EsuBft1332_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1332_2a-0001
Unique NameEsuBft1332_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_94contigScaffold_94:364095..364426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1332_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length33
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1332_2aEsuBft1332_2aEctocarpus subulatus male Bft15bgeneScaffold_94 364095..364426 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1332_2a-0001-exonEsuBft1332_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_94 364095..364426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1332_2a-0001-cdsEsuBft1332_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_94 364095..364328 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1332_2a-0001-exonagat-three_prime_utr-3055Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_94 364329..364426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1332_2a-0001EsuBft1332_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_94 364095..364328 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1332_2a-0001 ID=EsuBft1332_2a-0001|Name=EsuBft1332_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=332bp|location=Sequence derived from alignment at Scaffold_94:364095..364426+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGAGAACTGAAAGTAAAGGGCGTGACAGTATTCGGCCCAGGAGG
AAGGAGCCACCGGCCGAGTACTTGCACCCTTTGCACGAAGCTCAGCAAAC
TGTTCTGCGTTACGCCACTCGAGCGTTCCCTTGGTCAACTGCAACAGGGT
ATCGTACGCAGCCCCTCGCAGAAGAAGCGGGAGGTATCGCACAGCACGTT
GGTCGACTACATGGTCAGGGCAGTTGTCGACTGAGTTCAGTTTCACACGT
GCACGGTATTGCGCCAAAAGTTCTACAATACCTTGTCCTGGTGCCCCTGA
GAAAACAAGATCTTTGGGTAGGCCTGCGGGTT
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protein sequence of EsuBft1332_2a-0001

>EsuBft1332_2 ID=EsuBft1332_2|Name=EsuBft1332_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=77bp
MSGELKVKGVTVFGPGGRSHRPSTCTLCTKLSKLFCVTPLERSLGQLQQG
IVRSPSQKKREVSHSTLVDYMVRAVVD
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mRNA from alignment at Scaffold_94:364095..364426+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1332_2a-0001 ID=EsuBft1332_2a-0001|Name=EsuBft1332_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=332bp|location=Sequence derived from alignment at Scaffold_94:364095..364426+ (Ectocarpus subulatus male Bft15b)
ATGAGCGGAGAACTGAAAGTAAAGGGCGTGACAGTATTCGGCCCAGGAGG
AAGGAGCCACCGGCCGAGTACTTGCACCCTTTGCACGAAGCTCAGCAAAC
TGTTCTGCGTTACGCCACTCGAGCGTTCCCTTGGTCAACTGCAACAGGGT
ATCGTACGCAGCCCCTCGCAGAAGAAGCGGGAGGTATCGCACAGCACGTT
GGTCGACTACATGGTCAGGGCAGTTGTCGACTGAGTTCAGTTTCACACGT
GCACGGTATTGCGCCAAAAGTTCTACAATACCTTGTCCTGGTGCCCCTGA
GAAAACAAGATCTTTGGGTAGGCCTGCGGGTT
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Coding sequence (CDS) from alignment at Scaffold_94:364095..364426+

>EsuBft1332_2a-0001 ID=EsuBft1332_2a-0001|Name=EsuBft1332_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=234bp|location=Sequence derived from alignment at Scaffold_94:364095..364426+ (Ectocarpus subulatus male Bft15b)
ATGAGCGGAGAACTGAAAGTAAAGGGCGTGACAGTATTCGGCCCAGGAGG
AAGGAGCCACCGGCCGAGTACTTGCACCCTTTGCACGAAGCTCAGCAAAC
TGTTCTGCGTTACGCCACTCGAGCGTTCCCTTGGTCAACTGCAACAGGGT
ATCGTACGCAGCCCCTCGCAGAAGAAGCGGGAGGTATCGCACAGCACGTT
GGTCGACTACATGGTCAGGGCAGTTGTCGACTGA
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