EsuBft1112_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1112_3a-0001
Unique NameEsuBft1112_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_189contigScaffold_189:7810..11481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1112_3
Protein domainsIPR009069
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length106
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCysteine alpha-hairpin motif superfamily
Ec32 orthologEc-26_005030.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1112_3aEsuBft1112_3aEctocarpus subulatus male Bft15bgeneScaffold_189 7810..11481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1112_3a-0001EsuBft1112_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_189 7844..10659 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1112_3a-0001-exonEsuBft1112_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_189 7810..7939 +
EsuBft1112_3a-0001-exonagat-exon-1405Ectocarpus subulatus male Bft15bexonScaffold_189 9449..9517 +
EsuBft1112_3a-0001-exonagat-exon-1404Ectocarpus subulatus male Bft15bexonScaffold_189 10621..11481 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1112_3a-0001-exonagat-five_prime_utr-678Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_189 7810..7843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1112_3a-0001-cdsEsuBft1112_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_189 7844..7939 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1112_3a-0001-exonagat-three_prime_utr-1071Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 10660..11481 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1112_3a-0001 ID=EsuBft1112_3a-0001|Name=EsuBft1112_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1060bp|location=Sequence derived from alignment at Scaffold_189:7810..11481+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCACACGCTGCTAGCTTCAAACTGCGCGAAACGATGACGGCAAGCAAGA
TGGAGTCGGAGTGCAGAGAATTCGCTGCGGAAAGCTTCAAGTGCATGGAA
AGCTTCGGCACCAATCGAGAAAAGGCAAAGGACGCCTGCGGGCCGTTCTT
CGAGCGCTACAAGGAATGCCTGCAAAGAGAATCAGACGCGTTAAAGAAGG
CACAAAGGGAGGGCCCACCGCGAAGATTCTTCGGATGAACAACACTGCTG
CAGCGCACCAAGCAACAGCAAGAAGAATAGATACATAGGTAGATGGATGG
AAGGCTGTACAAGAATTTGGACGACGAGCGGGACGAGGACGACGCCAGCG
GCCACCCTTTCCCTCGTGGGGTTGGTTTTCTGTTGTTTTTGTTTTTTTGG
GAGTTTACTCTTTTCTTTCAGAATTAGCATCTTTTTTTTTTGTCGTTTCA
CGTTCCAGATAGTAAGAAAGCAGTAGGTCACAAGAAACACGGCAGGCTTC
TCGTCGAGTGTAGCAATGTTCGGGTCTTGTGTCTTCTTGTCAAGGCGTAG
GAAGAGGAATGTTCCCACTATCGATGCCAACGCAGCAATCTGGAGGTGTG
GTAGAGCGCCGTGAATTCACCCCGTGTTGATGTTCTCGAGTGTTGCAAGG
TTGGCTTATGGCGATGCTGCCTCGGAACAAAGGGGCAGTTTTGACGATGC
