Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft468_5 |
| Protein domains | Coil |
| Protein domains | PF14223 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 549 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft468_5a-0001 ID=EsuBft468_5a-0001|Name=EsuBft468_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5490bp|location=Sequence derived from alignment at Scaffold_189:359812..365583+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGGGCATCGACCTCTCCGCCCTTAGCGAGGAAGAGGTACAGCAAGA
AGTGGAGGAGATCGTCCAGCAACGAGTGCAAGCCGAACTCGAAGCCAACA
GGATAAACGAGGGTGAAGTCACCTACGCCCCACCACCTGCCGGCAACCCG
GTCCCACCTACCGGCAGCCAGCCATCACCCTCCAGCCAGGGTAAAACACC
TTCCTTCAACGACCCCAGCAGCGTCGCACACATCGTGGCGCAAGCGGCCA
AGGCGACAGCTGAGGCCATCGCTGAACAACAGGGCTTTGCCCGCTCAGGC
ACGTTACGTGTAAATCCAGGCTCAGAAATCGAACCTTGGCTTGGTAGTGT
GAAGAAGGAGCAGGATCTGTACATTATGTTTGATATTTTTCGTGTGACAG
AGTTCTACCAGGAGAAAAAGCAGTCAGAAAAGTCGAGGTTGGAGCAGGAC
TGGAAGCAGTTGGAGATGAAAGAGTCCGAGAGTCCACAGGATTACATTGC
CCGCTCAGAGGCCCTTCGCCTGCGTCTCGCATCTGTAGGCACGATTAAGG
ATGAAACAGATGCCAACAAAGACATTGCTCGTGGCCTTCCCTCTTCGTTG
TATGCCGTGCAAAAAGGAATACTGCTTGCCCATGATGTCCTGACGTTGCG
TACCCTTGAGACTGTGGTGAGGGACGCCCACGTGGAGATGGAGCGCGAGA
GGAGCAAGGGGGAGAGGCGCGAGGTGGAGCTCGCTCTCGCCGCGTCCGGC
ATGGGCCGGCGCGGCGGGGGCAGTGGGGGGGCATCCGGGGGTCAAGACGG
GGGTCACGCAGCAGCTGGCGGCCAAAATCGTGACGGAGAGAAGAAAAATA
GTGACATGTTCAACGACGAACCCGGCGGATTTTGCCGCTACCACCAGTCC
GAGCTTCACACCAACGAGCAGTGTCGTCTCCAGCAGCAACTGCGGCGCGC
GCGTTCGATAGAGGGCGCCAAGGAACGCCGCTCGGGCGGTGGCAGCCGCG
GTGGCGGCGGTAGCCAGCGAGGAGGTAGACCGCCGCCGGGGCCCGGCCGC
GGTGGCGGGCGATGGGTGAGGATAGAAGGGCAGCAGCACCACACCGGTCA
TGGTGGCGGTGGCTGGAGCCAAGCCTCACCCCCCCCGAGGCCTCTTCGTG
GACGTGGGCCTGGTGGTCGTCTGGGGCGTCACCCGGGGGGTCGTGGGCCC
GCGGGACGCNNNNNNNNNNNNNNNNNNATAGTTCTGTTCTCGGCAGCGCC
TGGCGAGGGGTCCGTCCCCGGAGATCTCTACTCACAGCCCGGGATTCTAC
GAGCCGAGAGTGTATCTTTTGATAGTATTTGGTAAACCATTTGTCTAGTC
ATCGATGACTGTGCACGTAGTCAAATGGTCAGCCTTTAGCGAATAAGGAG
ATGAAAGTGGTCGCGAGTCTGAGTTTCAACTTGTTTTCGACACATGCTGT
