGAGCATCACGC
ACGAGCTGGAGTCCAAGGAGCTCGACAAGGCGGCGAAAAACTTGCAGGCC
TACAGCGACTTCTTGGAGCAAGAGCTGCTGGACCTGTTCGAGCGCGCCGC
GGGAAGGTCTCCGCCTGAGGTGGCCTTGATGAGGGAGTGCTCCGACATAC
TGTTCGCGCTCAACGAGGGGGATCATCTGCAGAGCCGCTTCGTCTTCTTC
GTCGTCACGCAGGCTGCGTGCAAGCAATGGTAG back to top
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