AATAGGGGTGAGGCTCATTGAAGACATACAGTGGGGGTCCCGGTTTTGTG
CTGGCACGTGCCCTGAAAATTCATCGGCACCACATACAATACCGGACCGG
CTCGATTCAAAGTGCCGACAATGACTTGGAAATTCGGTGTGTGCCCGCCA
ATAACCCGGGCACTATACCGGGGCATTGGCACTGTTCAACCGGCACTAAA
GAGGGCACCCTCTGTGCTCCGTTCTTGTTTGCTGGCTCCTTTTTTGTTTT
GGGATCTTCGACATCTACAAATTGCGCCTCACAGATGGTTTAGCTAGCCG
TAAGGAGGAAGTTCGATATGCGACACGGTTATCGCGCAACAAGCATCGGT
CTCACACTTG
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protein sequence of EsuBft1112_3a-0001

>EsuBft1112_3 ID=EsuBft1112_3|Name=EsuBft1112_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=67bp
MTASKMESECREFAAESFKCMESFGTNREKAKDACGPFFERYKECLQRES
DALKKAQREGPPRRFFG
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mRNA from alignment at Scaffold_189:7810..11481+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1112_3a-0001 ID=EsuBft1112_3a-0001|Name=EsuBft1112_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3672bp|location=Sequence derived from alignment at Scaffold_189:7810..11481+ (Ectocarpus subulatus male Bft15b)
TTCACACGCTGCTAGCTTCAAACTGCGCGAAACGATGACGGCAAGCAAGA
TGGAGTCGGAGTGCAGAGAATTCGCTGCGGAAAGCTTCAAGTGCATGGAA
AGCTTCGGCACCAATCGAGAAAAGGCAAAGGTGTGATGTTGATGTTCGTG
CACAGCATGCATAGACTGCTGTACATCATCTACCTGTGTACTCCTGCTTG
TGCGCTGCTGTGCACCCTATCAACCACTTGCCAGAGTACTGCTGTTCAGC
GGCCAAGACCGTTACATCACACCCAATTCCACCCATCCCTCTCAATTCCT
GTGAGGTAAATATCGATGATCCAACGTCAGATCGCACTCGTCGCGACTCG
AACCCGTAGCTAGGGAGGCGTGTCGGTCGTTCGCTGTTCGTCTTCGGATT
GCGCATGGAATGGAGGGATCAACTCGATTGTTGTCAACTACCTTAAGGTT
CCGACGTATGAAGTTTGTTTGTTGGTGTTAATTCTGTCGCACGATGTATC
CGCACGTGAAAACACGAAGACACATCCTTGTACCGCTGTAGAGCAACGGG
GCTAATCCTCCCAAGTACTGGGAGCCCAAATGGGACACTTTGGGGGGACA
AATCACTCAAATGCTTGTTTACCGCACCGTGGTCGTCACTATGCTTTGCT
CGTGAGACGTGCGTGGGAAACCTTGATCTAGCATGTTTGTGTGAGGTGGT
ACGCTGTGTAATATCCTGCCGTGTGATTCCTGTGTGCCTCTCCTGACCCT
CTGACTTGTGTACACAATCTCCCAAGCCGCGAGTCCCCTTGTTGGTAAAA
CTGAACGTAGCCTAGTAAACTGGGAAAAATTCTTACTTGCCTTCACCATA
GAAAGTGTCCCCGGTGCATTTGGAGACACTTTCCATACTGAAGCCAAGTC
AGCCTTCGGCCCTGGGGACTGTACAGCCTCTCCCAATGAAAGGACTGTAC
AGCCTCTCCCAATGAACGGACGCGTTTTTTTCTAGACCCAATAACCTGTA
ACTAACAAGGTACTGTAGGAAGGTTAGCACACGAGATTGAACGATCCCTG
TTCGAGTCCCCCATGGGGCACATTTTTTGCCTACACGTTGTCGTGCTTGT
TTTTTTCACTCGTATGTATTTGCTGAAAAAAGTAGCCTTTTCCGCTGCAG
ATTGCAAGATACATCTATCTCACAAGTATTTATCTATCTCATGACTTCCG
GAATGTTCACACCGCGTAGCCGTGCACTTGTTCAAATACAGCCGCTGGCA
TCAACGTCACACTGCTGTTTATTGTGCTACAGCAGTGTACTGCTGTGGTG
TCGTGCACACTTACCGTATAGTGGATTGGGTCAGCTCCCACTATATAGAA
ACTCCCTTTGAAATAGACTCTCAATACCTCCGTCAAGTATCTCCTCTTGT
TTCAGAGCGCTCCCGTGCCAAGCCTTGTTCTACAGAGTTCAGCTTTTTGT
CAGCGCCTCATGGGCTTTGTTTCCAAGGGTTCCGTTGATTCGAGCTACTT
GATCTAGCCAGATACATGCGGGCACAACATCATCCAGCCGTCTCACGCTC