TTCCCTTCGGCAACGAATAATCCATGACGAGCGTGGTGTGACCCTGCGTA
ACGGACTGCTGTTTGCTAGAGAGGAGAAAGCTTCTGCCGCCTATGCAATG
CGCATGCCTTACGACCCGTCTGCGATTGTGGTAGACTCTGCTGCCTTGCC
TGCCTTCGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AATTTCGGTCATTCACGTGCCGTCGCCGTACCAGCGTGCAGACTTCCTTA
CGAAGAGTTTGTCGAAGGATGCTTTCGAGTCTCACCGTGATTTTGTGATG
AATTTGGCATGAACATTTTGTTGTTTTTCTGATAGGTTGTATTTTGGTTT
TGGTTTGTTTCTCGTTTTGTTTCCCGTTTTCTTTCATTTCCCGCGCCAAG
TATTTGTTACGCGCGATGCAGCATTCATATTCCTTTGAATTGTTTTTCTT
TCTCTTATGTTATTCTGTCTTGGTGGCATATCGTCTGGGAAAGACGTCTT
TTGGTTGAGATATCGGGTGTTAGCGAAGTTTTCAGTGAGAGACTGTTGCG
AGCAGGGGGGATGTTAGATATACTCGCAGCAGTATCTGGTCGTGAGGATC
CCAGGGGATACGTGTTGGAAATTTCGTGTGTAGTAGGGTACCACCGGTGC
AGTCACGGGGATCCTTTTGGCGTGGTTGGTGCGATGGAGCTTGCGTGCTT
TTTGCGCACTTCTTCTTCCCTCTCTCTCTCCACCACCACC back to topprotein sequence of EsuBft468_5a-0001 >EsuBft468_5 ID=EsuBft468_5|Name=EsuBft468_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=404bp
MEGIDLSALSEEEVQQEVEEIVQQRVQAELEANRINEGEVTYAPPPAGNP
VPPTGSQPSPSSQGKTPSFNDPSSVAHIVAQAAKATAEAIAEQQGFARSG
TLRVNPGSEIEPWLGSVKKEQDLYIMFDIFRVTEFYQEKKQSEKSRLEQD
WKQLEMKESESPQDYIARSEALRLRLASVGTIKDETDANKDIARGLPSSL
YAVQKGILLAHDVLTLRTLETVVRDAHVEMERERSKGERREVELALAASG
MGRRGGGSGGASGGQDGGHAAAGGQNRDGEKKNSDMFNDEPGGFCRYHQS
ELHTNEQCRLQQQLRRARSIEGAKERRSGGGSRGGGGSQRGGRPPPGPGR
GGGRWVRIEGQQHHTGHGGGGWSQASPPPRPLRGRGPGGRLGRHPGGRGP
AGRX back to topmRNA from alignment at Scaffold_189:359812..365583+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft468_5a-0001 ID=EsuBft468_5a-0001|Name=EsuBft468_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5772bp|location=Sequence derived from alignment at Scaffold_189:359812..365583+ (Ectocarpus subulatus male Bft15b)
ATGGAGGGCATCGACCTCTCCGCCCTTAGCGAGGAAGAGGTACAGCAAGA
AGTGGAGGAGATCGTCCAGCAACGAGTGCAAGCCGAACTCGAAGCCAACA
GGATAAACGAGGGTGAAGTCACCTACGCCCCACCACCTGCCGGCAACCCG
GTCCCACCTACCGGCAGCCAGCCATCACCCTCCAGCCAGGGTAAAACACC
TTCCTTCAACGACCCCAGCAGCGTCGCACACATCGTGGCGCAAGCGGCCA
AGGCGACAGCTGAGGCCATCGCTGAACAACAGGGCTTTGCCCGCTCAGGC
