EsuBft1133_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1133_10a-0001
Unique Name	EsuBft1133_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_99	contig	Scaffold_99:80948..82131 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FTE5
ProteomeId	EsuBft1133_10
Protein domains	IPR029063
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	85
Hectar predicted targeting category	other localisation
Evalue	2.07e-156
EggNOG OGs	2E0VG@1\|root,2S88X@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1133_10a	EsuBft1133_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_99 80948..82131 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1133_10a-0001-exon	agat-exon-105991	Ectocarpus subulatus male Bft15b	exon	Scaffold_99 80948..81474 +
EsuBft1133_10a-0001-exon	EsuBft1133_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_99 81804..82131 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1133_10a-0001-cds	EsuBft1133_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_99 80948..81474 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1133_10a-0001	EsuBft1133_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_99 80948..82131 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_99:80948..82131+
coding sequence from alignment at Scaffold_99:80948..82131+

spliced messenger RNA

>EsuBft1133_10a-0001 ID=EsuBft1133_10a-0001|Name=EsuBft1133_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=855bp|location=Sequence derived from alignment at Scaffold_99:80948..82131+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACCACATCCAAAGCGCTCGAAGTTGGAAAATCGGCCCAAAATCGG
CAAACATCCCATCAAGACACCAAGCCTGCAGTATCTCACCGCCTCTCTGC
CGATATCACGTGCCACGTCCTTGCAATTGTTCTACTTGAGCAGAATGGAG
TATTGGGCCGAGACCCGGAGTGGGCCAGGTTCGACAGTGCACAACACGAA
CAGAATACGGCTAGCCTTGGAAGAGGTAATCCGTTCCAATGGGGTGACGA
GCATCCTCGACGCCCCCTGCGGAGACGCGACCTGGATGCCTCTTGTTCGT
GGTATCGATCAAGTCCGATACCTCGGAGTAGATATCTCCCCCAGCGTCGT
GGAAGACAATCGACGCAAGTTTTCCAAACTACAGGACCACAGTGGGGGGT
CGGGAGATGAAGCCGTGGCTTCGGCAAGCGCAGGAGGCTTACATGGGGCT
TCGTTTATCCAGGCCGATCTCGTTGAGCGGATACCACCCTCCATGGATGG
AAAGCCATACGACCTCATCTTCCTCAGGGACGTCATGCTCCACCTCGCCC
GTCAACACAACGTGCAGATGCTGCAGAACATAGAGGCTAGTGGTGCGCGA
TTCTTGATGGCGAGCACGAACGTTGACGGCAACGACAACTGGAAGGCTGA
TACCTTTCGGCCGGCGGACGGGCTCTTGGTAAATCTTTCTCTACCACCAT
ACTGCTTGCGGCCGCCGATTGCGCTCTACTCCGACGCGATCCCCGAACGA
CCGGGCCAGCGTATGGGGCTGTGGGAGTTGGATCCCGCCAGGCCGCTTGT
TGGTTCGAATGAGCTATGTGACCATATTTCCCCAGGTCCCCAGGAGCTAC
CCTAA

protein sequence of EsuBft1133_10a-0001

>EsuBft1133_10 ID=EsuBft1133_10|Name=EsuBft1133_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=284bp
MPPHPKRSKLENRPKIGKHPIKTPSLQYLTASLPISRATSLQLFYLSRME
YWAETRSGPGSTVHNTNRIRLALEEVIRSNGVTSILDAPCGDATWMPLVR
GIDQVRYLGVDISPSVVEDNRRKFSKLQDHSGGSGDEAVASASAGGLHGA
SFIQADLVERIPPSMDGKPYDLIFLRDVMLHLARQHNVQMLQNIEASGAR
FLMASTNVDGNDNWKADTFRPADGLLVNLSLPPYCLRPPIALYSDAIPER
PGQRMGLWELDPARPLVGSNELCDHISPGPQELP

