EsuBft778_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft778_8a-0001
Unique NameEsuBft778_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_161contigScaffold_161:101898..103908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft778_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length51
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft778_8aEsuBft778_8aEctocarpus subulatus male Bft15bgeneScaffold_161 101898..103908 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft778_8a-0001-exonEsuBft778_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_161 101898..102210 -
EsuBft778_8a-0001-exonagat-exon-108585Ectocarpus subulatus male Bft15bexonScaffold_161 103705..103908 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft778_8a-0001-exonagat-three_prime_utr-21361Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_161 101898..102120 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft778_8a-0001-cdsEsuBft778_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_161 102121..102210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft778_8a-0001EsuBft778_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_161 102121..103908 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft778_8a-0001 ID=EsuBft778_8a-0001|Name=EsuBft778_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=517bp|location=Sequence derived from alignment at Scaffold_161:101898..103908- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCAGGAGAATACAACGGCGTTGGCGCGCTGTCGAAGATTCGTTCGC
TTTCGCCGACTTGGGGCGGATATTGCTGAGAGCTTGGTCCTTCGATGTCA
CCGTGCTGTTTGGCGTTGCGGAGGAGCTGAGCTTCGTGTCCTATGTCACT
AACGACGGACCATTCTATGCACACGTGCCTGGCGAATCGACTGGTGCTGT
GCAGGCGAACATCCAACGATACGTTACCGACAAAATATCAAGAAGACTGG
CATGGACAAGCGAACGGGGTCCGGCGAAGTCGACACGCGCATGACGATGA
CGATACTGCTGGACGAGCATCGTGGATACCGTCCGGGCACAATTTGGTCC
CAACCAGAGGGGGGCTAGGGAATTATTTGGGCGGGCGGGCGGGGAATTTC
GCGCGGACGTGGTGCCTCAAGGGAACTGTAGATTTGGAGTCGTGGGCAGG
GGAGAGAGGAGCTTTTGCTTGGGCTGGGACGAGGCGACAGGCGCTTGTGT
ATGGGCTGTGGGGGGAG
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protein sequence of EsuBft778_8a-0001

>EsuBft778_8 ID=EsuBft778_8|Name=EsuBft778_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=97bp
MCRRIQRRWRAVEDSFAFADLGRILLRAWSFDVTVLFGVAEELSFVSYVT
NDGPFYAHVPGESTGAVQANIQRYVTDKISRRLAWTSERGPAKSTRA
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mRNA from alignment at Scaffold_161:101898..103908-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft778_8a-0001 ID=EsuBft778_8a-0001|Name=EsuBft778_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2011bp|location=Sequence derived from alignment at Scaffold_161:101898..103908- (Ectocarpus subulatus male Bft15b)
ATGTGCAGGAGAATACAACGGCGTTGGCGCGCTGTCGAAGATTCGTTCGC