ACGTTACGTGTAAATCCAGGCTCAGAAATCGAACCTTGGCTTGGTAGTGT
GAAGAAGGAGCAGGATCTGTACATTATGTTTGATATTTTTCGTGGTAAGA
TGATTTCATATTTTCAGGAGGAGGGTGTGCACGATGCGTTGGAACTGGAG
GTTGAGGTCAAGGTCGGGAAGAGAGGTGTGAATGTAGGAGACCTTCGGAG
ACTTTTTGGTAATGAAGTGGTAGACAAATCTTTCAAATTGTGGAATATCC
TTATCAGCAAGGTTTTGTATCCCCCGATTCAGAGCTTGATTCTGGCGTGT
GAGAGTCCTCAAAAAGGCTGGAAAATAGTGACAGAGTTCTACCAGGAGAA
AAAGCAGTCAGAAAAGTCGAGGTTGGAGCAGGACTGGAAGCAGTTGGAGA
TGAAAGAGTCCGAGAGTCCACAGGATTACATTGCCCGCTCAGAGGCCCTT
CGCCTGCGTCTCGCATCTGTAGGCACGATTAAGGATGAAACAGATGCCAA
CAAAGACATTGCTCGTGGCCTTCCCTCTTCGTTGTATGCCGTGCAAAAAG
GAATACTGCTTGCCCATGATGTCCTGACGTTGCGTACCCTTGAGACTGTG
GTGAGGGACGCCCACGTGGAGATGGAGCGCGAGAGGAGCAAGGGGGAGAG
GCGCGAGGTGGAGCTCGCTCTCGCCGCGTCCGGCATGGGCCGGCGCGGCG
GGGGCAGTGGGGGGGCATCCGGGGGTCAAGACGGGGGTCACGCAGCAGCT
GGCGGCCAAAATCGTGACGGAGAGAAGAAAAATAGTGACATGTTCAACGA
CGAACCCGGCGGATTTTGCCGCTACCACCAGTCCGAGCTTCACACCAACG
AGCAGTGTCGTCTCCAGCAGCAACTGCGGCGCGCGCGTTCGATAGAGGGC
GCCAAGGAACGCCGCTCGGGCGGTGGCAGCCGCGGTGGCGGCGGTAGCCA
GCGAGGAGGTAGACCGCCGCCGGGGCCCGGCCGCGGTGGCGGGCGATGGG
TGAGGATAGAAGGGCAGCAGCACCACACCGGTCATGGTGGCGGTGGCTGG
AGCCAAGCCTCACCCCCCCCGAGGCCTCTTCGTGGACGTGGGCCTGGTGG
TCGTCTGGGGCGTCACCCGGGGGGTCGTGGGCCCGCGGGACGCNNNNNNN
NNNNNNNNNNNATAGTTCTGTTCTCGGCAGCGCCTGGCGAGGGGTCCGTC
CCCGGAGATCTCTACTCACAGCCCGGGATTCTACGAGCCGAGAGTGTATC
TTTTGATAGTATTTGGTAAACCATTTGTCTAGTCATCGATGACTGTGCAC
GTAGTCAAATGGTCAGCCTTTAGCGAATAAGGAGATGAAAGTGGTCGCGA
GTCTGAGTTTCAACTTGTTTTCGACACATGCTGTTTCCCTTCGGCAACGA
ATAATCCATGACGAGCGTGGTGTGACCCTGCGTAACGGACTGCTGTTTGC
TAGAGAGGAGAAAGCTTCTGCCGCCTATGCAATGCGCATGCCTTACGACC
CGTCTGCGATTGTGGTAGACTCTGCTGCCTTGCCTGCCTTCGTGANNNNN
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NNNNNNNNNNNNNNNNNNNNNNAGAGAGGAAGGAAATTTCGGTCATTCAC
GTGCCGTCGCCGTACCAGCGTGCAGACTTCCTTACGAAGAGTTTGTCGAA
GGATGCTTTCGAGTCTCACCGTGATTTTGTGATGAATTTGGCATGAACAT
TTTGTTGTTTTTCTGATAGGTTGTATTTTGGTTTTGGTTTGTTTCTCGTT
TTGTTTCCCGTTTTCTTTCATTTCCCGCGCCAAGTATTTGTTACGCGCGA
TGCAGCATTCATATTCCTTTGAATTGTTTTTCTTTCTCTTATGTTATTCT
GGTAAAGTCTTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGT
CTTGGTGGCATATCGTCTGGGAAAGACGTCTTTTGGTTGAGATATCGGGT
GTTAGCGAAGTTTTCAGTGAGAGACTGTTGCGAGCAGGGGGGATGTTAGA
TATACTCGCAGCAGTATCTGGTCGTGAGGATCCCAGGGGATACGTGTTGG
AAATTTCGTGTGTAGTAGGGTACCACCGGTGCAGTCACGGGGATCCTTTT
GGCGTGGTTGGTGCGATGGAGCTTGCGTGCTTTTTGCGCACTTCTTCTTC
CCTCTCTCTCTCCACCACCACC back to topCoding sequence (CDS) from alignment at Scaffold_189:359812..365583+ >EsuBft468_5a-0001 ID=EsuBft468_5a-0001|Name=EsuBft468_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1212bp|location=Sequence derived from alignment at Scaffold_189:359812..365583+ (Ectocarpus subulatus male Bft15b)
ATGGAGGGCATCGACCTCTCCGCCCTTAGCGAGGAAGAGGTACAGCAAGA
AGTGGAGGAGATCGTCCAGCAACGAGTGCAAGCCGAACTCGAAGCCAACA
GGATAAACGAGGGTGAAGTCACCTACGCCCCACCACCTGCCGGCAACCCG
GTCCCACCTACCGGCAGCCAGCCATCACCCTCCAGCCAGGGTAAAACACC
TTCCTTCAACGACCCCAGCAGCGTCGCACACATCGTGGCGCAAGCGGCCA
AGGCGACAGCTGAGGCCATCGCTGAACAACAGGGCTTTGCCCGCTCAGGC
ACGTTACGTGTAAATCCAGGCTCAGAAATCGAACCTTGGCTTGGTAGTGT
GAAGAAGGAGCAGGATCTGTACATTATGTTTGATATTTTTCGTGTGACAG
AGTTCTACCAGGAGAAAAAGCAGTCAGAAAAGTCGAGGTTGGAGCAGGAC
TGGAAGCAGTTGGAGATGAAAGAGTCCGAGAGTCCACAGGATTACATTGC
CCGCTCAGAGGCCCTTCGCCTGCGTCTCGCATCTGTAGGCACGATTAAGG
ATGAAACAGATGCCAACAAAGACATTGCTCGTGGCCTTCCCTCTTCGTTG
TATGCCGTGCAAAAAGGAATACTGCTTGCCCATGATGTCCTGACGTTGCG
TACCCTTGAGACTGTGGTGAGGGACGCCCACGTGGAGATGGAGCGCGAGA
GGAGCAAGGGGGAGAGGCGCGAGGTGGAGCTCGCTCTCGCCGCGTCCGGC
ATGGGCCGGCGCGGCGGGGGCAGTGGGGGGGCATCCGGGGGTCAAGACGG
GGGTCACGCAGCAGCTGGCGGCCAAAATCGTGACGGAGAGAAGAAAAATA
GTGACATGTTCAACGACGAACCCGGCGGATTTTGCCGCTACCACCAGTCC
GAGCTTCACACCAACGAGCAGTGTCGTCTCCAGCAGCAACTGCGGCGCGC
GCGTTCGATAGAGGGCGCCAAGGAACGCCGCTCGGGCGGTGGCAGCCGCG
GTGGCGGCGGTAGCCAGCGAGGAGGTAGACCGCCGCCGGGGCCCGGCCGC
GGTGGCGGGCGATGGGTGAGGATAGAAGGGCAGCAGCACCACACCGGTCA
TGGTGGCGGTGGCTGGAGCCAAGCCTCACCCCCCCCGAGGCCTCTTCGTG
GACGTGGGCCTGGTGGTCGTCTGGGGCGTCACCCGGGGGGTCGTGGGCCC
GCGGGACGCNNN back to top
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