CATGTTGCTGCTGCCGCTGTTTTCGTCGGTTTCATCTGCGGGCTCCTAAC
CGTGCACCACCCGCTCATCGCCACGGTCAACGTCGGCAGGACGCCTGCGG
GCCGTTCTTCGAGCGCTACAAGGAATGCCTGCAAAGAGAATCAGACGCGT
TAAAGAAGGTATGTACCTTTGTAATTCCCAATGTGGCTCAAGTGACTACG
CCTTGAACGGCCAGGCCAACACCTCCAGGTCTCCCTCGTCCACGAGAGTT
CAATCGTTACGACGCGTGTGACTTAACCAACGCACGCGTGCCTGATTCCG
AGTGACCTGCTGCCAATGTAAACTTTGTTGCGATTTGAATGCGTGTAAAT
ATGGTGGCACTCTTGTTGTTGTCTTCCCAGTTCGCACGTCTTAGTTCCGA
GTGACCTGCTGTCCATTCGATGTGCTTTCGATTTTATCGTTCCCACCCCC
CCCCTCCCTCGGTGTTTGCCATTGGGGTTGGGCTTTCGTCGCTTGGCAAC
GACGTTGTAAAACAAGCCGCCCCCCCCGGTGTTTGCCATCGGGATTGGGT
TTTCGTCGCTTGGCAACGACGTTCTAAAACAAGCCAATTCGCTTCGTGAA
CTCGGCAACCTCCCGTTTTTTTTACCTCCGTTTTTTTTTTGGCGGTATCC
ATAATGGTGGTCGAGTAGTATGCACCCCCGAGGCAGTTACACAGTGCTTA
CAATTGTCTCTGCACGTGAAAGCACCAGAAAGTAAATTAAGTCATACGCA
GCTGTCATCCGTACGCAAGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCT
CCGCGCAAGGGGGATGATCGCACCACGTTGTGTTAAGATGGTCAAGCACC
CTCGAGGCAGTTACACAGTGCTTACAGCTGTCTCTGGAAGTGAAGCACCA
GAAAATAAATTAAGTCGTACGCAGCTGTCATCCGCATGTTAGGAAGTAAG
CACAAGATGCCGAACACCCTTAGCAGGATGCAGCGCACCCTTCATGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCGG
CGGCACCATAGGCACAAAGGGAGGGCCCACCGCGAAGATTCTTCGGATGA
ACAACACTGCTGCAGCGCACCAAGCAACAGCAAGAAGAATAGATACATAG
GTAGATGGATGGAAGGCTGTACAAGAATTTGGACGACGAGCGGGACGAGG
ACGACGCCAGCGGCCACCCTTTCCCTCGTGGGGTTGGTTTTCTGTTGTTT
TTGTTTTTTTGGGAGTTTACTCTTTTCTTTCAGAATTAGCATCTTTTTTT
TTTGTCGTTTCACGTTCCAGATAGTAAGAAAGCAGTAGGTCACAAGAAAC
ACGGCAGGCTTCTCGTCGAGTGTAGCAATGTTCGGGTCTTGTGTCTTCTT
GTCAAGGCGTAGGAAGAGGAATGTTCCCACTATCGATGCCAACGCAGCAA
TCTGGAGGTGTGGTAGAGCGCCGTGAATTCACCCCGTGTTGATGTTCTCG
AGTGTTGCAAGGTTGGCTTATGGCGATGCTGCCTCGGAACAAAGGGGCAG
TTTTGACGATGCAATAGGGGTGAGGCTCATTGAAGACATACAGTGGGGGT
CCCGGTTTTGTGCTGGCACGTGCCCTGAAAATTCATCGGCACCACATACA
ATACCGGACCGGCTCGATTCAAAGTGCCGACAATGACTTGGAAATTCGGT
GTGTGCCCGCCAATAACCCGGGCACTATACCGGGGCATTGGCACTGTTCA
ACCGGCACTAAAGAGGGCACCCTCTGTGCTCCGTTCTTGTTTGCTGGCTC
CTTTTTTGTTTTGGGATCTTCGACATCTACAAATTGCGCCTCACAGATGG
TTTAGCTAGCCGTAAGGAGGAAGTTCGATATGCGACACGGTTATCGCGCA
ACAAGCATCGGTCTCACACTTG
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Coding sequence (CDS) from alignment at Scaffold_189:7810..11481+

>EsuBft1112_3a-0001 ID=EsuBft1112_3a-0001|Name=EsuBft1112_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=204bp|location=Sequence derived from alignment at Scaffold_189:7810..11481+ (Ectocarpus subulatus male Bft15b)
ATGACGGCAAGCAAGATGGAGTCGGAGTGCAGAGAATTCGCTGCGGAAAG
CTTCAAGTGCATGGAAAGCTTCGGCACCAATCGAGAAAAGGCAAAGGACG
CCTGCGGGCCGTTCTTCGAGCGCTACAAGGAATGCCTGCAAAGAGAATCA
GACGCGTTAAAGAAGGCACAAAGGGAGGGCCCACCGCGAAGATTCTTCGG
ATGA
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