EsuBft94_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft94_17a-0001
Unique NameEsuBft94_17a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_94contigScaffold_94:172492..173995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft94_17
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length127
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft94_17aEsuBft94_17aEctocarpus subulatus male Bft15bgeneScaffold_94 172492..173995 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft94_17a-0001-exonEsuBft94_17a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_94 172492..173715 -
EsuBft94_17a-0001-exonagat-exon-104182Ectocarpus subulatus male Bft15bexonScaffold_94 173942..173995 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft94_17a-0001-exonagat-three_prime_utr-23399Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_94 172492..173697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft94_17a-0001-cdsEsuBft94_17a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_94 173698..173715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft94_17a-0001EsuBft94_17Ectocarpus subulatus male Bft15bpolypeptideScaffold_94 173698..173995 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft94_17a-0001 ID=EsuBft94_17a-0001|Name=EsuBft94_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1278bp|location=Sequence derived from alignment at Scaffold_94:172492..173995- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGTTGGACAGCGGTCGCCGATGGGCCGGTACCCCTCGACGGGCTC
TCAGGTCGTCTCCGAATTCTAGACCGCGCAAAGCCACCACACGTAGAAAG
AACCCAATTTCTAGTTTGGTGTGTGCTTTCTGCCTCTCCTTTTTTCTGGG
ATCTTGACCGTCGCCATGTGCCGTTTGTTAATGGCATGGTACCGGGCGGT
GCCCGACCCATCTCTGATCACATGACTCCCTCGCCCTGCCTCTTATCGAG
TGACAGCAGTTGTTCGGTTAGCCTTAGTTGCTGTTTCTCACGTTAGGTCA
ATGGTAAGTACGAGGAATATACCGTTGTGCGTCGTTCTCTTTGAGGTCCT
CTCCGAGTTGTGAGAAGAGCCTCAACCGCTCCCCCGAAGACATCGGAACA
AGTATATGTACTGCTGTAGAGCGGCGCTCATTTTTTTTTCCGCTGCCCGC
ACACTCCCTCTGCCAGATACCACCTACCATCCGAAGACATCGGAAGAAGT
ATATGTACTGCTGTAGAGCGCCGCTCATTTTTTTTTTCTGCTGCCCGCAC
ACTCCCTCTGCCAGATAGCACGTACCATCTACAGTAGTAAGAATAACAGA
TGAAGTGACCACCACGTTGCTTTCGCGATTTTCAGGTGTGAGCCCTTCTG
GAACACGTGAACCTGGAAGGCAGGGTACTCGATTGCTGTGGTGCCGCCCA
AGACGCAGTCTACACCGTCCTGAGTTCACACCGTCTTATATGCAGCTCTT
GTAGGACACCCGCCATGCCCCGAACGACAACCAGCAAGAGGGTCCGAGCG
ACAGCCACCAAGTAGCCACCCCACGACCCGTCCACGGCAGACGGGCCGTC
CATATACATGAAGCGGTCCCCTGGACAAGCGGTATTCGGTGCCGGGTTCA
CCGTGTCGTCCAGATTGACGTTGTAGCATGCCCTGAATACGCGCAGTTAC
AAGCAAAAATCACGTCAAACGGCGCCCGTTAACTGTATGTATGTGTTGTG
CACTTAACGGCGTGGCTCAACTGGCAGGGATCCACGTCAATCTACTCGTG
TGCAAAAATTGGAGGATCTGCACGTTGCCGTGTTCCAACAAGCCTTGCCT
TTTGGCGCTGGGATATGAGACTCATGGATCTCCTTAAGGCTATTCCGATC
CAAGTACTGTTGGTGTATACTTAGCTACCATGGTCATCGTCCTCTACCCA
ACGCACGTTGTTTGTGTCTAGGCCGTGGGGGAAGGAGAACAACTTGAACG
TACAAGTAGAAAGCAAGGACGTTCCGTT
back to top

protein sequence of EsuBft94_17a-0001

>EsuBft94_17 ID=EsuBft94_17|Name=EsuBft94_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=23bp
MVVGQRSPMGRYPSTGSQVVSEF
back to top