mRNA from alignment at Scaffold_99:80948..82131+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1133_10a-0001 ID=EsuBft1133_10a-0001|Name=EsuBft1133_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1184bp|location=Sequence derived from alignment at Scaffold_99:80948..82131+ (Ectocarpus subulatus male Bft15b)
ATGCCACCACATCCAAAGCGCTCGAAGTTGGAAAATCGGCCCAAAATCGG
CAAACATCCCATCAAGACACCAAGCCTGCAGTATCTCACCGCCTCTCTGC
CGATATCACGTGCCACGTCCTTGCAATTGTTCTACTTGAGCAGAATGGAG
TATTGGGCCGAGACCCGGAGTGGGCCAGGTTCGACAGTGCACAACACGAA
CAGAATACGGCTAGCCTTGGAAGAGGTAATCCGTTCCAATGGGGTGACGA
GCATCCTCGACGCCCCCTGCGGAGACGCGACCTGGATGCCTCTTGTTCGT
GGTATCGATCAAGTCCGATACCTCGGAGTAGATATCTCCCCCAGCGTCGT
GGAAGACAATCGACGCAAGTTTTCCAAACTACAGGACCACAGTGGGGGGT
CGGGAGATGAAGCCGTGGCTTCGGCAAGCGCAGGAGGCTTACATGGGGCT
TCGTTTATCCAGGCCGATCTCGTTGAGCGGATACCACCCTCCATGGATGG
AAAGCCATACGACCTCATCTTCCTCAGGTCAGATGCTGAAGAACCGCGCC
TGTCTAGCGAAGCGTCGTTCGAGACATCGTCTACCGCAGTCCAATAACAG
GGCCCCTGCGGCCGTTTCGGGCTGTTGAGAGCGCTTCATTCAGCATTGAC
TGAAATTTATGTTGCCATGCCGTGGTGGTGTGGAACGTTTGCTACACACT
TTCATCGGTGTTCTTGAAGCCCACCATGCAGAGCCCAAGAGGAAGTAACG
ATTGTCTCACTTTTAAGGACCCCTTGGGCTGGCAACGCGGGCCGTCCATA
GCTGAACACGTCAATGCATGGTTTGTTGTTTATCTCTTTGCGTCGGTTTT
TGGCAGGGACGTCATGCTCCACCTCGCCCGTCAACACAACGTGCAGATGC
TGCAGAACATAGAGGCTAGTGGTGCGCGATTCTTGATGGCGAGCACGAAC
GTTGACGGCAACGACAACTGGAAGGCTGATACCTTTCGGCCGGCGGACGG
GCTCTTGGTAAATCTTTCTCTACCACCATACTGCTTGCGGCCGCCGATTG
CGCTCTACTCCGACGCGATCCCCGAACGACCGGGCCAGCGTATGGGGCTG
TGGGAGTTGGATCCCGCCAGGCCGCTTGTTGGTTCGAATGAGCTATGTGA
CCATATTTCCCCAGGTCCCCAGGAGCTACCCTAA

Coding sequence (CDS) from alignment at Scaffold_99:80948..82131+

>EsuBft1133_10a-0001 ID=EsuBft1133_10a-0001|Name=EsuBft1133_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=855bp|location=Sequence derived from alignment at Scaffold_99:80948..82131+ (Ectocarpus subulatus male Bft15b)
ATGCCACCACATCCAAAGCGCTCGAAGTTGGAAAATCGGCCCAAAATCGG
CAAACATCCCATCAAGACACCAAGCCTGCAGTATCTCACCGCCTCTCTGC
CGATATCACGTGCCACGTCCTTGCAATTGTTCTACTTGAGCAGAATGGAG
TATTGGGCCGAGACCCGGAGTGGGCCAGGTTCGACAGTGCACAACACGAA
CAGAATACGGCTAGCCTTGGAAGAGGTAATCCGTTCCAATGGGGTGACGA
GCATCCTCGACGCCCCCTGCGGAGACGCGACCTGGATGCCTCTTGTTCGT
GGTATCGATCAAGTCCGATACCTCGGAGTAGATATCTCCCCCAGCGTCGT
GGAAGACAATCGACGCAAGTTTTCCAAACTACAGGACCACAGTGGGGGGT
CGGGAGATGAAGCCGTGGCTTCGGCAAGCGCAGGAGGCTTACATGGGGCT
TCGTTTATCCAGGCCGATCTCGTTGAGCGGATACCACCCTCCATGGATGG
AAAGCCATACGACCTCATCTTCCTCAGGGACGTCATGCTCCACCTCGCCC
GTCAACACAACGTGCAGATGCTGCAGAACATAGAGGCTAGTGGTGCGCGA
TTCTTGATGGCGAGCACGAACGTTGACGGCAACGACAACTGGAAGGCTGA
TACCTTTCGGCCGGCGGACGGGCTCTTGGTAAATCTTTCTCTACCACCAT
ACTGCTTGCGGCCGCCGATTGCGCTCTACTCCGACGCGATCCCCGAACGA
CCGGGCCAGCGTATGGGGCTGTGGGAGTTGGATCCCGCCAGGCCGCTTGT
TGGTTCGAATGAGCTATGTGACCATATTTCCCCAGGTCCCCAGGAGCTAC
CCTAA