TTTCGCCGACTTGGGGCGGATATTGCTGAGAGCTTGGTCCTTCGATGTCA
CCGTGCTGTTTGGCGTTGCGGAGGAGCTGAGCTTCGTGTCCTATGTCACT
AACGACGGACCATTCTATGCACACGTGCCTGGCGAATCGACTGGTGCTGT
GCAGGTATGTGCGTTACCTATGCACTGATGTGATACCTCTTGAGCGAACC
GGTGCAAAGCTTTGTTGTGAACGAACATGTGAAATTGTCGGCATTTAGCA
GCACAAGGGTCGTCGTGTTGGGTCTGTATTGGCGTGGTCACAGCACCAGC
AGTATAGAAGCGTTCGTTTACGGCGATGTACTGTAGATTCGAAACACGCT
CCTGGTGTACGACGTATTGTTGTGGCCCACCTTTGAGTCGACTATGTAGG
GGCGGAGCTTGCGTGGAGCTATAATCTAGGGATGAGCAAGCTCTGTCGTA
CTTTGTTGGGAGGATTTTGAAGGAGACAACCAACTTGAGACAACCCCCCT
CTTCAGCAACGCCGTTTTAGCACTGGTTCTACAGCAGTGAAACAGGTTGA
CTGAGGTACAGCAGGGCACAGTCGAACTTGTTTTTCGTGCTCAATGCTCC
GGAACTGGTCTGTGCTGTTTGCTTTGACTCTTGGGTTATCTTTCGAGCTG
GGTCACAATCTCAAAGAGGTTGATAATTCAGTATCGTCTGCAAGGGCTTC
AATCCTTCCCTTCCGACACATCACACCACCACCCTAGACCCGCCTATAGC
TACCTGAACAGATATCGGCTGTTCGGGCGTGTGCCTCCAGAAATAGCCTT
TCGAAAAACACGTCAATAATGCCACAGGGCTTCCCTCCGGGATTCGGTGC
AGTACCGAGTAACGTATGGTACAGGGTATGAAGTGGGATGAGGGGTGCTT
CCGGAGACGCTGTTGTTGTTGTTGTTGTTGTCTTCACATTAAAAACCATC
CCGGTCTCTCTATCCAGTACCTCCTTCTGTCTCAATCTCTCCGTACTAAT
CCATCACTTGACTCGGCCAATTTGACGCTAGCGGAAGAGAAACAGTAGCA
ACGAGGCACGCCGTCATCCCCCCAACCCTCTTCACCCACCCCTTCCCCCA
GCTTGTAAACCTCGCCTTGGGGCCTCATGTGGGTATATATTTTGTTGTTG
CGACAATATTTTCTCGGAAACGAATGTTGACAATGCACCTGTCGTGCGGG
AGGCCCTGGGTTGTGAGTTGGATACATAGCTNGCGGAAGAGAAACAGTAG
CAACGAGGCACGCCGTCATCCCCCCAACCCTCTTCACCCACCCCTTCCCC
CAGCTTGTAAACCTCGCCTTGGGGCCTCATGTGGGTATATATTTTGTTGT
TGCGACAATATTTTCTCGGAAACGACTGTTGACAATGCACCTGTCGTGCG
GGAGGCCCTGGGTTGTGAGTTGGATACATAGCTTCAGCTAACAGGAAACC
CAACTGCCGTGCTGTTACCTTGCCCCTGCAAATTTCGTGATCTAATGCCC
AAGGCGAAGATCCAACGATACGTTACCGACAAAATATCAAGAAGACTGGC
ATGGACAAGCGAACGGGGTCCGGCGAAGTCGACACGCGCATGACGATGAC
GATACTGCTGGACGAGCATCGTGGATACCGTCCGGNNNNNNNNNNNAGGC
GAACATCCAACGATACGTTACCGACAAAATATCAAGAAGACTGGCATGGA
CAAGCGAACGGGGTCCGGCGAAGTCGACACGCGCATGACGATGACGATAC
TGCTGGACGAGCATCGTGGATACCGTCCGGGCACAATTTGGTCCCAACCA
GAGGGGGGCTAGGGAATTATTTGGGCGGGCGGGCGGGGAATTTCGCGCGG
ACGTGGTGCCTCAAGGGAACTGTAGATTTGGAGTCGTGGGCAGGGGAGAG
AGGAGCTTTTGCTTGGGCTGGGACGAGGCGACAGGCGCTTGTGTATGGGC
TGTGGGGGGAG
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Coding sequence (CDS) from alignment at Scaffold_161:101898..103908-

>EsuBft778_8a-0001 ID=EsuBft778_8a-0001|Name=EsuBft778_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=294bp|location=Sequence derived from alignment at Scaffold_161:101898..103908- (Ectocarpus subulatus male Bft15b)
ATGTGCAGGAGAATACAACGGCGTTGGCGCGCTGTCGAAGATTCGTTCGC
TTTCGCCGACTTGGGGCGGATATTGCTGAGAGCTTGGTCCTTCGATGTCA
CCGTGCTGTTTGGCGTTGCGGAGGAGCTGAGCTTCGTGTCCTATGTCACT
AACGACGGACCATTCTATGCACACGTGCCTGGCGAATCGACTGGTGCTGT
GCAGGCGAACATCCAACGATACGTTACCGACAAAATATCAAGAAGACTGG
CATGGACAAGCGAACGGGGTCCGGCGAAGTCGACACGCGCATGA
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