mRNA from alignment at Scaffold_94:172492..173995-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft94_17a-0001 ID=EsuBft94_17a-0001|Name=EsuBft94_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1504bp|location=Sequence derived from alignment at Scaffold_94:172492..173995- (Ectocarpus subulatus male Bft15b)
ATGGTGGTTGGACAGCGGTCGCCGATGGGCCGGTACCCCTCGACGGGCTC
TCAGGTATGATGCTGCAGATACACCACCTCTGTCTACGGCAGTGTACGGT
AAGGACACGGGGGTGTCAGCATTTATCATAGCGTGATTTCTCCACGACCA
GGAGGGTACCACTGCCGACAAGGGTAGTTTTGAAAAACCACGTCGAGGAC
TTGCCTGAGAGGTAGGTAGGTGTTCGCAACCTCATCGCCGTGCCAACACC
CCCGTGCGTTCTCTCGCATCCTTACGGTAGGTCGTCTCCGAATTCTAGAC
CGCGCAAAGCCACCACACGTAGAAAGAACCCAATTTCTAGTTTGGTGTGT
GCTTTCTGCCTCTCCTTTTTTCTGGGATCTTGACCGTCGCCATGTGCCGT
TTGTTAATGGCATGGTACCGGGCGGTGCCCGACCCATCTCTGATCACATG
ACTCCCTCGCCCTGCCTCTTATCGAGTGACAGCAGTTGTTCGGTTAGCCT
TAGTTGCTGTTTCTCACGTTAGGTCAATGGTAAGTACGAGGAATATACCG
TTGTGCGTCGTTCTCTTTGAGGTCCTCTCCGAGTTGTGAGAAGAGCCTCA
ACCGCTCCCCCGAAGACATCGGAACAAGTATATGTACTGCTGTAGAGCGG
CGCTCATTTTTTTTTCCGCTGCCCGCACACTCCCTCTGCCAGATACCACC
TACCATCCGAAGACATCGGAAGAAGTATATGTACTGCTGTAGAGCGCCGC
TCATTTTTTTTTTCTGCTGCCCGCACACTCCCTCTGCCAGATAGCACGTA
CCATCTACAGTAGTAAGAATAACAGATGAAGTGACCACCACGTTGCTTTC
GCGATTTTCAGGTGTGAGCCCTTCTGGAACACGTGAACCTGGAAGGCAGG
GTACTCGATTGCTGTGGTGCCGCCCAAGACGCAGTCTACACCGTCCTGAG
TTCACACCGTCTTATATGCAGCTCTTGTAGGACACCCGCCATGCCCCGAA
CGACAACCAGCAAGAGGGTCCGAGCGACAGCCACCAAGTAGCCACCCCAC
GACCCGTCCACGGCAGACGGGCCGTCCATATACATGAAGCGGTCCCCTGG
ACAAGCGGTATTCGGTGCCGGGTTCACCGTGTCGTCCAGATTGACGTTGT
AGCATGCCCTGAATACGCGCAGTTACAAGCAAAAATCACGTCAAACGGCG
CCCGTTAACTGTATGTATGTGTTGTGCACTTAACGGCGTGGCTCAACTGG
CAGGGATCCACGTCAATCTACTCGTGTGCAAAAATTGGAGGATCTGCACG
TTGCCGTGTTCCAACAAGCCTTGCCTTTTGGCGCTGGGATATGAGACTCA
TGGATCTCCTTAAGGCTATTCCGATCCAAGTACTGTTGGTGTATACTTAG
CTACCATGGTCATCGTCCTCTACCCAACGCACGTTGTTTGTGTCTAGGCC
GTGGGGGAAGGAGAACAACTTGAACGTACAAGTAGAAAGCAAGGACGTTC
CGTT
back to top

Coding sequence (CDS) from alignment at Scaffold_94:172492..173995-

>EsuBft94_17a-0001 ID=EsuBft94_17a-0001|Name=EsuBft94_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=72bp|location=Sequence derived from alignment at Scaffold_94:172492..173995- (Ectocarpus subulatus male Bft15b)
ATGGTGGTTGGACAGCGGTCGCCGATGGGCCGGTACCCCTCGACGGGCTC
TCAGGTCGTCTCCGAATTCTAG
back to top